Rorug06G0091000

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010913
Physical Location & Seq
Reverse (-)
12126581 .. 12128723
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0091000.1

Sequence Viewer

Length: 825 bp
ATGGAGGCCTTATCAGCCAGGTTTCGTTTCCTGGCCGTACATTGCCTTGCTCTTTTGGGGCCGTTTTATTTCAACTGGTCTGCGTTTTGGTTGGCTGTGGCCCTCCATTTTGTTACAGGTCTGGGTATGACTCTGTCTTACCATAGAAACCTCGCTCACCGCAGCTTCAAGCTTCCTAAATGGCTCGAGTACCCTTTAGCTTATTGCGGCGTCCTTTCACACCAGGGAAGTCCAATTCAATGGGTGAGCATACACAGAGTCCATCATCAGAATGCCGACACATCGGATGACCCTCACAGTCCCATTAAGGGATTTTGGTACAGTCATTTTGATTGGGTCGATCATCTGTTTGGAAGCCCCAACGCAGTAGAATTCAAAAATGTTGGAGACTTAAAGGAGCAGTGGTACTATAGATTTCTTCACTTTACGTATCCTTATCACTCTGTTGCTCTGGGAATTCTGCTATATGCTGGAGGAGGGCTACCGTACTTGGTTTGGGGAATGGGTGTGAGAACTGTTTGTGTGCTTCACATTACTTTTGCAGTAAACTCGATCGGCCACATGTGGGGAAAGCAAGTATGGAATACTGGTGATTTGTCTAGAAACAACTGGTTGTTAGGGTTGCTAGCAAATGGCGAAGGTTGGCACAATAATCATCATGCCTTTGAGTACTCAGCTCGACAAGGCTTGGAATGGTGGGAGATTGACACTACTTGGTATATAATATGCTTCCTTGAAGCCATTGGTTTGGCTACAGACGTAAAACTCCCAACTGAAGCTCATAAGAAACAAAAGGCTCTATGCAAGAAAAGCACTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP20

Protein Analysis

274

Amino Acids

31.59

Weight (kDa)

