FvH4_2g13660

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
11935143 .. 11936734
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13660.t2

Sequence Viewer

Length: 1056 bp
ATGGACCTTGAATTAGGACTCAAGATCAGCCATACTACGGATGATCTTACTTCCTCTTCTGATTTTCGGATTGCGAAGAACAAATCTGCCCCTGTTTTCATATCCAATGAAACGGAAACCTCGTTCATCCTCACTGCCCACCTTAAAGGTTATAAAAAAGAGCATGTTGATATTGACATTAATGAAGAAGGAACTCAGCTAGGCATTACTGTTGAGAAACCAGTTCATGAGAAGGTGATGTCAGGATGGTCAATGAAAAGCAAAGAAGGGGAGACAAGGGGATTTAGAAAAGTCTTTCGGATCCCAGATGGAGTGGTTTTGAGTCGAATCAAGGCCAAGTTTAATGATCAAGACTCAACTCTCAAAATCTTCATGCCAAAAGTGGTGAAAGGAGTCGTTGGCGTTGGGGTTAAGGAACTGCAAGAAGAAGGGGTGATCATAGGGAGACCACAGATGACAGAAGCTGCGACTGATGAGGTTCCTGAAACTGAGAAAATGAGAATGAAAAAGAACTCTCAGGCTAAGGGAAAAGAGGTAGAAAAAGAAACCTACACGAAAGAAATTGTATTGGATGATCAAGAGTTGCAGACCAAGGATCCAAGAGAAACTAAAGGTGGAGGGATGGAATCAGAAGAAAGTAAAGAACAAAAGATTGCAGAGAATAAAGAAGCTGATAGGATTGAGAGAGAGGATGCTGAACGAAGAAGCAAGGAAGAAACACATGGAGGTGTCAAGAATGATAAAAGCACTGAAGCAACTCATAGAGTTGCTAAACCTTCACAAGAAATTGAAGAAACTGAAACTCGCATCGAAGAACCTGCTAACTCAAACGAAATGCCAGAAGCAATGCCAGAGAAGAAGAAATTACTTGACAAGTGTGAATGTTCTGAAATGGGGAAAGGAAAGGATGTGGGTGAGAAATCAACTGCAGAGAAGAAGCTTGCTGCATCAGAAAAGTCCAAGTTGCTCTCCACTCCTTTGATCATTGCAGGTTCAGCCCTTCTCGTCTCTATTGTACTGCTAGCAATTTACAGGATTAGGAATAGAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

39.29

Weight (kDa)

