Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011902

Physical Location & Seq

Genomic Coordinates Reverse (-)

66585423 .. 66588967

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGAATCTGGTGAATCGGAAACTGGTTTTCGCGGCGGCGGCGGTTTTCTCTCTCTCCGCCGTCACGATTTTCGCGCGGCCGTTTGTTCTGGTTCTCTCACAAGACGACCTCTTAAACGCTGCTAACCCGACCGACGGCGGCGACTCTCCCGCCACCGATCCGACTCAGAATGACTCGGCCGACTGGGACGAGTTCGGCGACTCGGCGTATCCGCAATCCGAGGAGGAGCTCGACCCGGGCTCGTGGCGTCCCATCTTTGAACCCGACCCGTTCAAGCCCGACCTGTCCGCCCACCCGGACAAGGAGTACTACTCCACCGTGTCGAAATTGGTCGACTCCGTCAGCTCCGGCGACACGGCGCTCATGGAGGACGCGGTTTCCGAGATCGAGGCGTCCGCTGCCCGCGGTGTTCATCACGCGCGGTCCGTGCTCGGGTTTCTGTTCGGCACGGGACAGATGAGGAAGCAGAACAAGGCCAAGGCGTTCACGTACCATTACTTCGCCGCAGACGGCGGCAATATGCAGTCAAAGATGGCTCTGGCTTATACTTACTTTAGGCAAGATATGTTTGAGAAAGCGGTGAAGCTGTACTCGGAATTAGCCGAGGCAGCTGTGAATAGCTTCTTGATTTCAAAGGACTCCCCGGTGATTGAGCCGGTGAGGATCCACAATGGAGCTGAAGAGAATAAGGAGGCATTGAGGAAAAGCCGAGGCGAAGAAGATGAGGACTTTCAGATTCTGGAGTATCAGGCTCAGAAGGGGAATTCTCTTGCAATGTATAAGATTGGCCTCTTTTACTATTTCGGGCTCAGAGGGTTGCGCCGTGACCATGCTAAGGCATTGTCCTGGTTTCTCAAGTCTGTGGAGAAGGGAGAGCCTAGGGCTATGGAGTTTCTTGGTGAGATTTATGCTAGAGGAGCTGGGGTCGAGAGGAATTACACTAAGGCTCTGGAGTGGCTTGCACTAGCATCTAAACAAGAACTGTATTCAGCTTATAATGGGATGGGCTATTTGTATGTTAAAGGATATGGAGTAGAGAAGAAGAACTACACTAAGGCAAAAGAGTACTTTGAGAAGGCTGCTGAGAATCGAGATGCTGGCGGGCACTATAACTTGGGAGTACTTTATCTCAAAGGGATTGGGGTAAAAAGAGATGTGAAACTTGCATGCCAGTACTTTATAGTGGCTGCTAATGCAGGTCAACCAAAGGCATTCTACCAGCTTGCAAAGATGTTTCATGCTGGAGTGGGGCTTAAGAAAAATCTTCCCAGGGCCACTGTGTTGTACAAACTAGTTGCTGAAAGGGGGCCATGGAGTTCCTTGTCCAGATGGGCACTGGAGTCATACTTAAAGGGGGATGTGGGGAAGGCATTTTTCTTGTACTCAAGGATGGCTGAGTTAGGGTATGAGGTAGCGCAAAGTAACGCTGCATGGATTCTTGACAAGTATGGAGAACATAGCATGTGCATGGGAGAATCTGGCTTTTGTACAGATGCAGAAAGGCATCAGCGGGCACATTCTTTGTGGTGGCAAGCATCTGAGCAGGGTAACGAACATGCTGCTTTGCTGATTGGGGATGCATATTACTATGGTCAGGGTACTGAGAGAGATTACGAACGTGCGGCAGAGGCTTACAAGCATGCTAGGTCCCAATCTAATGCACAAGCCATGTTCAACCTAGGCTACATGCATGAGCATGGACAAGGATTACCTTTGGATCTCCATCTTGCCAAACGTTACTATGATCAAGCCCTAGAGATTGATGCGGCAGCAAAGTTACCAGTCACACTAGCCCTTGCAAGCTTATGGATACGAAAGAATTATGCCGATGGTTTTCTGGTCCATTTGATTGACTCATTGCCTGAAGTCTATCCAAAATTGGAAGAATGGATAGATGATGTGTTGCTTGAGGAAGGAAATGCAACAATATTGACTCTTTTTGTTTGCCTCCTCACTGTCCTATATCTCCGTGAGAGACAACGCAGGCATGCTGTTGTAGTCCCTGCTGGAGTGGCTATGCCGCACCAACCAAATGAGCTTGTTGCACCTGCACCTGTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000835 GO:0000836 GO:0000839 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009306 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031984 GO:0032940 GO:0032991 GO:0033036 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042538 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046486 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051716 GO:0071702 GO:0071704 GO:0071705 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sel1 TPR_3

