Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010913

Physical Location & Seq

Genomic Coordinates Reverse (-)

34919140 .. 34920438

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATCTTGAATTAGGACTCAAGATAACCAAAAATGCAGATGATCATACTTCCTCTTCTGATTTTCGGATTGCGAAGGAGAAATCTGGTCCTGTTTTCATATCCACCGAAACAGAAAGCGCGTACATCCTCACCGCCCATCTTAAAGGTTATAGAAAAGAGCATGTTGATATTGACATAAATGAAGACGAGACTCAGCTAGGCATTGCTGTGGAGAAGCCAGTTCAAGAGAAGGTGATGTCAGGATGGTCAATGAACAAGAAAGAAGGGGAGACAAGGGGATTCAGAAAAGTCTTTCGGATCCCAGATGGAGTGGTTTTGAGTCGAATCAAGGCCAAGATTAATGAACAAGACTCGACTCTCAGAATCTTCATGCCAAAAGCGGTGAAAGGATTTGTTGGTGCTGGGGTTGAGGAACTGAAAGAAGAAGAGGTGATCATAGGGAAACCACAAATCAGTGAGAAAATGAAAATGGATAAGAACTCTCAGGCTAAAGAAAAAGAGGTAGATAAAGAAGAGTACACGAAAGAAGTTGTATTACATGGTCAAGATTTGCAGACCAGTGATCGAAGAGAAACTGACGGTGGAGGGATGACGTCAGAAGAAAGTGAAGAACGAAAGATTGCAAAGACTGAAAAAGCTGATAGAATTGAGAAAGAGAGAGAGGATGCTAAAAAAAGAATCAAGGAAAAAACGCATGGAGGAGTCAAGAATGATAAAAGCACTGAAGCAACTTATCAAGTTGCTAAACCATCACAAGAAATTGAAGAAATCGATCCAGAATCGAGACCCCCCAAAGCGAACGAAATGCCAAAAGCAACGCCAGCGAAGAAGGAAGTACTTGACAAGGGTGAATCTTCTGAAATGCGGAAAGGAAAAGATGTGTGTGAGAAATCAACTCCAGAGAAGAAGCCTGCTGCGTCAGAAAAGTCCAAGTTACTGTCCACTCCTTTGATCATTGCAGGTTCAGCCCTTCTCGTCACTATTGTACTGCTAGCAATTCACAAGATTAGGAAAAGAAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

342

Amino Acids

38.37

Weight (kDa)

