Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019494.1

Orthogroup ID

OG0005389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2605

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019494.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1040 bp

atgcctgttcgtgcaattaatagacctggttcgcaacttcttggagctaatggtcgtgatgatggtccaattattctcaacctgattcccaaggagtctgatggtgagcgttttgaagatgctcttgctcgtgtttgtcgttgtgttggtggtggcactgcaatggataatgctgatagtgacagtgacttggaagtcgtggcagattcgtttaccgtcaatctacgttgtcctatgagtggttcaaggatgaaggttgctggtagattcaaaccttgtcttcacatgggctgttttgatcttgatgtttttgttgaactaaatcagcgctcaaggaagtggcaatgtccaatttgtctaaagaactatgcgctggagaatgttattattgatccttattttaatcgtatagcttccaagatgaggcattgtggagaagatgttgcagagattgaagtgaagcctgatggttcttggcgagtgaaggttaaaagtgaaagtgaacgcagggaacttggggaacttgggcggtggcaccttcctgatagtacgctttgcgttccaacacatggagaaactatcccaaaatctgaagtgttgaagccggtcaaacaggaaggggtttcagaaggtcatactggtttgaaactaggaatcagaaagaaccggaatggtgtttgggaattcagcagacctgaagaaatgaacacctcttctggtaataaattacaacagcagtttggagaacatgagctaaaagttatccccatgagtagcagtgccactgggagtggtagggatggtgaagatgcaagtgtaaatcaggagggtggtgggaattttgatttctctacaaacaatggaatagagatggattctttttctctgaatgttgattcagcatatgcatttgcggaaccaaattcttctgcaccagtaggagatgctgatgttattgtcctaagtgattcagacgaagaaataatgccttctgaaaccatttatgggactaattttactgatgctggtgggattggttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006935 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009593 GO:0009605 GO:0009628 GO:0009653 GO:0009787 GO:0009791 GO:0009826 GO:0009856 GO:0009908 GO:0009909 GO:0009910 GO:0009966 GO:0009987 GO:0009991 GO:0010035 GO:0010112 GO:0010113 GO:0010183 GO:0010247 GO:0010286 GO:0010337 GO:0010565 GO:0010646 GO:0010817 GO:0016036 GO:0016043 GO:0016049 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0023051 GO:0031323 GO:0031347 GO:0031348 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032102 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035670 GO:0036211 GO:0040007 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0045088 GO:0045824 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048868 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051301 GO:0051606 GO:0051704 GO:0051716 GO:0060560 GO:0061458 GO:0061659 GO:0061665 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0071840 GO:0080134 GO:0090352 GO:0090567 GO:0099402 GO:0140096 GO:1901419 GO:1901564 GO:1901700 GO:1903314 GO:1905957 GO:2000026 GO:2000070 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04120 ko04630 ko05160 map04120 map04630 map05160

Pfam Domains

Protein Families

PHD SAP zf-MIZ

Protein Analysis

346

Amino Acids

37.75

Weight (kDa)

