Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011902

Physical Location & Seq

Genomic Coordinates Forward (+)

55553814 .. 55555858

Gene Structure 2045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGTTAGTAGATCAAACCAAGATCATTGCCGCCATTAAAGAAGCCGGTAATGTCAAGAGATTCTTCCCCTCGGAGTTTGGAAATGATGCTGATCGTGTTCATGCAGTTGAGCCAGCCAAATCTGCATTTGCGACCAAAGCGCAATTCCGGCGTGCTATAGAGGCTGAGGGGATACCCTACACATATGTCTCGAGCAACTGCTTTGCAGGCTATTTTCTACCCACATTGGCACAGCCAGGTGCTACTTCTCCACCAAGAGACAAAGTCATCATCGTAGGGGATAGAAATCCAAAGGCAATCTTTGTCAAGGAAGAGGACATCGGCACCTACACAATCCGAGCAGTTGATGACCCAAGAACACTGAACAAGGTCCTCTACCTCAAGCCTCCCAAAAACATTTACTCATTCAATGAACTGGTTGCCTTGTGGGAGAAGAAATTTGGCAAAGCCCTCGGGAAGGTCTATGTTCCAGAGGACAAACTCCTCAACGATATTATAGAGACCCCATTTCCCCAAAATGTGATATTGGCGATCAACCACTCTGTGTTTGTGAAAGGAGATCAAACCAACTTCGAGATTGAACCATCGTTCGGAGTCGAAGCTTCCGAGCTATACCCGGATGTTGAATACACAACTGTGGAGGACTACCTCGACCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000835 GO:0000836 GO:0000839 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009306 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031984 GO:0032940 GO:0032991 GO:0033036 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042538 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046486 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051716 GO:0071702 GO:0071704 GO:0071705 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sel1 TPR_3

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

5.1

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	2 - 218	1.6e-65	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18260 AT1G73570
fragaria_vesca	FvH4_5g17420
malus_domestica	MD06G1227600.v1.1 MD14G1236800.v1.1
prunus_persica	Prupe.5G234000_v2.0.a1 Prupe.5G234000_v2.0.a1
pyrus_communis	pycom14g19780
rosa_chinensis	RchiOBHm_Chr7g0178271
rosa_laevigata	RLG00000005457
rosa_multiflora	Rmu_sc0020850.1_g000001 Rmu_ssc0000283.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275020
rosa_rugosa	Rorug06G0415900
rosa_samantha	Rh7AG014700 Rh7BG014200 Rh7CG014200 Rh7DG014500
rosa_wichuraiana	Rw7G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	460, 593
AgsI	TTSAA	3 cut(s)	412, 584, 629
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AleI	CACNNNNGTG	1 cut(s)	638
AluBI	AGCT	2 cut(s)	605, 613
AluI	AGCT	2 cut(s)	605, 613
Alw26I	GTCTC	3 cut(s)	196, 255, 497
Ama87I	CYCGRG	2 cut(s)	193, 455
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	620
AvaI	CYCGRG	2 cut(s)	193, 455
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	326
BbvCI	CCTCAGC	1 cut(s)	168
BccI	CCATC	1 cut(s)	595
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	3 cut(s)	196, 255, 497
BfmI	CTRYAG	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	240, 620
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	193, 455
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	240, 620
BmsI	GCATC	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	620
BsaBI	GATNNNNATC	2 cut(s)	93, 288
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	72, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	460, 593
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	2 cut(s)	93, 288
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	72, 454
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	2 cut(s)	93, 288
BseLI	CCNNNNNNNGG	2 cut(s)	460, 593
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	326
BsiHKCI	CYCGRG	2 cut(s)	193, 455
BsiSI	CCGG	3 cut(s)	48, 151, 620
BslI	CCNNNNNNNGG	2 cut(s)	460, 593
BsmAI	GTCTC	3 cut(s)	196, 255, 497
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	2 cut(s)	193, 455
Bsp143I	GATC	5 cut(s)	13, 24, 94, 534, 562
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	72, 454
BssMI	GATC	5 cut(s)	13, 24, 94, 534, 562
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	117, 156, 211
BstDEI	CTNAG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	5 cut(s)	16, 27, 97, 537, 565
BstMAI	GTCTC	3 cut(s)	196, 255, 497
BstMBI	GATC	5 cut(s)	13, 24, 94, 534, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 140, 151, 164, 210
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	238, 618
BstSFI	CTRYAG	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	3 cut(s)	117, 156, 211
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	5 cut(s)	15, 26, 96, 536, 564
DpnII	GATC	5 cut(s)	13, 24, 94, 534, 562
DraIII	CACNNNGTG	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	373
Eco88I	CYCGRG	2 cut(s)	193, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	107
FaiI	YATR	7 cut(s)	105, 161, 187, 189, 468, 500, 616
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 287, 319
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	33
HapII	CCGG	3 cut(s)	48, 151, 620
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	2 cut(s)	63, 597
HpaII	CCGG	3 cut(s)	48, 151, 620
Hpy188I	TCNGA	4 cut(s)	76, 341, 596, 610
Hpy188III	TCNNGA	5 cut(s)	58, 193, 457, 473, 577
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4V	TGCA	4 cut(s)	4, 107, 128, 209
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 140, 151, 164, 210
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	5 cut(s)	13, 24, 94, 534, 562
LpnPI	CCDG	9 cut(s)	61, 129, 164, 195, 225, 252, 404, 486, 633
LweI	GCATC	1 cut(s)	79
MalI	GATC	5 cut(s)	15, 26, 96, 536, 564
MboI	GATC	5 cut(s)	13, 24, 94, 534, 562
MboII	GAAGA	3 cut(s)	58, 326, 448
MluCI	AATT	3 cut(s)	146, 440, 659
MlyI	GAGTC	1 cut(s)	606
MseI	TTAA	2 cut(s)	39, 667
MslI	CAYNNNNRTG	1 cut(s)	638
MspI	CCGG	3 cut(s)	48, 151, 620
MspR9I	CCNGG	2 cut(s)	240, 620
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	125, 140, 151, 164, 210
NciI	CCSGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	5 cut(s)	13, 24, 94, 534, 562
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	39, 667
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	5 cut(s)	13, 24, 94, 534, 562
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	2 cut(s)	240, 620
SetI	ASST	8 cut(s)	244, 332, 375, 384, 465, 607, 615, 654
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	193
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	193, 383
SmoI	CTYRAG	2 cut(s)	193, 383
Sse9I	AATT	3 cut(s)	146, 440, 659
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	238, 618
TaaI	ACNGT	1 cut(s)	640
TaqI	TCGA	4 cut(s)	194, 576, 600, 654
TasI	AATT	3 cut(s)	146, 440, 659
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	2 cut(s)	39, 667
Tru9I	TTAA	2 cut(s)	39, 667
TscAI	CASTG	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	92, 429
TspRI	CASTG	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.