Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000283.1

Orthogroup ID

OG0011902

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2244

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

gcaaaagagtactttgagaaggctgctgagaatcgagatgctggtggcgggcactataacttgggagtactctatctcaaagggattggggtaaaaaaagatgtgaaacttgcatgtcagtactttatagtggctgctaatgcaggtcaaccaaaggcattctaccagcttgcaaagatgtttcatgcaggagtggggcttaagaaaaatcttcccagggctactgtgttgtacaaactagttgctgaaagggggccatggagttccttgtccagatgggccctggagtcatacttaaagggggatgtggggaaggcatttttcttatactcaaggatggctgagttagggtatgaggtagcgcaaagtaacgctgcatggattcttgacaagtacggagaacatagcatgtgcatgggagaatctggcttttgtacagatgcagaaaggcatcagcgggcacattctttgtggtggcaagcatctgagcagggtaacgaacatgctgctttgctgattggggatgcatattactatggtcagggtactgagagggattttgaacgtgcagcagaggcttacaagcatgctaggtcccaatctaatgcacaagccatgttcaacctcggctacatgcatgagcatggacaaggattacctttggatctccatcttgccaaacgttactatgatcaagccctagagattgatccggcagcaaagttaccagtcacgctagcccttgcaagcttatggatacgaaagaattatgccgatggttttctggtccatttgatcgactcattgcctgaagtctatccaaaattggaagaatggatagatgacgtgttgcttgaggaaggaaatgcaacaatattgactctttttgtttgtctcctcactgtcctatatctccgtgagcgacaacgcaggcatgctgtagtagtccctgctggagtggctatgccgcaccaaccaaatgagcttgttgcacctgcacctgtcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000835 GO:0000836 GO:0000839 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009306 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031984 GO:0032940 GO:0032991 GO:0033036 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042538 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046486 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051716 GO:0071702 GO:0071704 GO:0071705 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sel1 TPR_3

Protein Analysis

336

Amino Acids

37.66

Weight (kDa)