Protein Analysis

687

Amino Acids

76.92

Weight (kDa)

5.87

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sel1	PF08238	257 - 291	1.8e-06	Sel1 repeat
Sel1	PF08238	293 - 326	5e-07	Sel1 repeat
Sel1	PF08238	331 - 363	5.6e-07	Sel1 repeat
Sel1	PF08238	369 - 400	5.7e-06	Sel1 repeat
Sel1	PF08238	554 - 585	5.4e-07	Sel1 repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18260 AT1G73570
fragaria_vesca	FvH4_5g17420
malus_domestica	MD06G1227600.v1.1 MD14G1236800.v1.1
prunus_persica	Prupe.5G234000_v2.0.a1 Prupe.5G234000_v2.0.a1
pyrus_communis	pycom14g19780
rosa_chinensis	RchiOBHm_Chr7g0178271
rosa_laevigata	RLG00000005457
rosa_multiflora	Rmu_sc0020850.1_g000001 Rmu_ssc0000283.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275020
rosa_rugosa	Rorug06G0415900
rosa_samantha	Rh7AG014700 Rh7BG014200 Rh7CG014200 Rh7DG014500
rosa_wichuraiana	Rw7G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
AarI	CACCTGC	1 cut(s)	2056
Acc36I	ACCTGC	2 cut(s)	1187, 2056
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	7 cut(s)	32, 74, 76, 374, 405, 419, 421
AclI	AACGTT	1 cut(s)	1735
AclWI	GGATC	4 cut(s)	152, 658, 671, 1725
AcoI	YGGCCR	2 cut(s)	77, 177
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	2 cut(s)	699, 1884
AcyI	GRCGYC	2 cut(s)	247, 392
AfiI	CCNNNNNNNGG	4 cut(s)	134, 301, 432, 835
AflII	CTTAAG	1 cut(s)	1253
AgsI	TTSAA	4 cut(s)	260, 274, 633, 1675
AhlI	ACTAGT	1 cut(s)	1291
AjnI	CCWGG	2 cut(s)	845, 1268
Alw21I	GWGCWC	2 cut(s)	231, 432
Alw26I	GTCTC	1 cut(s)	1969
AlwI	GGATC	4 cut(s)	152, 658, 671, 1725
AlwNI	CAGNNNCTG	1 cut(s)	739
Ama87I	CYCGRG	2 cut(s)	235, 431
AoxI	GGCC	6 cut(s)	77, 177, 474, 787, 1272, 1307
ApeKI	GCWGC	8 cut(s)	119, 398, 608, 1079, 1187, 1427, 1559, 1769
ApoI	RAATTY	1 cut(s)	763
Asp700I	GAANNNNTTC	1 cut(s)	620
AspA2I	CCTAGG	2 cut(s)	878, 1678
AspLEI	GCGC	5 cut(s)	76, 361, 421, 822, 1417
AspS9I	GGNCC	5 cut(s)	423, 1272, 1307, 1647, 1840
AsuC2I	CCSGG	4 cut(s)	236, 237, 296, 644
AsuHPI	GGTGA	5 cut(s)	22, 592, 658, 670, 911
AvaI	CYCGRG	2 cut(s)	235, 431
AvaII	GGWCC	3 cut(s)	423, 1647, 1840
AvrII	CCTAGG	2 cut(s)	878, 1678
BaeGI	GKGCMC	3 cut(s)	1107, 1336, 1516
BamHI	GGATCC	1 cut(s)	663
BanII	GRGCYC	3 cut(s)	231, 242, 810
BarI	GAAGNNNNNNTAC	4 cut(s)	482, 514, 1031, 1063
