Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000048.1

Orthogroup ID

OG0004380

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2916

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1412 bp

ttctacgagcggctatatttggcggggatagtggatcaacttcttcggccaaaggaaccaactatacatttggttttcggtttggtgaatccgaacatattcgttcacaagacgactcaaaaatgttacaaatgttgtttccttttcccactcttcttccttcttttgaggatgatctccgcatgtcagagctcttacctttccagaaaaatagcacccttccatctagagttcttacttggattcagtattttgaaccgagaagtactccacttcccgtggttatagtgcaggaatgtcttaccgcctacattcagaagcaggtggattgtattggcaggcatgtattgtcgaaattgatgaatgattggaagttgatggatgaactggcagtgttgcgtgctatttacttgttagggtcaggtgatctactacagcacttcttgaccataattttcaataagctggataaaggagaaacatgggatgatgatttcgagttaaacactatattgcaggaatctataagaaactccgctgatggtgtgctactaagtgttcctgattcattgattgtatccctcaccaaaaatcaagatttgaatagcaatgagcagcctagtatggcttcccttccctcaactcctcgtaaaagtcgtgctaacagctttggaatggatggacttgatctactacagtttacatacaaggtctcttggccacttgaacttattgcaaatgcagaagcgatcaagaaatataaccaagtcatgggattcttgctgaaggtcaagcgagcaaagtttgtactggataaagctcgaagatggatgtggaagggtagaggcagggcagcgaacagctttaagcatcactggttagtggagcagaaacttctccattttgtggatgcgtttcaccagtatgtgatggacagagtgtatcacaatgcatggcgtgaactttgtgaaggtatggcagccgctcgttctctggatgaagtcattgaagtacatgaggcgtacttgttgtcaattcagcgacagtgctttgtagttccagataagctgtgggctctcattgcaaccaggataaacaacattttgggattagcattggacttttactctatacagctgacacttagtggtggagcagtttctgcaatcaaggccaaatgtgaaatggaagttgaacgtattgagaaacagttcgatgattgcatcgcttttctgctcagagtactctccttcaaactcaatgtaggacacttccctcatttagcagatttggttactaggatcaactacaaccacttttacatgtcagatactggaaacctaaggactctcccaagctctgaaaatgttgcttctagactgggaaaagcttttttaggtagaacagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0090702 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

469

Amino Acids

53.47

Weight (kDa)

