Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000008.1

Orthogroup ID

OG0005329

Physical Location & Seq

Genomic Coordinates Forward (+)

164880 .. 166397

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ctggcacgcgttgtggcagaggtgaccagagatgccgcggcggtgagggaaggtattagtgaggtttggagttgcaatgagagtgggaatgagagtggtggtggattgatggcgaggaggaagaagaggaggagaaggcggaaagggttggagtgttttgatgatgaggagaggaagagggagtttgaagatgagagggtttcatttggggttgtgagatatggttatctgagcccaagagaggaggcagagtgctgtcagagtctcaaggagggagcaaaactagaatctgaaagaacaagagtcacagaagctcaagagcatgagccaacttcaaaacagctggcaaatgtgatgagggtgaagatgagaagtatagataaggttatccataacagaagagagtcacaagaaaggatcatcaagagctatcgaggacttgttgtctctattgccagcagctatcaagggaaaggattaagcttggaggacctcattcaggaagggagcattggacttcttcgaggggcagagaagtttgatcctgagagaggatttaaattatcaacatatgtgtattggtggattagacaagctatcatcagagccatagaaaagaagtctagaataattagattaccagtgagtagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

217

Amino Acids

24.97

Weight (kDa)

9.58

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	141 - 209	6.8e-24	Sigma-70 region 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13730
fragaria_vesca	FvH4_7g01630
malus_domestica	MD02G1302300.v1.1 MD07G1021800.v1.1
prunus_persica	Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1 Prupe.2G021900_v2.0.a1
pyrus_communis	pycom02g25460 pycom07g01650
rosa_chinensis	RchiOBHm_Chr1g0317901
rosa_laevigata	RLG00000029590 RLG00000030578
rosa_multiflora	Rmu_sc0000654.1_g000054 Rmu_ssc0000008.1_g000049
rosa_roxburghii	Rroxscaffold_4G00330140
rosa_rugosa	Rorug01G0018500
rosa_samantha	Rh1AG030000 Rh1BG026000 Rh1BG026100 Rh1CG028600 Rh1DG041500
rosa_wichuraiana	Rw1G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	9, 38
AciI	CCGC	4 cut(s)	36, 38, 41, 139
AclWI	GGATC	2 cut(s)	425, 536
AfiI	CCNNNNNNNGG	3 cut(s)	241, 499, 551
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	188, 336
AhdI	GACNNNNNGTC	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	7 cut(s)	314, 343, 429, 462, 483, 596, 651
AluI	AGCT	7 cut(s)	314, 343, 429, 462, 483, 596, 651
Alw26I	GTCTC	2 cut(s)	269, 451
AlwI	GGATC	2 cut(s)	425, 536
ApeKI	GCWGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	34, 55, 373
AvaII	GGWCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	269, 451
BfaI	CTAG	2 cut(s)	284, 624
BisI	GCNGC	3 cut(s)	36, 39, 460
BlsI	GCNGC	3 cut(s)	37, 40, 461
Bme18I	GGWCC	1 cut(s)	490
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	490
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	2 cut(s)	251, 300
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 499, 551
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	241, 499, 551
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	221, 537
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	5 cut(s)	130, 142, 145, 182, 257
BseXI	GCAGC	1 cut(s)	471
Bsh1236I	CGCG	2 cut(s)	9, 38
BslI	CCNNNNNNNGG	3 cut(s)	241, 499, 551
BsmAI	GTCTC	2 cut(s)	269, 451
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	417, 541
BspACI	CCGC	4 cut(s)	36, 38, 41, 139
BspCNI	CTCAG	2 cut(s)	222, 538
BspFNI	CGCG	2 cut(s)	9, 38
BspPI	GGATC	2 cut(s)	425, 536
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	417, 541
Bst6I	CTCTTC	3 cut(s)	119, 170, 394
BstC8I	GCNNGC	3 cut(s)	7, 345, 457
BstDEI	CTNAG	2 cut(s)	230, 546
BstDSI	CCRYGG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	22
