Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020850.1

Orthogroup ID

OG0011902

Physical Location & Seq

Genomic Coordinates Forward (+)

447 .. 1119

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020850.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ctggttctctcacaagacgacctcctaaacgccgctaacccggccgacggcggcgacgctcccgccgccgatccgactcagaatgactcggccgactgggacgagttcggcgactcggcgtatccgcaatccgaggaggagctcgacccgggctcgtggcgtcccatcttcgaacccggcccgttcaagcccgacctgtccgcccacccggacaaggagtactactccaccgtgtcgaaattggtcgactccgtcagctccggcgacacggcgctcatggaggacgcggtttcggagatcgaggcgtccgctgcccgcggtgtgcctcacgcgcggtcggtgctcgggtttctgttcggcacgggacagatgaggaagcagaacaaggccaaggcgttcacgtaccattacttcgccgcggagggcggcaatatgcagtcgaagatggctctggcttatacttactttaggcaagatatgtttgagaaagcggtgaagctgtactcggaattagccgaggcagctgtgaatagcttcttgatttcaaaggactctccggtgattgagccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000835 GO:0000836 GO:0000839 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009306 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031984 GO:0032940 GO:0032991 GO:0033036 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042538 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046486 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051716 GO:0071702 GO:0071704 GO:0071705 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sel1 TPR_3

Protein Analysis

190

Amino Acids

20.66

Weight (kDa)

