Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033955.1

Orthogroup ID

OG0005389

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5262

Gene Structure 5262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

gaaaagttggcatattttcggataaaagagctcaaggatgttctcactcaattaggtctttcaaagcaggggaagaagcaggatcttgttgaaaggatattgtccattctttctgatgagcaagtttcaaaattgtggccaaagaagactgctgttggaaaggaacaggtggcagaacttgtagatgatacctatagaaaaatgcagatatctggggccacaactgatttagcatcaaagggacaatgcatctctgattgtagtaatgtgaaagttaaaggtgaaattgatgaccacttccactcagatataaaggttcgttgtgtctgcgggaattcattagaaacagagtcaatgatcaagtgtgaggacctgagatgtcgtgtttggcaacacatgggttgcgttataattccagagaaaccgatggaaggcaatccaccagttccggaattgttttactgtgaactatgtcgactaagtcgggctgacccgttttgggttactgtgctacatcctttacatcccgtgaagttgaatgttactaatattccgactgatggctcaaaccctgtacaaagtgtggataaaacatttcaactcacaagagcggacagggacttactgtctaaacaagattatgatgttcaggcttggtgcatgcttttaaatgacaaagtttccttcaggatgcaatggccacaatatgcagatctacaggtcaatggtatgcctgttcgtgcaattaatagacctggttcgcaacttcttggagctaatggtcgtgatgatggtccaattgtgagttctctccctgtgcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006935 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009593 GO:0009605 GO:0009628 GO:0009653 GO:0009787 GO:0009791 GO:0009826 GO:0009856 GO:0009908 GO:0009909 GO:0009910 GO:0009966 GO:0009987 GO:0009991 GO:0010035 GO:0010112 GO:0010113 GO:0010183 GO:0010247 GO:0010286 GO:0010337 GO:0010565 GO:0010646 GO:0010817 GO:0016036 GO:0016043 GO:0016049 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0023051 GO:0031323 GO:0031347 GO:0031348 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032102 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035670 GO:0036211 GO:0040007 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0045088 GO:0045824 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048868 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051301 GO:0051606 GO:0051704 GO:0051716 GO:0060560 GO:0061458 GO:0061659 GO:0061665 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0071840 GO:0080134 GO:0090352 GO:0090567 GO:0099402 GO:0140096 GO:1901419 GO:1901564 GO:1901700 GO:1903314 GO:1905957 GO:2000026 GO:2000070 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04120 ko04630 ko05160 map04120 map04630 map05160

Pfam Domains

Protein Families

PHD SAP zf-MIZ

Protein Analysis

274

Amino Acids

30.91

Weight (kDa)

6.67

Isoelectric Point (pI)