BauI	CACGAG	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	231, 432
BbvI	GCAGC	8 cut(s)	106, 385, 620, 1066, 1174, 1414, 1546, 1781
BccI	CCATC	7 cut(s)	260, 526, 997, 1323, 1384, 1731, 1823
BceAI	ACGGC	6 cut(s)	44, 64, 151, 372, 526, 807
BcgI	CGANNNNNNTGC	2 cut(s)	1541, 1575
BciT130I	CCWGG	2 cut(s)	847, 1270
BciVI	GTATCC	2 cut(s)	219, 1803
BclI	TGATCA	1 cut(s)	1744
BcnI	CCSGG	4 cut(s)	236, 237, 296, 644
BcoDI	GTCTC	1 cut(s)	1969
BcuI	ACTAGT	1 cut(s)	1291
BfaI	CTAG	9 cut(s)	879, 912, 965, 1292, 1644, 1679, 1754, 1790, 2062
BfoI	RGCGCY	1 cut(s)	362
BfrI	CTTAAG	1 cut(s)	1253
BfuAI	ACCTGC	2 cut(s)	1187, 2056
BfuI	GTATCC	2 cut(s)	219, 1803
BlnI	CCTAGG	2 cut(s)	878, 1678
BmcAI	AGTACT	4 cut(s)	308, 1067, 1122, 1175
Bme1390I	CCNGG	6 cut(s)	236, 237, 296, 644, 847, 1270
Bme18I	GGWCC	3 cut(s)	423, 1647, 1840
BmeT110I	CYCGRG	2 cut(s)	235, 431
BmgT120I	GGNCC	5 cut(s)	423, 1272, 1307, 1647, 1840
BmiI	GGNNCC	3 cut(s)	665, 1308, 1649
BmrFI	CCNGG	6 cut(s)	236, 237, 296, 644, 847, 1270
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	7 cut(s)	977, 1084, 1483, 1513, 1544, 1567, 1753
BmuI	ACTGGG	1 cut(s)	193
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	5 cut(s)	761, 971, 1263, 1358, 2028
Bpu10I	CCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	3 cut(s)	839, 1369, 1928
BpuMI	CCSGG	4 cut(s)	236, 237, 296, 644
BsaAI	YACGTR	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	1722
BsaHI	GRCGYC	2 cut(s)	247, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 301, 432, 835
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	5 cut(s)	27, 188, 1171, 1341, 1781
Bse3DI	GCAATG	2 cut(s)	780, 1856
Bse8I	GATNNNNATC	1 cut(s)	1722
BseBI	CCWGG	2 cut(s)	847, 1270
BseGI	GGATG	4 cut(s)	1008, 1363, 1395, 1582
BseJI	GATNNNNATC	1 cut(s)	1722
BseLI	CCNNNNNNNGG	4 cut(s)	134, 301, 432, 835
BseMI	GCAATG	2 cut(s)	780, 1856
BseMII	CTCAG	7 cut(s)	179, 767, 823, 1074, 1386, 1530, 1593
BseNI	ACTGG	5 cut(s)	27, 188, 1171, 1341, 1781
BseRI	GAGGAG	4 cut(s)	236, 239, 930, 1940
BseSI	GKGCMC	3 cut(s)	1107, 1336, 1516
BseX3I	CGGCCG	2 cut(s)	77, 177
BseXI	GCAGC	8 cut(s)	106, 385, 620, 1066, 1174, 1414, 1546, 1781
BseYI	CCCAGC	1 cut(s)	920
BsgI	GTGCAG	1 cut(s)	2034
Bsh1236I	CGCG	7 cut(s)	32, 74, 76, 374, 405, 419, 421
Bsh1285I	CGRYCG	3 cut(s)	80, 132, 180
BshFI	GGCC	6 cut(s)	79, 179, 476, 789, 1274, 1309
BsiEI	CGRYCG	3 cut(s)	80, 132, 180
BsiHKAI	GWGCWC	2 cut(s)	231, 432
BsiHKCI	CYCGRG	2 cut(s)	235, 431
BsiSI	CCGG	5 cut(s)	236, 296, 348, 644, 656
BslFI	GGGAC	5 cut(s)	200, 234, 465, 1633, 1985