6.53

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18260 AT1G73570
fragaria_vesca	FvH4_5g17420
malus_domestica	MD06G1227600.v1.1 MD14G1236800.v1.1
prunus_persica	Prupe.5G234000_v2.0.a1 Prupe.5G234000_v2.0.a1
pyrus_communis	pycom14g19780
rosa_chinensis	RchiOBHm_Chr7g0178271
rosa_laevigata	RLG00000005457
rosa_multiflora	Rmu_sc0020850.1_g000001 Rmu_ssc0000283.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275020
rosa_rugosa	Rorug06G0415900
rosa_samantha	Rh7AG014700 Rh7BG014200 Rh7CG014200 Rh7DG014500
rosa_wichuraiana	Rw7G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1003
Acc36I	ACCTGC	2 cut(s)	134, 1003
AciI	CCGC	3 cut(s)	48, 457, 968
AclI	AACGTT	1 cut(s)	682
AclWI	GGATC	2 cut(s)	672, 704
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	7 cut(s)	11, 69, 122, 233, 395, 436, 547
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	2 cut(s)	563, 622
AhlI	ACTAGT	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	847
AjnI	CCWGG	2 cut(s)	215, 282
AluBI	AGCT	3 cut(s)	169, 750, 985
AluI	AGCT	3 cut(s)	169, 750, 985
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	2 cut(s)	672, 704
AoxI	GGCC	2 cut(s)	254, 279
ApaI	GGGCCC	1 cut(s)	283
ApeKI	GCWGC	6 cut(s)	23, 134, 374, 506, 569, 716
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	5 cut(s)	254, 279, 280, 594, 787
AsuNHI	GCTAGC	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	594, 787
BaeGI	GKGCMC	3 cut(s)	54, 283, 463
BanII	GRGCYC	1 cut(s)	283
BbvI	GCAGC	6 cut(s)	10, 121, 361, 493, 581, 728
BccI	CCATC	4 cut(s)	270, 331, 678, 770
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	2 cut(s)	217, 284
BciVI	GTATCC	1 cut(s)	750
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	899
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	4 cut(s)	239, 591, 701, 737
BfmI	CTRYAG	1 cut(s)	939
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	2 cut(s)	134, 1003
BfuI	GTATCC	1 cut(s)	750
BisI	GCNGC	7 cut(s)	24, 135, 375, 507, 570, 717, 968
BlsI	GCNGC	7 cut(s)	25, 136, 376, 508, 571, 718, 969
BmcAI	AGTACT	3 cut(s)	11, 69, 122
Bme1390I	CCNGG	2 cut(s)	217, 284
Bme18I	GGWCC	2 cut(s)	594, 787
BmgBI	CACGTC	1 cut(s)	847
BmgT120I	GGNCC	5 cut(s)	254, 279, 280, 594, 787
BmiI	GGNNCC	3 cut(s)	255, 281, 596
BmrFI	CCNGG	2 cut(s)	217, 284
BmsI	GCATC	5 cut(s)	28, 430, 460, 491, 514
BmtI	GCTAGC	1 cut(s)	740
BpmI	CTGGAG	2 cut(s)	305, 975
BpuEI	CTTGAG	2 cut(s)	316, 875
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	5 cut(s)	215, 216, 257, 282, 625
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	803
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	217, 284
BseDI	CCNNGG	5 cut(s)	215, 216, 257, 282, 625
BseGI	GGATG	3 cut(s)	310, 342, 529
BseJI	GATNNNNATC	1 cut(s)	669
BseMI	GCAATG	1 cut(s)	803
BseMII	CTCAG	4 cut(s)	18, 333, 477, 540
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	1 cut(s)	887
BseSI	GKGCMC	3 cut(s)	54, 283, 463
BseXI	GCAGC	6 cut(s)	10, 121, 361, 493, 581, 728
BsgI	GTGCAG	2 cut(s)	588, 981
BshFI	GGCC	2 cut(s)	256, 281
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	2 cut(s)	580, 932
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	2 cut(s)	580, 932
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	256, 281
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	54, 283, 463
Bsp1407I	TGTACA	2 cut(s)	231, 434
Bsp143I	GATC	4 cut(s)	664, 691, 709, 795
Bsp19I	CCATGG	1 cut(s)	257
BspACI	CCGC	3 cut(s)	48, 457, 968
BspANI	GGCC	2 cut(s)	256, 281
BspCNI	CTCAG	4 cut(s)	19, 334, 478, 541
BspLI	GGNNCC	3 cut(s)	255, 281, 596
BspMI	ACCTGC	2 cut(s)	134, 1003
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	2 cut(s)	672, 704
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	803
BsrGI	TGTACA	2 cut(s)	231, 434
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	5 cut(s)	215, 216, 257, 282, 625
BssMI	GATC	4 cut(s)	664, 691, 709, 795
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	217, 284
Bst4CI	ACNGT	2 cut(s)	226, 904
BstAFI	CTTAAG	1 cut(s)	200
BstAUI	TGTACA	2 cut(s)	231, 434
BstC8I	GCNNGC	9 cut(s)	50, 171, 459, 480, 588, 738, 748, 932, 936
BstDEI	CTNAG	4 cut(s)	27, 342, 486, 549
BstDSI	CCRYGG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	310, 342, 529
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	4 cut(s)	667, 694, 712, 798
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	4 cut(s)	664, 691, 709, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 575, 959
BstNI	CCWGG	2 cut(s)	217, 284
BstNSI	RCATGY	6 cut(s)	117, 412, 506, 590, 637, 938
BstSCI	CCNGG	2 cut(s)	215, 282
BstSFI	CTRYAG	1 cut(s)	939
BstSLI	GKGCMC	3 cut(s)	54, 283, 463
BstV1I	GCAGC	6 cut(s)	10, 121, 361, 493, 581, 728
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	2 cut(s)	256, 281
BtgI	CCRYGG	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	847
BtsCI	GGATG	3 cut(s)	310, 342, 529
BtsIMutI	CAGTG	1 cut(s)	900
BveI	ACCTGC	2 cut(s)	134, 1003
Cac8I	GCNNGC	9 cut(s)	50, 171, 459, 480, 588, 738, 748, 932, 936
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	5 cut(s)	254, 279, 280, 594, 787
