Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039820.1

Orthogroup ID

OG0015730

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 524

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039820.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

atgtcttcctcctccaaatcgtcagaaccccaagttgaaaaaaccgatcaaaccaatttgaaactccacttcctctatgacatcaagaaacgcaagattgttatggcggaggccagagccaacttggtcgatatcttatttggctttttgggttttccaattagttctctctctaagttagaggtaggtgcaatgcctcaaatttgtaaaagcttagctagtctcgaaggtgatataattcaacctggattcaataacagtgagttttttgaattgaaaccaacacgtgagggatggcacaacagagtcctcactttgttgaacgggattcctgctggagatgatttcaaggacatcccattgtttctatgtcggaactgtacttttgagattgggcttattccttactacgtcacaacggatccggcaacgctttgcgggaattgcagaaaccctatggacaaggaggttccctatgatcatgctaatagggatgatggagggattgttgcaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

172

Amino Acids

19.2

Weight (kDa)

5.62

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0364541
rosa_laevigata	RLG00000027414 RLG00000027415 RLG00000027475
rosa_multiflora	Rmu_sc0039820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292240
rosa_rugosa	Rorug01G0316200 Rorug06G0091000
rosa_samantha	Rh1AG325000 Rh1AG331500 Rh1AG331600 Rh1BG293000 Rh1CG309500 Rh1DG324500
rosa_wichuraiana	Rw0G001540 Rw1G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 438
AclWI	GGATC	2 cut(s)	416, 429
AcsI	RAATTY	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	8 cut(s)	38, 61, 242, 253, 272, 277, 322, 349
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	213, 218
AluI	AGCT	2 cut(s)	213, 218
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	416, 429
AoxI	GGCC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	421
BbrPI	CACGTG	1 cut(s)	287
BccI	CCATC	2 cut(s)	288, 491
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	423, 471
BmrFI	CCNGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	287
BsaXI	ACNNNNNCTCC	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	3 cut(s)	299, 354, 499
BseMI	GCAATG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	46, 421, 478
Bsp1720I	GCTNAGC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	107, 438
BspANI	GGCC	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	423, 471
BspPI	GGATC	2 cut(s)	416, 429
BsrDI	GCAATG	1 cut(s)	198
BssMI	GATC	3 cut(s)	46, 421, 478
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	260, 380
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	174, 214
BstF5I	GGATG	3 cut(s)	299, 354, 499
BstKTI	GATC	3 cut(s)	49, 424, 481
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	46, 421, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	299, 354, 499
BtsIMutI	CAGTG	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	1 cut(s)	482
CviJI	RGCY	6 cut(s)	113, 119, 144, 213, 218, 397
CviKI_1	RGCY	6 cut(s)	113, 119, 144, 213, 218, 397
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	174, 214
DpnI	GATC	3 cut(s)	48, 423, 480
DpnII	GATC	3 cut(s)	46, 421, 478
EciI	GGCGGA	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	133
FaeI	CATG	1 cut(s)	485
FaiI	YATR	7 cut(s)	78, 104, 236, 370, 458, 477, 483
FatI	CATG	1 cut(s)	481
FauI	CCCGC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	478
FokI	GGATG	3 cut(s)	306, 341, 506
FspBI	CTAG	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	3 cut(s)	249, 306, 328
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	25, 375
Hpy188III	TCNNGA	2 cut(s)	85, 224
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	260, 380
HpyCH4IV	ACGT	2 cut(s)	286, 411
HpyCH4V	TGCA	3 cut(s)	191, 447, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	2 cut(s)	174, 214
HpySE526I	ACGT	2 cut(s)	286, 411
Hsp92II	CATG	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	46, 421, 478
LpnPI	CCDG	6 cut(s)	127, 231, 258, 321, 345, 438
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	286, 411
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	48, 423, 480
MboI	GATC	3 cut(s)	46, 421, 478
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	6 cut(s)	55, 159, 201, 237, 272, 442
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	353
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	3 cut(s)	46, 421, 478
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	2 cut(s)	423, 471
NmuCI	GTSAC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	249, 328
PleI	GAGTC	1 cut(s)	314
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	423, 471
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
Sau3AI	GATC	3 cut(s)	46, 421, 478
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	9 cut(s)	186, 190, 215, 220, 232, 247, 289, 414, 471
Sse9I	AATT	6 cut(s)	55, 159, 201, 237, 272, 442
SsiI	CCGC	2 cut(s)	107, 438
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	260, 380
TaiI	ACGT	2 cut(s)	289, 414
TaqI	TCGA	2 cut(s)	129, 225
TasI	AATT	6 cut(s)	55, 159, 201, 237, 272, 442
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	249, 328
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.