BslI	CCNNNNNNNGG	4 cut(s)	134, 301, 432, 835
BsmAI	GTCTC	1 cut(s)	1969
BsmFI	GGGAC	5 cut(s)	200, 234, 465, 1633, 1985
BsmI	GAATGC	1 cut(s)	1211
BsnI	GGCC	6 cut(s)	79, 179, 476, 789, 1274, 1309
BsoBI	CYCGRG	2 cut(s)	235, 431
Bsp1286I	GDGCHC	7 cut(s)	231, 242, 432, 810, 1107, 1336, 1516
Bsp1407I	TGTACA	2 cut(s)	1284, 1487
Bsp143I	GATC	5 cut(s)	157, 384, 663, 1717, 1744
Bsp19I	CCATGG	1 cut(s)	1310
BspANI	GGCC	6 cut(s)	79, 179, 476, 789, 1274, 1309
BspCNI	CTCAG	7 cut(s)	178, 766, 822, 1075, 1387, 1531, 1594
BspFNI	CGCG	7 cut(s)	32, 74, 76, 374, 405, 419, 421
BspLI	GGNNCC	3 cut(s)	665, 1308, 1649
BspMI	ACCTGC	2 cut(s)	1187, 2056
BspPI	GGATC	4 cut(s)	152, 658, 671, 1725
BspTI	CTTAAG	1 cut(s)	1253
BsrDI	GCAATG	2 cut(s)	780, 1856
BsrFI	RCCGGY	1 cut(s)	655
BsrGI	TGTACA	2 cut(s)	1284, 1487
BsrI	ACTGG	5 cut(s)	27, 188, 1171, 1341, 1781
BssAI	RCCGGY	1 cut(s)	655
BssMI	GATC	5 cut(s)	157, 384, 663, 1717, 1744
BssNI	GRCGYC	2 cut(s)	247, 392
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	4 cut(s)	477, 878, 1310, 1678
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	2 cut(s)	847, 1270
Bst4CI	ACNGT	4 cut(s)	319, 984, 1279, 1957
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	2 cut(s)	247, 392
BstAFI	CTTAAG	1 cut(s)	1253
BstAUI	TGTACA	2 cut(s)	1284, 1487
BstBAI	YACGTR	1 cut(s)	489
BstDSI	CCRYGG	2 cut(s)	403, 1310
BstF5I	GGATG	4 cut(s)	1008, 1363, 1395, 1582
BstFNI	CGCG	7 cut(s)	32, 74, 76, 374, 405, 419, 421
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	5 cut(s)	76, 361, 421, 822, 1417
BstKTI	GATC	5 cut(s)	160, 387, 666, 1720, 1747
BstMAI	GTCTC	1 cut(s)	1969
BstMBI	GATC	5 cut(s)	157, 384, 663, 1717, 1744
BstMCI	CGRYCG	3 cut(s)	80, 132, 180
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 398, 427, 608, 917, 1193, 1628, 2012
BstNI	CCWGG	2 cut(s)	847, 1270
BstNSI	RCATGY	6 cut(s)	1170, 1465, 1559, 1643, 1690, 1991
BstSCI	CCNGG	6 cut(s)	234, 235, 294, 642, 845, 1268
BstSLI	GKGCMC	3 cut(s)	1107, 1336, 1516
BstUI	CGCG	7 cut(s)	32, 74, 76, 374, 405, 419, 421
BstV1I	GCAGC	8 cut(s)	106, 385, 620, 1066, 1174, 1414, 1546, 1781
BstX2I	RGATCY	2 cut(s)	663, 1717
BstYI	RGATCY	2 cut(s)	663, 1717
BstZI	CGGCCG	2 cut(s)	77, 177
BsuI	GTATCC	2 cut(s)	219, 1803
BsuRI	GGCC	6 cut(s)	79, 179, 476, 789, 1274, 1309
BtgI	CCRYGG	2 cut(s)	403, 1310
BtsCI	GGATG	4 cut(s)	1008, 1363, 1395, 1582
BtsIMutI	CAGTG	3 cut(s)	1275, 1334, 1953
BveI	ACCTGC	2 cut(s)	1187, 2056
CaiI	CAGNNNCTG	1 cut(s)	739
CfoI	GCGC	5 cut(s)	76, 361, 421, 822, 1417
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	5 cut(s)	423, 1272, 1307, 1647, 1840