BstENI	CCTNNNNNAGG	2 cut(s)	497, 549
BstFNI	CGCG	2 cut(s)	9, 38
BstKTI	GATC	2 cut(s)	420, 544
BstMAI	GTCTC	2 cut(s)	269, 451
BstMBI	GATC	2 cut(s)	417, 541
BstPI	GGTNACC	1 cut(s)	22
BstUI	CGCG	2 cut(s)	9, 38
BstV1I	GCAGC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	3 cut(s)	7, 345, 457
Cfr13I	GGNCC	1 cut(s)	490
Cfr42I	CCGCGG	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	230, 546
DpnI	GATC	2 cut(s)	419, 543
DpnII	GATC	2 cut(s)	417, 541
DraI	TTTAAA	1 cut(s)	559
DriI	GACNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	3 cut(s)	119, 170, 394
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EarI	CTCTTC	3 cut(s)	119, 170, 394
EciI	GGCGGA	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	490
Eco91I	GGTNACC	1 cut(s)	22
EcoNI	CCTNNNNNAGG	2 cut(s)	497, 549
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	1 cut(s)	326
FaiI	YATR	7 cut(s)	222, 324, 377, 393, 571, 573, 611
FatI	CATG	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	36, 39, 460
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	36, 39, 460
FspBI	CTAG	2 cut(s)	284, 624
GluI	GCNGC	3 cut(s)	36, 39, 460
Hin1II	CATG	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	4 cut(s)	262, 287, 303, 404
HphI	GGTGA	3 cut(s)	34, 55, 373
Hpy188I	TCNGA	4 cut(s)	231, 261, 292, 605
Hpy188III	TCNNGA	5 cut(s)	317, 424, 500, 545, 624
HpyAV	CCTTC	3 cut(s)	44, 129, 497
HpyCH4V	TGCA	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	230, 546
Hsp92II	CATG	1 cut(s)	326
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	417, 541
LmnI	GCTCC	2 cut(s)	275, 507
LpnPI	CCDG	5 cut(s)	40, 329, 469, 485, 558
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	284, 624
MaeIII	GTNAC	3 cut(s)	22, 304, 405
MalI	GATC	2 cut(s)	419, 543
MboI	GATC	2 cut(s)	417, 541
MboII	GAAGA	7 cut(s)	133, 136, 187, 200, 376, 411, 512
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	2 cut(s)	560, 630
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	3 cut(s)	271, 312, 413
MmeI	TCCRAC	1 cut(s)	129
MseI	TTAA	2 cut(s)	479, 558
MspA1I	CMGCKG	2 cut(s)	38, 343
MvnI	CGCG	2 cut(s)	9, 38
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	2 cut(s)	417, 541
NlaIII	CATG	1 cut(s)	326
NmuCI	GTSAC	3 cut(s)	22, 304, 405
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	37, 40, 461
PleI	GAGTC	3 cut(s)	270, 311, 412
PpsI	GAGTC	3 cut(s)	270, 311, 412
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	343
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	479, 558
SatI	GCNGC	3 cut(s)	36, 39, 460
Sau3AI	GATC	2 cut(s)	417, 541
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	3 cut(s)	271, 312, 413
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	490
SmiI	ATTTAAAT	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	266, 315
SmoI	CTYRAG	2 cut(s)	266, 315
Sse9I	AATT	2 cut(s)	560, 630
SsiI	CCGC	4 cut(s)	36, 38, 41, 139
SspMI	CTAG	2 cut(s)	284, 624
SwaI	ATTTAAAT	1 cut(s)	559
TaqI	TCGA	2 cut(s)	433, 523
TasI	AATT	2 cut(s)	560, 630
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	479, 558
Tru9I	TTAA	2 cut(s)	479, 558
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	3 cut(s)	22, 304, 405
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	3 cut(s)	22, 304, 405
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	2 cut(s)	497, 549
XbaI	TCTAGA	1 cut(s)	623
XspI	CTAG	2 cut(s)	284, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.