4.38

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18260 AT1G73570
fragaria_vesca	FvH4_5g17420
malus_domestica	MD06G1227600.v1.1 MD14G1236800.v1.1
prunus_persica	Prupe.5G234000_v2.0.a1 Prupe.5G234000_v2.0.a1
pyrus_communis	pycom14g19780
rosa_chinensis	RchiOBHm_Chr7g0178271
rosa_laevigata	RLG00000005457
rosa_multiflora	Rmu_sc0020850.1_g000001 Rmu_ssc0000283.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275020
rosa_rugosa	Rorug06G0415900
rosa_samantha	Rh7AG014700 Rh7BG014200 Rh7CG014200 Rh7DG014500
rosa_wichuraiana	Rw7G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	5 cut(s)	287, 318, 332, 334, 419
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	2 cut(s)	42, 90
AcyI	GRCGYC	2 cut(s)	160, 305
AfaI	GTAC	3 cut(s)	221, 404, 503
AfiI	CCNNNNNNNGG	2 cut(s)	47, 214
AgsI	TTSAA	2 cut(s)	187, 546
AluBI	AGCT	5 cut(s)	142, 258, 499, 524, 534
AluI	AGCT	5 cut(s)	142, 258, 499, 524, 534
Alw21I	GWGCWC	2 cut(s)	144, 345
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	2 cut(s)	148, 344
AoxI	GGCC	4 cut(s)	42, 90, 178, 387
ApeKI	GCWGC	2 cut(s)	311, 521
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	274, 334
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	5 cut(s)	41, 149, 150, 177, 209
AsuHPI	GGTGA	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	2 cut(s)	148, 344
BanII	GRGCYC	2 cut(s)	144, 155
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BauI	CACGAG	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	144, 345
BbvI	GCAGC	2 cut(s)	298, 533
BccI	CCATC	2 cut(s)	173, 439
BceAI	ACGGC	2 cut(s)	64, 285
BciVI	GTATCC	1 cut(s)	132
BcnI	CCSGG	5 cut(s)	41, 149, 150, 177, 209
BfoI	RGCGCY	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	132
BisI	GCNGC	7 cut(s)	33, 52, 66, 312, 417, 427, 522
BlsI	GCNGC	7 cut(s)	34, 53, 67, 313, 418, 428, 523
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	5 cut(s)	41, 149, 150, 177, 209
BmeT110I	CYCGRG	2 cut(s)	148, 344
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	5 cut(s)	41, 149, 150, 177, 209
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu14I	TTCGAA	1 cut(s)	171
BpuMI	CCSGG	5 cut(s)	41, 149, 150, 177, 209
BsaAI	YACGTR	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	160, 305
BsaJI	CCNNGG	6 cut(s)	132, 148, 316, 390, 417, 516
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 214
Bse1I	ACTGG	1 cut(s)	101
BseDI	CCNNGG	6 cut(s)	132, 148, 316, 390, 417, 516
BseLI	CCNNNNNNNGG	2 cut(s)	47, 214
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	2 cut(s)	149, 152
BseX3I	CGGCCG	2 cut(s)	42, 90
BseXI	GCAGC	2 cut(s)	298, 533
Bsh1236I	CGCG	5 cut(s)	287, 318, 332, 334, 419
Bsh1285I	CGRYCG	3 cut(s)	45, 93, 338
BshFI	GGCC	4 cut(s)	44, 92, 180, 389
BsiEI	CGRYCG	3 cut(s)	45, 93, 338
BsiHKAI	GWGCWC	2 cut(s)	144, 345
BsiHKCI	CYCGRG	2 cut(s)	148, 344
BsiSI	CCGG	6 cut(s)	41, 149, 177, 209, 261, 557
BslFI	GGGAC	3 cut(s)	113, 147, 378
BslI	CCNNNNNNNGG	2 cut(s)	47, 214
BsmFI	GGGAC	3 cut(s)	113, 147, 378
BsnI	GGCC	4 cut(s)	44, 92, 180, 389
BsoBI	CYCGRG	2 cut(s)	148, 344
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	144, 155, 345
Bsp143I	GATC	2 cut(s)	70, 297
BspANI	GGCC	4 cut(s)	44, 92, 180, 389
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	5 cut(s)	287, 318, 332, 334, 419
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	6 cut(s)	132, 148, 316, 390, 417, 516
BssMI	GATC	2 cut(s)	70, 297
BssNI	GRCGYC	2 cut(s)	160, 305
BssSI	CACGAG	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	232
BstACI	GRCGYC	2 cut(s)	160, 305
BstBAI	YACGTR	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	2 cut(s)	316, 417
BstFNI	CGCG	5 cut(s)	287, 318, 332, 334, 419
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	274, 334
BstKTI	GATC	2 cut(s)	73, 300
BstMBI	GATC	2 cut(s)	70, 297
BstMCI	CGRYCG	3 cut(s)	45, 93, 338
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 65, 311, 331, 340, 521
BstSCI	CCNGG	5 cut(s)	39, 147, 148, 175, 207
BstUI	CGCG	5 cut(s)	287, 318, 332, 334, 419
BstV1I	GCAGC	2 cut(s)	298, 533
BstZI	CGGCCG	2 cut(s)	42, 90
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	44, 92, 180, 389
BtgI	CCRYGG	2 cut(s)	316, 417
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	2 cut(s)	274, 334
Cfr13I	GGNCC	1 cut(s)	179
Cfr42I	CCGCGG	2 cut(s)	319, 420
Cfr9I	CCCGGG	1 cut(s)	148
CseI	GACGC	4 cut(s)	65, 149, 293, 294