26.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60410 AT5G60410 AT5G60410 AT5G60410 AT5G60410 AT5G60410
fragaria_vesca	FvH4_3g32990 FvH4_3g32990 FvH4_3g32990 FvH4_3g32990
malus_domestica	MD03G1112700.v1.1 MD11G1131700.v1.1
prunus_persica	Prupe.6G097000_v2.0.a1 Prupe.6G097000_v2.0.a1 Prupe.6G097000_v2.0.a1 Prupe.6G097000_v2.0.a1
pyrus_communis	pycom11g10880
rosa_chinensis	RchiOBHm_Chr5g0060321
rosa_laevigata	RLG00000035354
rosa_multiflora	Rmu_sc0019493.1_g000001 Rmu_sc0019494.1_g000001 Rmu_sc0033955.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020460
rosa_rugosa	Rorug05G0328700.1
rosa_samantha	Rh5AG393400 Rh5BG405900 Rh5CG429800 Rh5DG420900
rosa_wichuraiana	Rw5G037030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccBSI	CCGCTC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	2 cut(s)	330, 611
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	2 cut(s)	137, 698
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	670
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	3 cut(s)	431, 499, 560
AgsI	TTSAA	5 cut(s)	63, 92, 129, 538, 599
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	754
AjuI	GAANNNNNNNTTGG	2 cut(s)	790, 822
AluBI	AGCT	2 cut(s)	31, 776
AluI	AGCT	2 cut(s)	31, 776
Alw21I	GWGCWC	2 cut(s)	33, 822
Alw44I	GTGCAC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	3 cut(s)	137, 216, 698
ApaLI	GTGCAC	1 cut(s)	818
ApoI	RAATTY	1 cut(s)	334
AseI	ATTAAT	1 cut(s)	747
AspS9I	GGNCC	3 cut(s)	216, 370, 794
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	370, 794
BaeGI	GKGCMC	1 cut(s)	822
BalI	TGGCCA	2 cut(s)	139, 700
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	2 cut(s)	33, 822
BccI	CCATC	3 cut(s)	421, 554, 785
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	357
BfmI	CTRYAG	2 cut(s)	193, 716
BglII	AGATCT	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	2 cut(s)	370, 794
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	216, 370, 794
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	3 cut(s)	242, 258, 681
BpiI	GAAGAC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 499, 560
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	701
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	756
BseGI	GGATG	4 cut(s)	43, 514, 523, 696
BseLI	CCNNNNNNNGG	3 cut(s)	431, 499, 560
BseMI	GCAATG	1 cut(s)	701
BseMII	CTCAG	2 cut(s)	318, 365
BseNI	ACTGG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	822
BshFI	GGCC	3 cut(s)	139, 218, 700
BsiHKAI	GWGCWC	2 cut(s)	33, 822
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	2 cut(s)	255, 632
BslI	CCNNNNNNNGG	3 cut(s)	431, 499, 560
BsmFI	GGGAC	2 cut(s)	255, 632
BsnI	GGCC	3 cut(s)	139, 218, 700
Bsp1286I	GDGCHC	2 cut(s)	33, 822
Bsp13I	TCCGGA	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	82, 357, 712
BspACI	CCGC	2 cut(s)	330, 611
BspANI	GGCC	3 cut(s)	139, 218, 700
BspCNI	CTCAG	2 cut(s)	317, 366
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	701
BsrGI	TGTACA	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	443
BssMI	GATC	3 cut(s)	82, 357, 712
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	464, 508, 627
BstAUI	TGTACA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	3 cut(s)	304, 374, 479
BstF5I	GGATG	4 cut(s)	43, 514, 523, 696
BstKTI	GATC	3 cut(s)	85, 360, 715
BstMBI	GATC	3 cut(s)	82, 357, 712
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	2 cut(s)	193, 716
BstSLI	GKGCMC	1 cut(s)	822
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	82, 712
BstYI	RGATCY	2 cut(s)	82, 712
BsuRI	GGCC	3 cut(s)	139, 218, 700
BtsCI	GGATG	4 cut(s)	43, 514, 523, 696
Cac8I	GCNNGC	1 cut(s)	662
Cfr13I	GGNCC	3 cut(s)	216, 370, 794
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	2 cut(s)	397, 661
CviJI	RGCY	8 cut(s)	31, 139, 218, 488, 564, 653, 700, 776
CviKI_1	RGCY	8 cut(s)	31, 139, 218, 488, 564, 653, 700, 776
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	3 cut(s)	304, 374, 479
DpnI	GATC	3 cut(s)	84, 359, 714
DpnII	GATC	3 cut(s)	82, 357, 712
DraI	TTTAAA	1 cut(s)	669
DriI	GACNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	2 cut(s)	137, 698
Eam1105I	GACNNNNNGTC	1 cut(s)	625
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	370, 794
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	670
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	2 cut(s)	400, 664
FaqI	GGGAC	2 cut(s)	255, 632
FatI	CATG	2 cut(s)	396, 660
FauI	CCCGC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	475
FokI	GGATG	4 cut(s)	50, 501, 510, 703
FriOI	GRGCYC	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	139, 218, 700
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	2 cut(s)	400, 664
HincII	GTYRAC	1 cut(s)	476
HindII	GTYRAC	1 cut(s)	476
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	3 cut(s)	467, 476, 820
Hpy188I	TCNGA	5 cut(s)	21, 115, 256, 307, 555
Hpy188III	TCNNGA	4 cut(s)	416, 449, 688, 785
Hpy8I	GTNNAC	3 cut(s)	467, 476, 820
HpyAV	CCTTC	2 cut(s)	425, 694
HpyCH4III	ACNGT	3 cut(s)	464, 508, 627
HpyCH4V	TGCA	7 cut(s)	205, 249, 660, 694, 710, 743, 820
HpyF3I	CTNAG	3 cut(s)	304, 374, 479
Hsp92II	CATG	2 cut(s)	400, 664
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	82, 357, 712
LmnI	GCTCC	1 cut(s)	773
LweI	GCATC	3 cut(s)	242, 258, 681
MabI	ACCWGGT	1 cut(s)	754
MaeIII	GTNAC	2 cut(s)	502, 541
MalI	GATC	3 cut(s)	84, 359, 714
MbiI	CCGCTC	1 cut(s)	611
MboI	GATC	3 cut(s)	82, 357, 712
MboII	GAAGA	2 cut(s)	85, 157
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	2 cut(s)	82, 712
MhlI	GDGCHC	2 cut(s)	33, 822
MlsI	TGGCCA	2 cut(s)	139, 700
MluCI	AATT	8 cut(s)	50, 131, 285, 334, 411, 452, 744, 798
MluNI	TGGCCA	2 cut(s)	139, 700
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	136, 578
MnlI	CCTC	1 cut(s)	361
Mox20I	TGGCCA	2 cut(s)	139, 700
Mph1103I	ATGCAT	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	448
MscI	TGGCCA	2 cut(s)	139, 700
MseI	TTAA	3 cut(s)	276, 668, 747
Msp20I	TGGCCA	2 cut(s)	139, 700
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	756
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	756
NdeII	GATC	3 cut(s)	82, 357, 712
NlaIII	CATG	2 cut(s)	400, 664
NlaIV	GGNNCC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	251
NspI	RCATGY	1 cut(s)	664
PaeI	GCATGC	1 cut(s)	664
PflFI	GACNNNGTC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	216, 370, 794
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	82, 712
PsyI	GACNNNGTC	1 cut(s)	480
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	33
SalI	GTCGAC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	276, 668, 747
Sau3AI	GATC	3 cut(s)	82, 357, 712
Sau96I	GGNCC	3 cut(s)	216, 370, 794
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	2 cut(s)	33, 822
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	3 cut(s)	242, 258, 681
SfcI	CTRYAG	2 cut(s)	193, 716
SinI	GGWCC	2 cut(s)	370, 794
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	8 cut(s)	50, 131, 285, 334, 411, 452, 744, 798
SsiI	CCGC	2 cut(s)	330, 611
SspI	AATATT	1 cut(s)	550
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	754
TaaI	ACNGT	3 cut(s)	464, 508, 627
TaqI	TCGA	1 cut(s)	475
TasI	AATT	8 cut(s)	50, 131, 285, 334, 411, 452, 744, 798
TatI	WGTACW	1 cut(s)	574
Tru1I	TTAA	3 cut(s)	276, 668, 747
Tru9I	TTAA	3 cut(s)	276, 668, 747
TspDTI	ATGAA	1 cut(s)	327
Tth111I	GACNNNGTC	1 cut(s)	480
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	370, 794
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.