8.25

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76770
fragaria_vesca	FvH4_2g13660 FvH4_2g13660
malus_domestica	MD05G1026800.v1.1 MD10G1026100.v1.1
prunus_persica	Prupe.8G031300_v2.0.a1
pyrus_communis	pycom05g01860 pycom10g01750
rosa_chinensis	RchiOBHm_Chr6g0275301
rosa_laevigata	RLG00000013474
rosa_multiflora	Rmu_sc0010674.1_g000001 Rmu_sc0011469.1_g000003 Rmu_sc0015244.1_g000002
rosa_roxburghii	Rroxscaffold_7G00193420
rosa_rugosa	Rorug06G0091000
rosa_samantha	Rh6AG204600 Rh6BG207500 Rh6CG210000 Rh6DG200400
rosa_wichuraiana	Rw6G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	953
AccII	CGCG	1 cut(s)	122
AciI	CCGC	3 cut(s)	135, 383, 868
AclWI	GGATC	4 cut(s)	12, 295, 308, 770
AcuI	CTGAAG	1 cut(s)	747
AcyI	GRCGYC	1 cut(s)	596
AfaI	GTAC	4 cut(s)	125, 521, 840, 990
AgsI	TTSAA	3 cut(s)	11, 227, 767
AluBI	AGCT	2 cut(s)	199, 641
AluI	AGCT	2 cut(s)	199, 641
Alw26I	GTCTC	3 cut(s)	185, 266, 781
AlwI	GGATC	4 cut(s)	12, 295, 308, 770
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	917
AseI	ATTAAT	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	5 cut(s)	124, 247, 397, 445, 863
AsuNHI	GCTAGC	1 cut(s)	994
AvaII	GGWCC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	904
BccI	CCATC	4 cut(s)	147, 240, 302, 760
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BclI	TGATCA	3 cut(s)	43, 435, 954
BcoDI	GTCTC	3 cut(s)	185, 266, 781
BfaI	CTAG	2 cut(s)	200, 995
BfuAI	ACCTGC	1 cut(s)	953
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
BmcAI	AGTACT	1 cut(s)	840
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	302
BmsI	GCATC	1 cut(s)	658
BmtI	GCTAGC	1 cut(s)	998
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	5
Bsa29I	ATCGAT	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	781
Bse1I	ACTGG	2 cut(s)	221, 561
Bse3DI	GCAATG	2 cut(s)	204, 957
BseCI	ATCGAT	1 cut(s)	774
BseGI	GGATG	4 cut(s)	126, 251, 597, 673
BseMI	GCAATG	2 cut(s)	204, 957
BseMII	CTCAG	3 cut(s)	209, 376, 500
BseNI	ACTGG	2 cut(s)	221, 561
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	1 cut(s)	904
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	774
BsmAI	GTCTC	3 cut(s)	185, 266, 781
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	781
Bsp143I	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
BspACI	CCGC	3 cut(s)	135, 383, 868
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	3 cut(s)	208, 375, 499
BspDI	ATCGAT	1 cut(s)	774
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	953
BspOI	GCTAGC	1 cut(s)	998
BspPI	GGATC	4 cut(s)	12, 295, 308, 770
BspTNI	GGTCTC	1 cut(s)	781
BsrDI	GCAATG	2 cut(s)	204, 957
BsrI	ACTGG	2 cut(s)	221, 561
BssMI	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
BssNI	GRCGYC	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	584, 942
Bst6I	CTCTTC	4 cut(s)	61, 423, 510, 565
BstACI	GRCGYC	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	825, 915, 996
BstDEI	CTNAG	3 cut(s)	195, 362, 486
BstF5I	GGATG	4 cut(s)	126, 251, 597, 673
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	7 cut(s)	7, 46, 303, 438, 568, 778, 957
BstMAI	GTCTC	3 cut(s)	185, 266, 781
BstMBI	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	824, 968
BstNSI	RCATGY	1 cut(s)	167
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	4, 300
BstYI	RGATCY	2 cut(s)	4, 300
Bsu15I	ATCGAT	1 cut(s)	774
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	126, 251, 597, 673
BtsIMutI	CAGTG	3 cut(s)	463, 568, 723
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	3 cut(s)	825, 915, 996
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	774
CseI	GACGC	1 cut(s)	909
Csp6I	GTAC	4 cut(s)	124, 520, 839, 989
CviAII	CATG	4 cut(s)	164, 373, 542, 698
CviJI	RGCY	7 cut(s)	199, 220, 335, 491, 641, 913, 971
CviKI_1	RGCY	7 cut(s)	199, 220, 335, 491, 641, 913, 971
CviQI	GTAC	4 cut(s)	124, 520, 839, 989
DdeI	CTNAG	3 cut(s)	195, 362, 486
