Rh1AG331500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015730
Physical Location & Seq
Reverse (-)
56690242 .. 56698123
7882 bp
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UTR
Exon/CDS
Intron
Rh1AG331500.1

Sequence Viewer

Length: 291 bp
ATGGACAAGGAGGTTTCCTATGATCATGCTAATAGGGATGATGGAGGGATTGTTGCAAGAGGTCGCTTAAGATTCCTCATTTTTGATGACATGAAGATGAAGCCCGCGGGTGATTATCTTGATACCTTCGACTTGGTTAAGGGTATGGGATTTAACTGGGGTGACCTGAAGAAAAAGGAATTGACCCTCACCTCGGAAATGACTCGTTCGCTGCTCAAATCTTGTGCGGAGAAAAAGACCGTCCTGACCGAGTTATTTCTGGAAGAGTTGATGAAGGATGAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.0

Weight (kDa)

5.15

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 5 - 91 2.2e-06 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 105, 107, 227
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 122, 173, 181
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 35
BclI TGATCA 1 cut(s) 22
BfrI CTTAAG 1 cut(s) 67
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 105, 192
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 105, 192
BseGI GGATG 2 cut(s) 43, 283
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 193
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 3 cut(s) 105, 107, 227
BspFNI CGCG 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 105, 192
BssMI GATC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 105
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 2 cut(s) 43, 283
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstPI GGTNACC 1 cut(s) 161
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 43, 283
Cac8I GCNNGC 1 cut(s) 105
Cfr42I CCGCGG 1 cut(s) 108
CviAII CATG 3 cut(s) 26, 91, 288
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
FaeI CATG 3 cut(s) 29, 94, 291
FaiI YATR 5 cut(s) 21, 27, 92, 146, 289
FatI CATG 3 cut(s) 25, 90, 287
FauI CCCGC 2 cut(s) 100, 112
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 29, 94, 291
HinfI GANTC 3 cut(s) 72, 202, 281
HphI GGTGA 3 cut(s) 122, 173, 181
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 119, 244, 260
HpyAV CCTTC 2 cut(s) 136, 268
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 56, 287
Hsp92II CATG 3 cut(s) 29, 94, 291
Ksp22I TGATCA 1 cut(s) 22
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 142, 179, 245, 257
Lsp1109I GCAGC 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 106, 181, 275
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 6 cut(s) 4, 38, 53, 86, 197, 202
MseI TTAA 3 cut(s) 68, 138, 153
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 67
MvnI CGCG 1 cut(s) 107
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 29, 94, 291
NmuCI GTSAC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 72, 281
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspEI GGTNACC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 95
SacII CCGCGG 1 cut(s) 108
SaqAI TTAA 3 cut(s) 68, 138, 153
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 22
SchI GAGTC 1 cut(s) 196
SetI ASST 5 cut(s) 15, 64, 128, 168, 194
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 1 cut(s) 179
SsiI CCGC 3 cut(s) 105, 107, 227
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 179
TfiI GAWTC 2 cut(s) 72, 281
Tru1I TTAA 3 cut(s) 68, 138, 153
Tru9I TTAA 3 cut(s) 68, 138, 153
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 107, 113, 287
Vha464I CTTAAG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.