4.86

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60410 AT5G60410 AT5G60410 AT5G60410 AT5G60410 AT5G60410
fragaria_vesca	FvH4_3g32990 FvH4_3g32990 FvH4_3g32990 FvH4_3g32990
malus_domestica	MD03G1112700.v1.1 MD11G1131700.v1.1
prunus_persica	Prupe.6G097000_v2.0.a1 Prupe.6G097000_v2.0.a1 Prupe.6G097000_v2.0.a1 Prupe.6G097000_v2.0.a1
pyrus_communis	pycom11g10880
rosa_chinensis	RchiOBHm_Chr5g0060321
rosa_laevigata	RLG00000035354
rosa_multiflora	Rmu_sc0019493.1_g000001 Rmu_sc0019494.1_g000001 Rmu_sc0033955.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020460
rosa_rugosa	Rorug05G0328700.1
rosa_samantha	Rh5AG393400 Rh5BG405900 Rh5CG429800 Rh5DG420900
rosa_wichuraiana	Rw5G037030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	534
AccB7I	CCANNNNNTGG	1 cut(s)	569
AciI	CCGC	2 cut(s)	529, 914
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	3 cut(s)	683, 838, 922
AcuI	CTGAAG	2 cut(s)	612, 717
AfaI	GTAC	1 cut(s)	550
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	239, 423, 569, 1005
AgsI	TTSAA	7 cut(s)	116, 246, 271, 317, 455, 601, 646
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	47, 413, 754
AluI	AGCT	3 cut(s)	47, 413, 754
AlwI	GGATC	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	329
ApoI	RAATTY	3 cut(s)	683, 838, 922
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	330, 373
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	116, 815
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	272
BccI	CCATC	5 cut(s)	56, 95, 461, 794, 865
BciT130I	CCWGG	1 cut(s)	27
BfaI	CTAG	1 cut(s)	650
BfoI	RGCGCY	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	536, 918
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	4 cut(s)	109, 799, 934, 1012
BmuI	ACTGGG	1 cut(s)	795
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 423, 569, 1005
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	3 cut(s)	643, 790, 935
Bse3DI	GCAATG	2 cut(s)	168, 350
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	255, 805
BseLI	CCNNNNNNNGG	4 cut(s)	239, 423, 569, 1005
BseMI	GCAATG	2 cut(s)	168, 350
BseNI	ACTGG	3 cut(s)	643, 790, 935
BsgI	GTGCAG	1 cut(s)	915
BshNI	GGYRCC	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	605, 667
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	4 cut(s)	239, 423, 569, 1005
BsmFI	GGGAC	1 cut(s)	1021
Bsp143I	GATC	2 cut(s)	298, 391
BspACI	CCGC	2 cut(s)	529, 914
BspLI	GGNNCC	2 cut(s)	536, 918
BspPI	GGATC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	168, 350
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	3 cut(s)	643, 790, 935
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	298, 391
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	185, 217
Bst6I	CTCTTC	1 cut(s)	718
BstDEI	CTNAG	1 cut(s)	962
BstF5I	GGATG	2 cut(s)	255, 805
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	330, 373
BstKTI	GATC	2 cut(s)	301, 394
BstMBI	GATC	2 cut(s)	298, 391
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	255, 805
BtsI	GCAGTG	2 cut(s)	156, 784
BtsIMutI	CAGTG	4 cut(s)	156, 190, 783, 784
CfoI	GCGC	2 cut(s)	330, 373
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	4 cut(s)	286, 569, 749, 769
CviJI	RGCY	6 cut(s)	47, 291, 413, 463, 604, 754
CviKI_1	RGCY	6 cut(s)	47, 291, 413, 463, 604, 754
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	1 cut(s)	962
DpnI	GATC	2 cut(s)	300, 393
DpnII	GATC	2 cut(s)	298, 391
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	65
Eco47III	AGCGCT	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	612, 717
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	910
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	289, 572, 752, 772
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	4 cut(s)	285, 568, 748, 768
FauNDI	CATATG	1 cut(s)	904
FokI	GGATG	2 cut(s)	262, 812
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	2 cut(s)	329, 372
GsuI	CTGGAG	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	331
HapII	CCGG	2 cut(s)	605, 667
HhaI	GCGC	2 cut(s)	330, 373
Hin1II	CATG	4 cut(s)	289, 572, 752, 772
Hin6I	GCGC	2 cut(s)	328, 371
HinP1I	GCGC	2 cut(s)	328, 371
HinfI	GANTC	8 cut(s)	85, 95, 206, 267, 654, 875, 896, 968
HpaII	CCGG	2 cut(s)	605, 667
HphI	GGTGA	2 cut(s)	116, 815
Hpy166II	GTNNAC	2 cut(s)	213, 503
Hpy188I	TCNGA	7 cut(s)	100, 592, 628, 659, 888, 973, 994
Hpy188III	TCNNGA	4 cut(s)	56, 302, 542, 824
Hpy8I	GTNNAC	2 cut(s)	213, 503
HpyAV	CCTTC	6 cut(s)	247, 478, 548, 611, 623, 999
HpyCH4III	ACNGT	2 cut(s)	185, 217
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	6 cut(s)	14, 161, 446, 812, 908, 932
HpyF3I	CTNAG	1 cut(s)	962
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	289, 572, 752, 772
HspAI	GCGC	2 cut(s)	328, 371
Kzo9I	GATC	2 cut(s)	298, 391
LmnI	GCTCC	1 cut(s)	44
LweI	GCATC	4 cut(s)	109, 799, 934, 1012
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	179, 185
MalI	GATC	2 cut(s)	300, 393
MboI	GATC	2 cut(s)	298, 391
MboII	GAAGA	8 cut(s)	128, 272, 449, 705, 710, 818, 918, 989
MluCI	AATT	8 cut(s)	15, 69, 351, 683, 725, 838, 922, 1012
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	3 cut(s)	417, 721, 820
Mph1103I	ATGCAT	1 cut(s)	910
MseI	TTAA	3 cut(s)	18, 402, 489
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	2 cut(s)	605, 667
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	2 cut(s)	298, 391
NlaIII	CATG	4 cut(s)	289, 572, 752, 772
NlaIV	GGNNCC	2 cut(s)	536, 918
NmuCI	GTSAC	2 cut(s)	179, 185
NsiI	ATGCAT	1 cut(s)	910
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PfeI	GAWTC	7 cut(s)	85, 206, 267, 654, 875, 896, 968
PflMI	CCANNNNNTGG	1 cut(s)	569
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	536, 918
PspPI	GGNCC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	18, 402, 489
Sau3AI	GATC	2 cut(s)	298, 391
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	27
SexAI	ACCWGGT	1 cut(s)	25
SfaNI	GCATC	4 cut(s)	109, 799, 934, 1012
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	8 cut(s)	15, 69, 351, 683, 725, 838, 922, 1012
SsiI	CCGC	2 cut(s)	529, 914
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	185, 217
TaiI	ACGT	1 cut(s)	229
TasI	AATT	8 cut(s)	15, 69, 351, 683, 725, 838, 922, 1012
TfiI	GAWTC	7 cut(s)	85, 206, 267, 654, 875, 896, 968
Tru1I	TTAA	3 cut(s)	18, 402, 489
Tru9I	TTAA	3 cut(s)	18, 402, 489
TscAI	CASTG	4 cut(s)	163, 190, 784, 790
TseFI	GTSAC	2 cut(s)	179, 185
Tsp45I	GTSAC	2 cut(s)	179, 185
TspDTI	ATGAA	2 cut(s)	266, 719
TspRI	CASTG	4 cut(s)	163, 190, 784, 790
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	3 cut(s)	683, 838, 922
XspI	CTAG	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.