Cfr42I	CCGCGG	1 cut(s)	406
Cfr9I	CCCGGG	1 cut(s)	235
CpoI	CGGWCCG	1 cut(s)	423
CseI	GACGC	3 cut(s)	236, 380, 381
CspI	CGGWCCG	1 cut(s)	423
DpnI	GATC	5 cut(s)	159, 386, 665, 1719, 1746
DpnII	GATC	5 cut(s)	157, 384, 663, 1717, 1744
EaeI	YGGCCR	2 cut(s)	77, 177
EagI	CGGCCG	2 cut(s)	77, 177
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	2 cut(s)	46, 277
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	2 cut(s)	77, 177
Eco130I	CCWWGG	4 cut(s)	477, 878, 1310, 1678
Eco24I	GRGCYC	3 cut(s)	231, 242, 810
Eco47I	GGWCC	3 cut(s)	423, 1647, 1840
Eco52I	CGGCCG	2 cut(s)	77, 177
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	699, 1884
Eco88I	CYCGRG	2 cut(s)	235, 431
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	1647
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	2 cut(s)	845, 1268
EcoT14I	CCWWGG	4 cut(s)	477, 878, 1310, 1678
EcoT22I	ATGCAT	2 cut(s)	1582, 1692
EcoT38I	GRGCYC	3 cut(s)	231, 242, 810
ErhI	CCWWGG	4 cut(s)	477, 878, 1310, 1678
FaqI	GGGAC	5 cut(s)	200, 234, 465, 1633, 1985
FauI	CCCGC	4 cut(s)	157, 410, 1094, 1503
FbaI	TGATCA	1 cut(s)	1744
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	4 cut(s)	1015, 1370, 1402, 1589
FriOI	GRGCYC	3 cut(s)	231, 242, 810
FspBI	CTAG	9 cut(s)	879, 912, 965, 1292, 1644, 1679, 1754, 1790, 2062
GlaI	GCGC	5 cut(s)	75, 360, 420, 821, 1416
GsaI	CCCAGC	1 cut(s)	924
GsuI	CTGGAG	5 cut(s)	761, 971, 1263, 1358, 2028
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	6 cut(s)	79, 179, 476, 789, 1274, 1309
HapII	CCGG	5 cut(s)	236, 296, 348, 644, 656
HgaI	GACGC	3 cut(s)	236, 380, 381
HhaI	GCGC	5 cut(s)	76, 361, 421, 822, 1417
Hin1I	GRCGYC	2 cut(s)	247, 392
Hin6I	GCGC	5 cut(s)	74, 359, 419, 820, 1415
HinP1I	GCGC	5 cut(s)	74, 359, 419, 820, 1415
HincII	GTYRAC	2 cut(s)	334, 1202
HindII	GTYRAC	2 cut(s)	334, 1202
HindIII	AAGCTT	1 cut(s)	1801
HpaII	CCGG	5 cut(s)	236, 296, 348, 644, 656
HphI	GGTGA	5 cut(s)	22, 592, 658, 670, 911
Hpy166II	GTNNAC	3 cut(s)	334, 486, 1202
Hpy188III	TCNNGA	8 cut(s)	64, 625, 740, 928, 950, 1091, 1326, 1439
Hpy8I	GTNNAC	3 cut(s)	334, 486, 1202
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	751, 862, 1069, 1360, 1907
HpyCH4III	ACNGT	4 cut(s)	319, 984, 1279, 1957
HpyCH4IV	ACGT	3 cut(s)	488, 1618, 1735
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 398, 427, 608, 917, 1193, 1628, 2012
HpySE526I	ACGT	3 cut(s)	488, 1618, 1735
Hsp92I	GRCGYC	2 cut(s)	247, 392
HspAI	GCGC	5 cut(s)	74, 359, 419, 820, 1415
Ksp22I	TGATCA	1 cut(s)	1744