7.31

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_C_terminal	PF04130	125 - 440	2.9e-67	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20570 AT1G20570 AT1G20570 AT1G20570 AT1G80260 AT1G80260 AT1G80260
fragaria_vesca	FvH4_2g40750 FvH4_2g40750 FvH4_2g40750
malus_domestica	MD15G1036000.v1.1
prunus_persica	Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1
pyrus_communis	pycom15g03350
rosa_chinensis	RchiOBHm_Chr6g0299841
rosa_laevigata	RLG00000011384
rosa_multiflora	Rmu_ssc0000048.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168330
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403800 Rh6BG412100 Rh6CG418200 Rh6DG405000
rosa_wichuraiana	Rw6G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccB7I	CCANNNNNTGG	2 cut(s)	771, 906
AccBSI	CCGCTC	2 cut(s)	10, 985
AciI	CCGC	6 cut(s)	10, 23, 180, 305, 536, 983
AclWI	GGATC	2 cut(s)	42, 1309
AcoI	YGGCCR	2 cut(s)	47, 718
AcuI	CTGAAG	1 cut(s)	805
AdeI	CACNNNGTG	1 cut(s)	1147
AfaI	GTAC	5 cut(s)	267, 809, 1013, 1024, 1244
AfiI	CCNNNNNNNGG	2 cut(s)	771, 906
AflIII	ACRYGT	1 cut(s)	1322
AgsI	TTSAA	7 cut(s)	256, 459, 603, 727, 1009, 1195, 1254
AjnI	CCWGG	1 cut(s)	1087
AluBI	AGCT	9 cut(s)	192, 465, 668, 820, 863, 1068, 1137, 1358, 1390
AluI	AGCT	9 cut(s)	192, 465, 668, 820, 863, 1068, 1137, 1358, 1390
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	42, 1309
AlwNI	CAGNNNCTG	2 cut(s)	1162, 1333
AoxI	GGCC	3 cut(s)	47, 718, 1172
ApeKI	GCWGC	3 cut(s)	615, 853, 979
Asp700I	GAANNNNTTC	2 cut(s)	98, 1210
AsuHPI	GGTGA	4 cut(s)	97, 436, 576, 910
AxyI	CCTNAGG	1 cut(s)	1342
BalI	TGGCCA	1 cut(s)	720
BanII	GRGCYC	2 cut(s)	194, 1077
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	627, 865, 991
BccI	CCATC	6 cut(s)	231, 372, 535, 673, 821, 924
BciT130I	CCWGG	1 cut(s)	1089
BciVI	GTATCC	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	4 cut(s)	227, 620, 1298, 1376
BfmI	CTRYAG	2 cut(s)	433, 694
BfuAI	ACCTGC	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
BlsI	GCNGC	5 cut(s)	12, 617, 855, 981, 984
BmcAI	AGTACT	2 cut(s)	267, 1244
Bme1390I	CCNGG	1 cut(s)	1089
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	1089
BmrI	ACTGGG	1 cut(s)	1390
BmsI	GCATC	3 cut(s)	879, 900, 1232
BmuI	ACTGGG	1 cut(s)	1390
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	771, 906
Bse1I	ACTGG	6 cut(s)	392, 815, 880, 921, 1338, 1385
Bse21I	CCTNAGG	1 cut(s)	1342
Bse3DI	GCAATG	2 cut(s)	615, 1079
BseBI	CCWGG	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	7 cut(s)	177, 387, 492, 684, 836, 915, 1002
BseLI	CCNNNNNNNGG	2 cut(s)	771, 906
BseMI	GCAATG	2 cut(s)	615, 1079
BseMII	CTCAG	1 cut(s)	1251
BseNI	ACTGG	6 cut(s)	392, 815, 880, 921, 1338, 1385
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	3 cut(s)	627, 865, 991
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	49, 720, 1174
BsiHKAI	GWGCWC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	771, 906
BsmAI	GTCTC	1 cut(s)	717
BsnI	GGCC	3 cut(s)	49, 720, 1174
Bso31I	GGTCTC	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	194, 1077
Bsp143I	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
BspACI	CCGC	6 cut(s)	10, 23, 180, 305, 536, 983
BspANI	GGCC	3 cut(s)	49, 720, 1174
BspCNI	CTCAG	1 cut(s)	1250
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	42, 1309
BspTNI	GGTCTC	1 cut(s)	717
BsrBI	CCGCTC	2 cut(s)	10, 985
BsrDI	GCAATG	2 cut(s)	615, 1079
BsrI	ACTGG	6 cut(s)	392, 815, 880, 921, 1338, 1385
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
Bst2UI	CCWGG	1 cut(s)	1089
Bst4CI	ACNGT	3 cut(s)	698, 1046, 1211
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	1162
BstC8I	GCNNGC	3 cut(s)	340, 401, 797
BstDEI	CTNAG	4 cut(s)	553, 1144, 1237, 1342
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	7 cut(s)	177, 387, 492, 684, 836, 915, 1002
BstKTI	GATC	6 cut(s)	37, 177, 429, 690, 752, 1304
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
BstMWI	GCNNNNNNNGC	3 cut(s)	1081, 1162, 1171
BstNI	CCWGG	1 cut(s)	1089
BstNSI	RCATGY	3 cut(s)	186, 346, 1326
BstSCI	CCNGG	1 cut(s)	1087
BstSFI	CTRYAG	2 cut(s)	433, 694
BstV1I	GCAGC	3 cut(s)	627, 865, 991
Bsu36I	CCTNAGG	1 cut(s)	1342
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	49, 720, 1174
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	1209
BtsCI	GGATG	7 cut(s)	177, 387, 492, 684, 836, 915, 1002
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	3 cut(s)	398, 873, 1051
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	340, 401, 797
CaiI	CAGNNNCTG	2 cut(s)	1162, 1333
Csp6I	GTAC	5 cut(s)	266, 808, 1012, 1023, 1243
CviAII	CATG	7 cut(s)	183, 343, 482, 771, 953, 1015, 1323
CviQI	GTAC	5 cut(s)	266, 808, 1012, 1023, 1243
DdeI	CTNAG	4 cut(s)	553, 1144, 1237, 1342
DpnI	GATC	6 cut(s)	36, 176, 428, 689, 751, 1303
DpnII	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
DraIII	CACNNNGTG	1 cut(s)	1147
EaeI	YGGCCR	2 cut(s)	47, 718