6.05

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc36I ACCTGC 2 cut(s) 826, 980
AclWI GGATC 4 cut(s) 295, 308, 590, 603
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 1 cut(s) 1017
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 11, 791
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 4 cut(s) 199, 464, 671, 940
AluI AGCT 4 cut(s) 199, 464, 671, 940
Alw26I GTCTC 3 cut(s) 266, 439, 1012
AlwI GGATC 4 cut(s) 295, 308, 590, 603
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 464, 944
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 4 cut(s) 247, 397, 445, 926
AsuNHI GCTAGC 1 cut(s) 1021
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 2 cut(s) 300, 595
BbvI GCAGC 2 cut(s) 451, 931
BccI CCATC 3 cut(s) 240, 302, 616
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BclI TGATCA 4 cut(s) 346, 435, 574, 981
BcoDI GTCTC 3 cut(s) 266, 439, 1012
BfaI CTAG 2 cut(s) 200, 1022
BfmI CTRYAG 1 cut(s) 927
BfuAI ACCTGC 2 cut(s) 826, 980
BisI GCNGC 2 cut(s) 465, 945
BlsI GCNGC 2 cut(s) 466, 946
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 302, 480, 597
BmsI GCATC 3 cut(s) 682, 816, 956
BmtI GCTAGC 1 cut(s) 1025
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 2 cut(s) 852, 984
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 7 cut(s) 46, 126, 251, 577, 627, 697, 913
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 2 cut(s) 852, 984
BseMII CTCAG 3 cut(s) 209, 480, 530
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 451, 931
BshFI GGCC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 3 cut(s) 266, 439, 1012
BsmBI CGTCTC 1 cut(s) 1012
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 439
Bsp143I GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 3 cut(s) 208, 481, 529
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 302, 480, 597
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 2 cut(s) 826, 980
BspOI GCTAGC 1 cut(s) 1025
BspPI GGATC 4 cut(s) 295, 308, 590, 603
BspTNI GGTCTC 1 cut(s) 439
BsrDI GCAATG 2 cut(s) 852, 984
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
BssT1I CCWWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 942, 1023
BstDEI CTNAG 4 cut(s) 195, 489, 516, 522
BstF5I GGATG 7 cut(s) 46, 126, 251, 577, 627, 697, 913
BstKTI GATC 8 cut(s) 27, 46, 303, 349, 438, 577, 598, 984
BstMAI GTCTC 3 cut(s) 266, 439, 1012
BstMBI GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
BstMWI GCNNNNNNNGC 1 cut(s) 995
BstNSI RCATGY 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 927
BstV1I GCAGC 2 cut(s) 451, 931
BstX2I RGATCY 2 cut(s) 300, 595
BstYI RGATCY 2 cut(s) 300, 595
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 7 cut(s) 46, 126, 251, 577, 627, 697, 913
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 747
BveI ACCTGC 2 cut(s) 826, 980
Cac8I GCNNGC 2 cut(s) 942, 1023
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 1016
CviAII CATG 4 cut(s) 164, 227, 373, 722
CviJI RGCY 8 cut(s) 30, 199, 335, 464, 521, 671, 940, 998
CviKI_1 RGCY 8 cut(s) 30, 199, 335, 464, 521, 671, 940, 998
CviQI GTAC 1 cut(s) 1016
DdeI CTNAG 4 cut(s) 195, 489, 516, 522
DpnI GATC 8 cut(s) 26, 45, 302, 348, 437, 576, 597, 983
DpnII GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 771
EcoT14I CCWWGG 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 591
Esp3I CGTCTC 1 cut(s) 1012
FaeI CATG 4 cut(s) 167, 230, 376, 725
FaiI YATR 9 cut(s) 33, 101, 153, 165, 228, 374, 440, 723, 762
FatI CATG 4 cut(s) 163, 226, 372, 721
FbaI TGATCA 4 cut(s) 346, 435, 574, 981
Fnu4HI GCNGC 2 cut(s) 465, 945
FokI GGATG 7 cut(s) 53, 113, 258, 584, 634, 704, 920
Fsp4HI GCNGC 2 cut(s) 465, 945
FspBI CTAG 2 cut(s) 200, 1022
GluI GCNGC 2 cut(s) 465, 945
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 4 cut(s) 167, 230, 376, 725
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 6 cut(s) 18, 322, 327, 353, 393, 626
HphI GGTGA 4 cut(s) 247, 397, 445, 926
Hpy188I TCNGA 6 cut(s) 61, 69, 300, 631, 889, 952
Hpy188III TCNNGA 7 cut(s) 22, 227, 243, 350, 482, 578, 733
HpyAV CCTTC 6 cut(s) 182, 226, 260, 422, 786, 1010
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 6 cut(s) 421, 586, 656, 929, 947, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 995
HpyF3I CTNAG 4 cut(s) 195, 489, 516, 522
Hsp92II CATG 4 cut(s) 167, 230, 376, 725
Ksp22I TGATCA 4 cut(s) 346, 435, 574, 981
Kzo9I GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
Lsp1109I GCAGC 2 cut(s) 451, 931
LweI GCATC 3 cut(s) 682, 816, 956
MaeI CTAG 2 cut(s) 200, 1022
MalI GATC 8 cut(s) 26, 45, 302, 348, 437, 576, 597, 983
MboI GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
MflI RGATCY 2 cut(s) 300, 595
MluCI AATT 5 cut(s) 11, 561, 786, 863, 1026
MlyI GAGTC 4 cut(s) 12, 331, 347, 402
MnlI CCTC 8 cut(s) 64, 130, 140, 469, 526, 611, 682, 719
MseI TTAA 4 cut(s) 144, 180, 342, 411
MslI CAYNNNNRTG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 995
NdeII GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
NheI GCTAGC 1 cut(s) 1021
NlaIII CATG 4 cut(s) 167, 230, 376, 725
NlaIV GGNNCC 3 cut(s) 302, 480, 597
NspI RCATGY 1 cut(s) 167
PagI TCATGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 2 cut(s) 327, 626
PkrI GCNGC 2 cut(s) 466, 946
PleI GAGTC 4 cut(s) 12, 330, 347, 401
PpsI GAGTC 4 cut(s) 12, 330, 347, 401
PshBI ATTAAT 1 cut(s) 180
PsiI TTATAA 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 302, 480, 597
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 2 cut(s) 300, 595
RsaI GTAC 1 cut(s) 1017
RsaNI GTAC 1 cut(s) 1016
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 4 cut(s) 144, 180, 342, 411
SatI GCNGC 2 cut(s) 465, 945
Sau3AI GATC 8 cut(s) 24, 43, 300, 346, 435, 574, 595, 981
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 4 cut(s) 12, 331, 347, 402
SfaNI GCATC 3 cut(s) 682, 816, 956
SfcI CTRYAG 1 cut(s) 927
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 5 cut(s) 11, 561, 786, 863, 1026
SspMI CTAG 2 cut(s) 200, 1022
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 325, 810
TasI AATT 5 cut(s) 11, 561, 786, 863, 1026
TatI WGTACW 1 cut(s) 1015
TfiI GAWTC 2 cut(s) 327, 626
Tru1I TTAA 4 cut(s) 144, 180, 342, 411
Tru9I TTAA 4 cut(s) 144, 180, 342, 411
TscAI CASTG 2 cut(s) 139, 754
TseI GCWGC 2 cut(s) 464, 944
TspDTI ATGAA 8 cut(s) 88, 115, 123, 198, 215, 269, 361, 518
TspGWI ACGGA 2 cut(s) 53, 128
TspRI CASTG 2 cut(s) 139, 754
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 180
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 200, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.