KspI	CCGCGG	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	157, 384, 663, 1717, 1744
LmnI	GCTCC	4 cut(s)	226, 350, 674, 917
Lsp1109I	GCAGC	8 cut(s)	106, 385, 620, 1066, 1174, 1414, 1546, 1781
LweI	GCATC	7 cut(s)	977, 1084, 1483, 1513, 1544, 1567, 1753
MaeI	CTAG	9 cut(s)	879, 912, 965, 1292, 1644, 1679, 1754, 1790, 2062
MaeII	ACGT	3 cut(s)	488, 1618, 1735
MaeIII	GTNAC	7 cut(s)	61, 824, 1421, 1547, 1736, 1776, 1783
MalI	GATC	5 cut(s)	159, 386, 665, 1719, 1746
MboI	GATC	5 cut(s)	157, 384, 663, 1717, 1744
MboII	GAAGA	7 cut(s)	692, 728, 731, 1051, 1054, 1256, 1895
MflI	RGATCY	2 cut(s)	663, 1717
MhlI	GDGCHC	7 cut(s)	231, 242, 432, 810, 1107, 1336, 1516
MluCI	AATT	6 cut(s)	326, 596, 763, 934, 1819, 1877
MlyI	GAGTC	9 cut(s)	137, 157, 167, 194, 329, 632, 1349, 1847, 1927
MmeI	TCCRAC	1 cut(s)	185
Mph1103I	ATGCAT	2 cut(s)	1582, 1692
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	4 cut(s)	113, 1020, 1254, 1349
MslI	CAYNNNNRTG	2 cut(s)	1466, 1695
MspA1I	CMGCKG	4 cut(s)	398, 405, 611, 1510
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	5 cut(s)	236, 296, 348, 644, 656
MspR9I	CCNGG	6 cut(s)	236, 237, 296, 644, 847, 1270
Mva1269I	GAATGC	1 cut(s)	1211
MvaI	CCWGG	2 cut(s)	847, 1270
MvnI	CGCG	7 cut(s)	32, 74, 76, 374, 405, 419, 421
MwoI	GCNNNNNNNGC	8 cut(s)	38, 398, 427, 608, 917, 1193, 1628, 2012
NciI	CCSGG	4 cut(s)	236, 237, 296, 644
NcoI	CCATGG	1 cut(s)	1310
NdeII	GATC	5 cut(s)	157, 384, 663, 1717, 1744
NlaIV	GGNNCC	3 cut(s)	665, 1308, 1649
NmeAIII	GCCGAG	4 cut(s)	155, 182, 628, 734
NmuCI	GTSAC	3 cut(s)	61, 824, 1783
NsiI	ATGCAT	2 cut(s)	1582, 1692
NspI	RCATGY	6 cut(s)	1170, 1465, 1559, 1643, 1690, 1991
PaeI	GCATGC	3 cut(s)	1170, 1643, 1991
PaqCI	CACCTGC	1 cut(s)	2056
PasI	CCCWGGG	1 cut(s)	1269
PcsI	WCGNNNNNNNCGW	3 cut(s)	195, 378, 423
PctI	GAATGC	1 cut(s)	1211
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	6 cut(s)	4, 13, 736, 1087, 1435, 1475
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	9 cut(s)	137, 157, 167, 194, 329, 632, 1348, 1847, 1927
PpsI	GAGTC	9 cut(s)	137, 157, 167, 194, 329, 632, 1348, 1847, 1927
Ppu21I	YACGTR	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	1647
PsiI	TTATAA	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	1735
Psp5II	RGGWCCY	1 cut(s)	1647
Psp6I	CCWGG	2 cut(s)	845, 1268
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	2 cut(s)	845, 1268
PspN4I	GGNNCC	3 cut(s)	665, 1308, 1649
PspPI	GGNCC	5 cut(s)	423, 1272, 1307, 1647, 1840
PspPPI	RGGWCCY	1 cut(s)	1647
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	2 cut(s)	663, 1717