Csp6I	GTAC	7 cut(s)	10, 68, 121, 232, 394, 435, 546
CviQI	GTAC	7 cut(s)	10, 68, 121, 232, 394, 435, 546
DdeI	CTNAG	4 cut(s)	27, 342, 486, 549
DpnI	GATC	4 cut(s)	666, 693, 711, 797
DpnII	GATC	4 cut(s)	664, 691, 709, 795
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	594, 787
Eco57I	CTGAAG	1 cut(s)	831
EcoO109I	RGGNCCY	2 cut(s)	280, 594
EcoRII	CCWGG	2 cut(s)	215, 282
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	2 cut(s)	529, 639
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	257
FaqI	GGGAC	2 cut(s)	580, 932
FauI	CCCGC	2 cut(s)	41, 450
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	7 cut(s)	24, 135, 375, 507, 570, 717, 968
FokI	GGATG	3 cut(s)	317, 349, 536
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	7 cut(s)	24, 135, 375, 507, 570, 717, 968
FspBI	CTAG	4 cut(s)	239, 591, 701, 737
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	7 cut(s)	24, 135, 375, 507, 570, 717, 968
GsuI	CTGGAG	2 cut(s)	305, 975
HaeIII	GGCC	2 cut(s)	256, 281
HapII	CCGG	1 cut(s)	713
HhaI	GCGC	1 cut(s)	364
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	6 cut(s)	31, 287, 382, 422, 800, 880
HpaII	CCGG	1 cut(s)	713
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	35, 273, 386
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	13, 307, 854
HpyCH4III	ACNGT	2 cut(s)	226, 904
HpyCH4IV	ACGT	3 cut(s)	565, 682, 846
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 575, 959
HpyF3I	CTNAG	4 cut(s)	27, 342, 486, 549
HpySE526I	ACGT	3 cut(s)	565, 682, 846
HspAI	GCGC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	4 cut(s)	664, 691, 709, 795
Lsp1109I	GCAGC	6 cut(s)	10, 121, 361, 493, 581, 728
LweI	GCATC	5 cut(s)	28, 430, 460, 491, 514
MaeI	CTAG	4 cut(s)	239, 591, 701, 737
MaeII	ACGT	3 cut(s)	565, 682, 846
MaeIII	GTNAC	5 cut(s)	368, 494, 683, 723, 730
MalI	GATC	4 cut(s)	666, 693, 711, 797
MboI	GATC	4 cut(s)	664, 691, 709, 795
MboII	GAAGA	2 cut(s)	203, 842
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	3 cut(s)	54, 283, 463
MluCI	AATT	2 cut(s)	766, 824
MlyI	GAGTC	3 cut(s)	296, 794, 874
MnlI	CCTC	6 cut(s)	349, 546, 568, 635, 850, 908
Mph1103I	ATGCAT	2 cut(s)	529, 639
MseI	TTAA	2 cut(s)	201, 296
MslI	CAYNNNNRTG	2 cut(s)	413, 642
MspA1I	CMGCKG	1 cut(s)	457
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	2 cut(s)	217, 284
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	217, 284
MwoI	GCNNNNNNNGC	3 cut(s)	140, 575, 959
NcoI	CCATGG	1 cut(s)	257
NdeII	GATC	4 cut(s)	664, 691, 709, 795
NheI	GCTAGC	1 cut(s)	736
NlaIV	GGNNCC	3 cut(s)	255, 281, 596
NmeAIII	GCCGAG	1 cut(s)	606
NmuCI	GTSAC	1 cut(s)	730
NsiI	ATGCAT	2 cut(s)	529, 639
NspI	RCATGY	6 cut(s)	117, 412, 506, 590, 637, 938
PaeI	GCATGC	2 cut(s)	590, 938
PaqCI	CACCTGC	1 cut(s)	1003
PasI	CCCWGGG	1 cut(s)	216
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	31, 382, 422
PkrI	GCNGC	7 cut(s)	25, 136, 376, 508, 571, 718, 969
PleI	GAGTC	3 cut(s)	295, 794, 874
PpsI	GAGTC	3 cut(s)	295, 794, 874
PpuMI	RGGWCCY	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	682
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	215, 282
PspGI	CCWGG	2 cut(s)	215, 282
PspN4I	GGNNCC	3 cut(s)	255, 281, 596
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	5 cut(s)	254, 279, 280, 594, 787
PspPPI	RGGWCCY	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	7 cut(s)	11, 69, 122, 233, 395, 436, 547
RsaNI	GTAC	7 cut(s)	10, 68, 121, 232, 394, 435, 546
RseI	CAYNNNNRTG	2 cut(s)	413, 642
SaqAI	TTAA	2 cut(s)	201, 296
SatI	GCNGC	7 cut(s)	24, 135, 375, 507, 570, 717, 968
Sau3AI	GATC	4 cut(s)	664, 691, 709, 795
Sau96I	GGNCC	5 cut(s)	254, 279, 280, 594, 787
ScaI	AGTACT	3 cut(s)	11, 69, 122
SchI	GAGTC	3 cut(s)	296, 794, 874
ScrFI	CCNGG	2 cut(s)	217, 284
SduI	GDGCHC	3 cut(s)	54, 283, 463
SfaNI	GCATC	5 cut(s)	28, 430, 460, 491, 514
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	2 cut(s)	594, 787
SmiMI	CAYNNNNRTG	2 cut(s)	413, 642
SmlI	CTYRAG	3 cut(s)	200, 331, 854
SmoI	CTYRAG	3 cut(s)	200, 331, 854
SpeI	ACTAGT	1 cut(s)	238
SphI	GCATGC	2 cut(s)	590, 938
Sse9I	AATT	2 cut(s)	766, 824
SsiI	CCGC	3 cut(s)	48, 457, 968
SspI	AATATT	1 cut(s)	876
SspMI	CTAG	4 cut(s)	239, 591, 701, 737
StyD4I	CCNGG	2 cut(s)	215, 282
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	226, 904
TaiI	ACGT	3 cut(s)	568, 685, 849
TaqI	TCGA	2 cut(s)	34, 798
TasI	AATT	2 cut(s)	766, 824
TatI	WGTACW	5 cut(s)	9, 67, 120, 231, 434
TauI	GCSGC	1 cut(s)	970
TfiI	GAWTC	3 cut(s)	31, 382, 422
Tru1I	TTAA	2 cut(s)	201, 296
Tru9I	TTAA	2 cut(s)	201, 296
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	6 cut(s)	23, 134, 374, 506, 569, 716
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	411, 905
TspRI	CASTG	1 cut(s)	907
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	594, 787
XceI	RCATGY	6 cut(s)	117, 412, 506, 590, 637, 938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	4 cut(s)	239, 591, 701, 737
ZrmI	AGTACT	3 cut(s)	11, 69, 122
Zsp2I	ATGCAT	2 cut(s)	529, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.