DpnI	GATC	7 cut(s)	6, 45, 302, 437, 567, 777, 956
DpnII	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
Eam1104I	CTCTTC	4 cut(s)	61, 423, 510, 565
EarI	CTCTTC	4 cut(s)	61, 423, 510, 565
Eco31I	GGTCTC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	747
FaeI	CATG	4 cut(s)	167, 376, 545, 701
FaiI	YATR	9 cut(s)	48, 101, 153, 165, 179, 374, 440, 543, 699
FatI	CATG	4 cut(s)	163, 372, 541, 697
FbaI	TGATCA	3 cut(s)	43, 435, 954
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	4 cut(s)	113, 258, 604, 680
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	2 cut(s)	200, 995
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	918
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	1 cut(s)	335
HgaI	GACGC	1 cut(s)	909
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	167, 376, 545, 701
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HphI	GGTGA	5 cut(s)	124, 247, 397, 445, 863
Hpy166II	GTNNAC	2 cut(s)	522, 945
Hpy188I	TCNGA	8 cut(s)	61, 69, 287, 300, 365, 601, 862, 925
Hpy188III	TCNNGA	9 cut(s)	8, 22, 227, 243, 548, 709, 779, 786, 902
Hpy8I	GTNNAC	2 cut(s)	522, 945
HpyAV	CCTTC	5 cut(s)	70, 226, 260, 826, 983
HpyCH4III	ACNGT	2 cut(s)	584, 942
HpyCH4IV	ACGT	1 cut(s)	596
HpyCH4V	TGCA	4 cut(s)	38, 556, 626, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	824, 968
HpyF3I	CTNAG	3 cut(s)	195, 362, 486
HpySE526I	ACGT	1 cut(s)	596
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	4 cut(s)	167, 376, 545, 701
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	3 cut(s)	43, 435, 954
Kzo9I	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
Lsp1109I	GCAGC	1 cut(s)	904
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	200, 995
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	2 cut(s)	936, 979
MalI	GATC	7 cut(s)	6, 45, 302, 437, 567, 777, 956
MboI	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
MflI	RGATCY	2 cut(s)	4, 300
MluCI	AATT	4 cut(s)	11, 648, 762, 999
MlyI	GAGTC	6 cut(s)	12, 187, 331, 347, 352, 714
MnlI	CCTC	8 cut(s)	64, 140, 406, 424, 496, 581, 658, 695
MseI	TTAA	2 cut(s)	144, 342
MslI	CAYNNNNRTG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	824, 968
NdeII	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
NheI	GCTAGC	1 cut(s)	994
NlaIII	CATG	4 cut(s)	167, 376, 545, 701
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	979
NspI	RCATGY	1 cut(s)	167
PfeI	GAWTC	6 cut(s)	282, 327, 366, 681, 782, 854
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	6 cut(s)	12, 187, 330, 347, 352, 713
PpsI	GAGTC	6 cut(s)	12, 187, 330, 347, 352, 713
PshBI	ATTAAT	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	4, 300
RsaI	GTAC	4 cut(s)	125, 521, 840, 990
RsaNI	GTAC	4 cut(s)	124, 520, 839, 989
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	144, 342
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	7 cut(s)	4, 43, 300, 435, 565, 775, 954
Sau96I	GGNCC	1 cut(s)	89
ScaI	AGTACT	1 cut(s)	840
SchI	GAGTC	6 cut(s)	12, 187, 331, 347, 352, 714
SetI	ASST	8 cut(s)	151, 201, 237, 435, 507, 599, 643, 967
SfaNI	GCATC	1 cut(s)	658
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	4 cut(s)	11, 648, 762, 999
SsiI	CCGC	3 cut(s)	135, 383, 868
SspMI	CTAG	2 cut(s)	200, 995
TaaI	ACNGT	2 cut(s)	584, 942
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	5 cut(s)	325, 356, 568, 774, 785
TasI	AATT	4 cut(s)	11, 648, 762, 999
TatI	WGTACW	3 cut(s)	519, 838, 988
TfiI	GAWTC	6 cut(s)	282, 327, 366, 681, 782, 854
Tru1I	TTAA	2 cut(s)	144, 342
Tru9I	TTAA	2 cut(s)	144, 342
TscAI	CASTG	3 cut(s)	463, 568, 730
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	6 cut(s)	88, 198, 269, 360, 361, 482
TspRI	CASTG	3 cut(s)	463, 568, 730
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	342
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	2 cut(s)	200, 995
ZraI	GACGTC	1 cut(s)	597
ZrmI	AGTACT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.