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	611
RseI	CAYNNNNRTG	2 cut(s)	1466, 1695
Rsr2I	CGGWCCG	1 cut(s)	423
RsrII	CGGWCCG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	113, 1020, 1254, 1349
Sau3AI	GATC	5 cut(s)	157, 384, 663, 1717, 1744
Sau96I	GGNCC	5 cut(s)	423, 1272, 1307, 1647, 1840
ScaI	AGTACT	4 cut(s)	308, 1067, 1122, 1175
SchI	GAGTC	9 cut(s)	137, 157, 167, 194, 329, 632, 1349, 1847, 1927
ScrFI	CCNGG	6 cut(s)	236, 237, 296, 644, 847, 1270
SduI	GDGCHC	7 cut(s)	231, 242, 432, 810, 1107, 1336, 1516
SfaNI	GCATC	7 cut(s)	977, 1084, 1483, 1513, 1544, 1567, 1753
Sfr303I	CCGCGG	1 cut(s)	406
SgrBI	CCGCGG	1 cut(s)	406
SinI	GGWCC	3 cut(s)	423, 1647, 1840
SmaI	CCCGGG	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	1466, 1695
SmlI	CTYRAG	4 cut(s)	854, 1253, 1384, 1907
SmoI	CTYRAG	4 cut(s)	854, 1253, 1384, 1907
SpeI	ACTAGT	1 cut(s)	1291
SphI	GCATGC	3 cut(s)	1170, 1643, 1991
Sse9I	AATT	6 cut(s)	326, 596, 763, 934, 1819, 1877
SspI	AATATT	1 cut(s)	1929
SspMI	CTAG	9 cut(s)	879, 912, 965, 1292, 1644, 1679, 1754, 1790, 2062
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	6 cut(s)	234, 235, 294, 642, 845, 1268
StyI	CCWWGG	4 cut(s)	477, 878, 1310, 1678
TaaI	ACNGT	4 cut(s)	319, 984, 1279, 1957
TaiI	ACGT	3 cut(s)	491, 1621, 1738
TaqI	TCGA	6 cut(s)	231, 323, 333, 387, 927, 1090
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	6 cut(s)	326, 596, 763, 934, 1819, 1877
TatI	WGTACW	8 cut(s)	306, 588, 1065, 1120, 1173, 1284, 1380, 1487
TfiI	GAWTC	6 cut(s)	4, 13, 736, 1087, 1435, 1475
Tru1I	TTAA	4 cut(s)	113, 1020, 1254, 1349
Tru9I	TTAA	4 cut(s)	113, 1020, 1254, 1349
TscAI	CASTG	3 cut(s)	1282, 1341, 1960
TseFI	GTSAC	3 cut(s)	61, 824, 1783
TseI	GCWGC	8 cut(s)	119, 398, 608, 1079, 1187, 1427, 1559, 1769
Tsp45I	GTSAC	3 cut(s)	61, 824, 1783
TspDTI	ATGAA	3 cut(s)	17, 401, 1226
TspGWI	ACGGA	3 cut(s)	328, 415, 1958
TspMI	CCCGGG	1 cut(s)	235
TspRI	CASTG	3 cut(s)	1282, 1341, 1960
Tth111I	GACNNNGTC	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	1253
VpaK11BI	GGWCC	3 cut(s)	423, 1647, 1840
XapI	RAATTY	1 cut(s)	763
XceI	RCATGY	6 cut(s)	1170, 1465, 1559, 1643, 1690, 1991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1333
XmaI	CCCGGG	1 cut(s)	235
XmaJI	CCTAGG	2 cut(s)	878, 1678
XmiI	GTMKAC	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	9 cut(s)	879, 912, 965, 1292, 1644, 1679, 1754, 1790, 2062
ZrmI	AGTACT	4 cut(s)	308, 1067, 1122, 1175
Zsp2I	ATGCAT	2 cut(s)	1582, 1692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.