8.52

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 25 - 239 7e-16 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76770
fragaria_vesca FvH4_2g13660 FvH4_2g13660
malus_domestica MD05G1026800.v1.1 MD10G1026100.v1.1
prunus_persica Prupe.8G031300_v2.0.a1
pyrus_communis pycom05g01860 pycom10g01750
rosa_chinensis RchiOBHm_Chr6g0275301
rosa_laevigata RLG00000013474
rosa_multiflora Rmu_sc0010674.1_g000001 Rmu_sc0011469.1_g000003 Rmu_sc0015244.1_g000002
rosa_roxburghii Rroxscaffold_7G00193420
rosa_rugosa Rorug06G0091000
rosa_samantha Rh6AG204600 Rh6BG207500 Rh6CG210000 Rh6DG200400
rosa_wichuraiana Rw6G017760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 207
AcoI YGGCCR 2 cut(s) 33, 556
AcsI RAATTY 2 cut(s) 371, 456
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 6 cut(s) 39, 191, 320, 407, 488, 671
AfiI CCNNNNNNNGG 2 cut(s) 308, 565
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 5 cut(s) 73, 169, 239, 376, 737
AjnI CCWGG 3 cut(s) 17, 30, 222
AluBI AGCT 5 cut(s) 165, 172, 200, 677, 779
AluI AGCT 5 cut(s) 165, 172, 200, 677, 779
Alw26I GTCTC 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 5 cut(s) 6, 33, 59, 99, 556
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 371, 456
AspS9I GGNCC 2 cut(s) 59, 100
AsuHPI GGTGA 3 cut(s) 149, 256, 602
AsuNHI GCTAGC 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 270
BceAI ACGGC 2 cut(s) 20, 46
BcgI CGANNNNNNTGC 2 cut(s) 531, 565
BciT130I CCWGG 3 cut(s) 19, 32, 224
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 2 cut(s) 600, 626
BfmI CTRYAG 2 cut(s) 409, 753
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 2 cut(s) 163, 208
BlsI GCNGC 2 cut(s) 164, 209
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 3 cut(s) 19, 32, 224
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 59, 100
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 19, 32, 224
BmtI GCTAGC 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 565
Bse1I ACTGG 3 cut(s) 80, 592, 614
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 3 cut(s) 19, 32, 224
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 308, 565
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 3 cut(s) 80, 592, 614
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 555
BshFI GGCC 5 cut(s) 8, 35, 61, 101, 558
BsiEI CGRYCG 1 cut(s) 555
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 308, 565
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 5 cut(s) 8, 35, 61, 101, 558
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 2 cut(s) 340, 552
BspACI CCGC 2 cut(s) 160, 207
BspANI GGCC 5 cut(s) 8, 35, 61, 101, 558
BspCNI CTCAG 1 cut(s) 686
BspLI GGNNCC 1 cut(s) 60
BspOI GCTAGC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 3 cut(s) 80, 592, 614
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 340, 552
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 19, 32, 224
Bst4CI ACNGT 4 cut(s) 299, 323, 486, 517
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 1 cut(s) 673
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 2 cut(s) 343, 555
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 340, 552
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 2 cut(s) 14, 810
BstNI CCWGG 3 cut(s) 19, 32, 224
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 3 cut(s) 17, 30, 222
BstSFI CTRYAG 2 cut(s) 409, 753
BstSNI TACGTA 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 174
BstXI CCANNNNNNTGG 2 cut(s) 240, 748
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 5 cut(s) 8, 35, 61, 101, 558
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 59, 100
CseI GACGC 1 cut(s) 199
Csp6I GTAC 6 cut(s) 38, 190, 319, 406, 487, 670
CviAII CATG 2 cut(s) 562, 659
CviQI GTAC 6 cut(s) 38, 190, 319, 406, 487, 670
DdeI CTNAG 1 cut(s) 673
DpnI GATC 2 cut(s) 342, 554
DpnII GATC 2 cut(s) 340, 552
EaeI YGGCCR 2 cut(s) 33, 556
Eco105I TACGTA 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 185
EcoRI GAATTC 2 cut(s) 371, 456
EcoRII CCWGG 3 cut(s) 17, 30, 222
FaeI CATG 2 cut(s) 565, 662
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 561, 658
Fnu4HI GCNGC 2 cut(s) 163, 208
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 163, 208
FspBI CTAG 2 cut(s) 600, 626
GluI GCNGC 2 cut(s) 163, 208
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 5 cut(s) 8, 35, 61, 101, 558
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 565, 662
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 130, 258
HphI GGTGA 3 cut(s) 149, 256, 602
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 2 cut(s) 270, 286
Hpy188III TCNNGA 1 cut(s) 600
Hpy8I GTNNAC 1 cut(s) 547
HpyAV CCTTC 1 cut(s) 632
HpyCH4III ACNGT 4 cut(s) 299, 323, 486, 517
HpyCH4IV ACGT 2 cut(s) 428, 759
HpyCH4V TGCA 2 cut(s) 542, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 810
HpyF3I CTNAG 1 cut(s) 673
HpySE526I ACGT 2 cut(s) 428, 759
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 565, 662
Kzo9I GATC 2 cut(s) 340, 552
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 1 cut(s) 174
MaeI CTAG 2 cut(s) 600, 626
MaeII ACGT 2 cut(s) 428, 759
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 342, 554
MboI GATC 2 cut(s) 340, 552
MboII GAAGA 1 cut(s) 410
MluCI AATT 3 cut(s) 234, 371, 456
MlyI GAGTC 2 cut(s) 124, 267
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 5 cut(s) 113, 161, 303, 467, 470
MseI TTAA 2 cut(s) 306, 392
MslI CAYNNNNRTG 1 cut(s) 270
MspR9I CCNGG 3 cut(s) 19, 32, 224
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 3 cut(s) 19, 32, 224
MwoI GCNNNNNNNGC 2 cut(s) 14, 810
NdeII GATC 2 cut(s) 340, 552
NheI GCTAGC 1 cut(s) 625
NlaIII CATG 2 cut(s) 565, 662
NlaIV GGNNCC 1 cut(s) 60
NspI RCATGY 1 cut(s) 565
PaeR7I CTCGAG 1 cut(s) 185
PceI AGGCCT 1 cut(s) 8
PciI ACATGT 1 cut(s) 561
PctI GAATGC 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 164, 209
Ple19I CGATCG 1 cut(s) 555
PleI GAGTC 2 cut(s) 124, 266
PpsI GAGTC 2 cut(s) 124, 266
Ppu21I YACGTR 1 cut(s) 429
PscI ACATGT 1 cut(s) 561
Psp6I CCWGG 3 cut(s) 17, 30, 222
PspGI CCWGG 3 cut(s) 17, 30, 222
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 59, 100
PspXI VCTCGAGB 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 133
PvuI CGATCG 1 cut(s) 555
RsaI GTAC 6 cut(s) 39, 191, 320, 407, 488, 671
RsaNI GTAC 6 cut(s) 38, 190, 319, 406, 487, 670
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 306, 392
SatI GCNGC 2 cut(s) 163, 208
Sau3AI GATC 2 cut(s) 340, 552
Sau96I GGNCC 2 cut(s) 59, 100
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 2 cut(s) 124, 267
ScrFI CCNGG 3 cut(s) 19, 32, 224
SfcI CTRYAG 2 cut(s) 409, 753
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SnaBI TACGTA 1 cut(s) 429
Sse9I AATT 3 cut(s) 234, 371, 456
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 2 cut(s) 160, 207
SspMI CTAG 2 cut(s) 600, 626
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 17, 30, 222
TaaI ACNGT 4 cut(s) 299, 323, 486, 517
TaiI ACGT 2 cut(s) 431, 762
TaqI TCGA 4 cut(s) 186, 339, 551, 679
TasI AATT 3 cut(s) 234, 371, 456
TatI WGTACW 1 cut(s) 669
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 306, 392
Tru9I TTAA 2 cut(s) 306, 392
TscAI CASTG 1 cut(s) 407
TseI GCWGC 1 cut(s) 162
TspRI CASTG 1 cut(s) 407
Tth111I GACNNNGTC 1 cut(s) 133
XapI RAATTY 2 cut(s) 371, 456
XbaI TCTAGA 1 cut(s) 599
XceI RCATGY 1 cut(s) 565
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 2 cut(s) 600, 626
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.