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	2 cut(s)	194, 1077
Eco31I	GGTCTC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	805
Eco81I	CCTNAGG	1 cut(s)	1342
EcoICRI	GAGCTC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	1087
EcoT22I	ATGCAT	1 cut(s)	954
EcoT38I	GRGCYC	2 cut(s)	194, 1077
FaeI	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
FatI	CATG	7 cut(s)	182, 342, 481, 770, 952, 1014, 1322
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
FokI	GGATG	7 cut(s)	184, 394, 499, 691, 843, 922, 1009
FriOI	GRGCYC	2 cut(s)	194, 1077
Fsp4HI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
FspBI	CTAG	4 cut(s)	227, 620, 1298, 1376
GluI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
HaeIII	GGCC	3 cut(s)	49, 720, 1174
Hin1II	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
HindIII	AAGCTT	1 cut(s)	1388
HinfI	GANTC	7 cut(s)	88, 115, 243, 520, 565, 776, 1347
HphI	GGTGA	4 cut(s)	97, 436, 576, 910
Hpy166II	GTNNAC	3 cut(s)	106, 701, 961
Hpy188I	TCNGA	6 cut(s)	93, 189, 317, 1240, 1329, 1362
Hpy188III	TCNNGA	9 cut(s)	204, 227, 444, 562, 595, 753, 994, 1060, 1376
Hpy8I	GTNNAC	3 cut(s)	106, 701, 961
HpyAV	CCTTC	7 cut(s)	170, 229, 643, 780, 831, 964, 1260
HpyCH4III	ACNGT	3 cut(s)	698, 1046, 1211
HpyCH4IV	ACGT	1 cut(s)	1197
HpyCH4V	TGCA	8 cut(s)	291, 516, 736, 742, 952, 1084, 1165, 1223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1081, 1162, 1171
HpyF3I	CTNAG	4 cut(s)	553, 1144, 1237, 1342
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
Kzo9I	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
LmnI	GCTCC	2 cut(s)	885, 1153
Lsp1109I	GCAGC	3 cut(s)	627, 865, 991
LweI	GCATC	3 cut(s)	879, 900, 1232
MaeI	CTAG	4 cut(s)	227, 620, 1298, 1376
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	2 cut(s)	125, 1293
MalI	GATC	6 cut(s)	36, 176, 428, 689, 751, 1303
MbiI	CCGCTC	2 cut(s)	10, 985
MboI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
MboII	GAAGA	4 cut(s)	35, 145, 148, 836
MhlI	GDGCHC	2 cut(s)	194, 1077
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	3 cut(s)	355, 452, 1034
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	109, 1341
MnlI	CCTC	7 cut(s)	162, 592, 648, 656, 838, 1011, 1286
Mox20I	TGGCCA	1 cut(s)	720
Mph1103I	ATGCAT	1 cut(s)	954
MroXI	GAANNNNTTC	2 cut(s)	98, 1210
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	2 cut(s)	502, 866
MslI	CAYNNNNRTG	1 cut(s)	923
Msp20I	TGGCCA	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	538, 1137
MspR9I	CCNGG	1 cut(s)	1089
MvaI	CCWGG	1 cut(s)	1089
MwoI	GCNNNNNNNGC	3 cut(s)	1081, 1162, 1171
NdeII	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
NlaIII	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
NlaIV	GGNNCC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	954
NspI	RCATGY	3 cut(s)	186, 346, 1326
PaqCI	CACCTGC	1 cut(s)	312
PciI	ACATGT	1 cut(s)	1322
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	2 cut(s)	98, 1210
PfeI	GAWTC	5 cut(s)	88, 243, 520, 565, 776
PflMI	CCANNNNNTGG	2 cut(s)	771, 906
PkrI	GCNGC	5 cut(s)	12, 617, 855, 981, 984
PleI	GAGTC	2 cut(s)	109, 1341
PpsI	GAGTC	2 cut(s)	109, 1341
PscI	ACATGT	1 cut(s)	1322
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	1087
PspGI	CCWGG	1 cut(s)	1087
PspN4I	GGNNCC	1 cut(s)	57
PsrI	GAACNNNNNNTAC	2 cut(s)	48, 80
PstNI	CAGNNNCTG	2 cut(s)	1162, 1333
PvuII	CAGCTG	1 cut(s)	1137
RsaI	GTAC	5 cut(s)	267, 809, 1013, 1024, 1244
RsaNI	GTAC	5 cut(s)	266, 808, 1012, 1023, 1243
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	502, 866
SatI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
Sau3AI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
ScaI	AGTACT	2 cut(s)	267, 1244
SchI	GAGTC	2 cut(s)	109, 1341
ScrFI	CCNGG	1 cut(s)	1089
SduI	GDGCHC	2 cut(s)	194, 1077
SfaNI	GCATC	3 cut(s)	879, 900, 1232
SfcI	CTRYAG	2 cut(s)	433, 694
SmiMI	CAYNNNNRTG	1 cut(s)	923
Sse9I	AATT	3 cut(s)	355, 452, 1034
SsiI	CCGC	6 cut(s)	10, 23, 180, 305, 536, 983
SspMI	CTAG	4 cut(s)	227, 620, 1298, 1376
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	1087
TaaI	ACNGT	3 cut(s)	698, 1046, 1211
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	4 cut(s)	352, 497, 822, 1214
TasI	AATT	3 cut(s)	355, 452, 1034
TatI	WGTACW	4 cut(s)	265, 807, 1011, 1242
TauI	GCSGC	2 cut(s)	13, 985
TfiI	GAWTC	5 cut(s)	88, 243, 520, 565, 776
Tru1I	TTAA	2 cut(s)	502, 866
Tru9I	TTAA	2 cut(s)	502, 866
TscAI	CASTG	3 cut(s)	398, 880, 1051
TseI	GCWGC	3 cut(s)	615, 853, 979
TspDTI	ATGAA	4 cut(s)	376, 398, 557, 1013
TspRI	CASTG	3 cut(s)	398, 880, 1051
Van91I	CCANNNNNTGG	2 cut(s)	771, 906
XbaI	TCTAGA	2 cut(s)	226, 1375
XceI	RCATGY	3 cut(s)	186, 346, 1326
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1067, 1182
XmnI	GAANNNNTTC	2 cut(s)	98, 1210
XspI	CTAG	4 cut(s)	227, 620, 1298, 1376
ZrmI	AGTACT	2 cut(s)	267, 1244
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.