Csp6I	GTAC	3 cut(s)	220, 403, 502
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	3 cut(s)	220, 403, 502
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	72, 299
DpnII	GATC	2 cut(s)	70, 297
EaeI	YGGCCR	2 cut(s)	42, 90
EagI	CGGCCG	2 cut(s)	42, 90
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	2 cut(s)	42, 90
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	2 cut(s)	144, 155
Eco52I	CGGCCG	2 cut(s)	42, 90
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	2 cut(s)	148, 344
EcoICRI	GAGCTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	2 cut(s)	144, 155
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	1 cut(s)	280
FaiI	YATR	4 cut(s)	278, 434, 459, 479
FaqI	GGGAC	3 cut(s)	113, 147, 378
FatI	CATG	1 cut(s)	276
FauI	CCCGC	2 cut(s)	70, 323
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	7 cut(s)	33, 52, 66, 312, 417, 427, 522
FriOI	GRGCYC	2 cut(s)	144, 155
Fsp4HI	GCNGC	7 cut(s)	33, 52, 66, 312, 417, 427, 522
GlaI	GCGC	2 cut(s)	273, 333
GluI	GCNGC	7 cut(s)	33, 52, 66, 312, 417, 427, 522
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	4 cut(s)	44, 92, 180, 389
HapII	CCGG	6 cut(s)	41, 149, 177, 209, 261, 557
HgaI	GACGC	4 cut(s)	65, 149, 293, 294
HhaI	GCGC	2 cut(s)	274, 334
Hin1I	GRCGYC	2 cut(s)	160, 305
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	272, 332
HinP1I	GCGC	2 cut(s)	272, 332
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	5 cut(s)	76, 86, 113, 248, 551
HpaII	CCGG	6 cut(s)	41, 149, 177, 209, 261, 557
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	2 cut(s)	247, 399
Hpy188I	TCNGA	5 cut(s)	75, 81, 133, 295, 508
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	2 cut(s)	247, 399
Hpy99I	CGWCG	2 cut(s)	50, 59
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 65, 311, 331, 340, 521
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	2 cut(s)	160, 305
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	272, 332
KspI	CCGCGG	2 cut(s)	319, 420
Kzo9I	GATC	2 cut(s)	70, 297
LmnI	GCTCC	3 cut(s)	64, 139, 263
LpnPI	CCDG	8 cut(s)	54, 82, 162, 190, 209, 222, 274, 437
Lsp1109I	GCAGC	2 cut(s)	298, 533
MaeII	ACGT	1 cut(s)	401
MalI	GATC	2 cut(s)	72, 299
MboI	GATC	2 cut(s)	70, 297
MboII	GAAGA	2 cut(s)	160, 454
MhlI	GDGCHC	3 cut(s)	144, 155, 345
MluCI	AATT	2 cut(s)	239, 509
MlyI	GAGTC	5 cut(s)	70, 80, 107, 242, 545
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	9 cut(s)	32, 127, 130, 274, 295, 336, 366, 415, 511
MroXI	GAANNNNTTC	1 cut(s)	533
MspA1I	CMGCKG	4 cut(s)	311, 318, 419, 524
MspI	CCGG	6 cut(s)	41, 149, 177, 209, 261, 557
MspR9I	CCNGG	5 cut(s)	41, 149, 150, 177, 209
MvnI	CGCG	5 cut(s)	287, 318, 332, 334, 419
MwoI	GCNNNNNNNGC	6 cut(s)	41, 65, 311, 331, 340, 521
NciI	CCSGG	5 cut(s)	41, 149, 150, 177, 209
NdeII	GATC	2 cut(s)	70, 297
NlaIII	CATG	1 cut(s)	280
NmeAIII	GCCGAG	3 cut(s)	68, 95, 541
NspV	TTCGAA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	533
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	7 cut(s)	34, 53, 67, 313, 418, 428, 523
PleI	GAGTC	5 cut(s)	70, 80, 107, 242, 545
PpsI	GAGTC	5 cut(s)	70, 80, 107, 242, 545
Ppu21I	YACGTR	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	179
PsyI	GACNNNGTC	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	3 cut(s)	221, 404, 503
RsaNI	GTAC	3 cut(s)	220, 403, 502
SacI	GAGCTC	1 cut(s)	144
SacII	CCGCGG	2 cut(s)	319, 420
SalI	GTCGAC	1 cut(s)	245
SatI	GCNGC	7 cut(s)	33, 52, 66, 312, 417, 427, 522
Sau3AI	GATC	2 cut(s)	70, 297
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	5 cut(s)	70, 80, 107, 242, 545
ScrFI	CCNGG	5 cut(s)	41, 149, 150, 177, 209
SduI	GDGCHC	3 cut(s)	144, 155, 345
SetI	ASST	8 cut(s)	24, 144, 198, 260, 404, 501, 526, 536
Sfr303I	CCGCGG	2 cut(s)	319, 420
SfuI	TTCGAA	1 cut(s)	171
SgrBI	CCGCGG	2 cut(s)	319, 420
SmaI	CCCGGG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	239, 509
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	5 cut(s)	39, 147, 148, 175, 207
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	6 cut(s)	144, 171, 236, 246, 300, 440
TasI	AATT	2 cut(s)	239, 509
TatI	WGTACW	2 cut(s)	219, 501
TauI	GCSGC	5 cut(s)	35, 54, 68, 419, 429
TseI	GCWGC	2 cut(s)	311, 521
TspGWI	ACGGA	1 cut(s)	241
TspMI	CCCGGG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	533
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.