Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000076.1

Orthogroup ID

OG0015676

Physical Location & Seq

Genomic Coordinates Forward (+)

37773 .. 38828

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggcggcacagaaagtagtgctgagaaatggagagcttactcctactactacttcatcaaagaattcaggtgcaacatgtgactctgaagctagaaaaggagatctaaatgtaacatgtaaacttgatcataaaagtagtagtgctaagaagaagttgaaagttgctcatcatgatcactttgtagcttttggaaaggacagtaataaggcttcaaagtacaacttcaacggaagaccacaaatcaaattgaaccaaaagggtgggatcaaaatattgaaaactgctgccagcagtacgagcagcaacattggaattcttagtaaacactctcaagtagatgaagaaactagacggcttcttgaagcagaaagagagatagtaaatctgatgcataaagattataagggatcctccggagggagtatgggtcgccgcaagccacccatacacaaccaagagccacagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.2

Weight (kDa)

9.93

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46170 FvH4_6g46170
malus_domestica	MD09G1076400.v1.1 MD09G1076500.v1.1 MD17G1067000.v1.1
prunus_persica	Prupe.3G247600_v2.0.a1
rosa_laevigata	RLG00000021470
rosa_multiflora	Rmu_sc0000946.1_g000003 Rmu_ssc0000076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00086450
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577100 Rh2BG588200 Rh2CG559000 Rh2DG598800
rosa_wichuraiana	Rw2G047920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	2 cut(s)	5, 436
AclWI	GGATC	3 cut(s)	275, 405, 418
AcsI	RAATTY	2 cut(s)	64, 315
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	221, 298
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	2 cut(s)	77, 116
AgsI	TTSAA	6 cut(s)	160, 216, 229, 253, 280, 365
AluBI	AGCT	3 cut(s)	37, 92, 188
AluI	AGCT	3 cut(s)	37, 92, 188
AlwI	GGATC	3 cut(s)	275, 405, 418
Aor13HI	TCCGGA	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	287, 303
ApoI	RAATTY	2 cut(s)	64, 315
BamHI	GGATCC	1 cut(s)	410
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	274, 315
BceAI	ACGGC	1 cut(s)	371
BclI	TGATCA	2 cut(s)	127, 175
BfaI	CTAG	2 cut(s)	93, 351
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	4 cut(s)	6, 288, 304, 436
BlsI	GCNGC	4 cut(s)	7, 289, 305, 437
BmiI	GGNNCC	1 cut(s)	412
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	274, 315
BsiSI	CCGG	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	5 cut(s)	103, 127, 175, 267, 410
BspACI	CCGC	2 cut(s)	5, 436
BspCNI	CTCAG	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	3 cut(s)	275, 405, 418
BssMI	GATC	5 cut(s)	103, 127, 175, 267, 410
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	292, 440
BstDEI	CTNAG	3 cut(s)	23, 147, 320
BstKTI	GATC	5 cut(s)	106, 130, 178, 270, 413
BstMBI	GATC	5 cut(s)	103, 127, 175, 267, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNSI	RCATGY	2 cut(s)	81, 120
BstV1I	GCAGC	2 cut(s)	274, 315
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	103, 410
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	2 cut(s)	103, 410
Cac8I	GCNNGC	2 cut(s)	292, 440
CciI	TCATGA	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	220, 297
CviAII	CATG	3 cut(s)	78, 117, 173
CviJI	RGCY	7 cut(s)	37, 92, 188, 212, 358, 442, 463
CviKI_1	RGCY	7 cut(s)	37, 92, 188, 212, 358, 442, 463
CviQI	GTAC	2 cut(s)	220, 297
DdeI	CTNAG	3 cut(s)	23, 147, 320
DpnI	GATC	5 cut(s)	105, 129, 177, 269, 412
DpnII	GATC	5 cut(s)	103, 127, 175, 267, 410
Eco57I	CTGAAG	1 cut(s)	108
EcoRI	GAATTC	2 cut(s)	64, 315
EcoT22I	ATGCAT	1 cut(s)	396
FaeI	CATG	3 cut(s)	81, 120, 176
FaiI	YATR	8 cut(s)	79, 118, 132, 174, 396, 405, 428, 449
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	3 cut(s)	77, 116, 172
FbaI	TGATCA	2 cut(s)	127, 175
Fnu4HI	GCNGC	4 cut(s)	6, 288, 304, 436
Fsp4HI	GCNGC	4 cut(s)	6, 288, 304, 436
FspBI	CTAG	2 cut(s)	93, 351
GluI	GCNGC	4 cut(s)	6, 288, 304, 436
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	3 cut(s)	81, 120, 176
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	122, 326
Hpy188I	TCNGA	2 cut(s)	88, 390
Hpy188III	TCNNGA	3 cut(s)	173, 362, 417
Hpy8I	GTNNAC	2 cut(s)	122, 326
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	74, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	3 cut(s)	23, 147, 320
Hsp92II	CATG	3 cut(s)	81, 120, 176
Kpn2I	TCCGGA	1 cut(s)	416
Ksp22I	TGATCA	2 cut(s)	127, 175
Kzo9I	GATC	5 cut(s)	103, 127, 175, 267, 410
LpnPI	CCDG	3 cut(s)	54, 304, 430
Lsp1109I	GCAGC	2 cut(s)	274, 315
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	2 cut(s)	93, 351
MaeIII	GTNAC	2 cut(s)	80, 112
MalI	GATC	5 cut(s)	105, 129, 177, 269, 412
MboI	GATC	5 cut(s)	103, 127, 175, 267, 410
MboII	GAAGA	3 cut(s)	163, 246, 356
MflI	RGATCY	2 cut(s)	103, 410
MluCI	AATT	3 cut(s)	64, 248, 315
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	413, 424
Mph1103I	ATGCAT	1 cut(s)	396
MroI	TCCGGA	1 cut(s)	416
MspI	CCGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	300
NdeII	GATC	5 cut(s)	103, 127, 175, 267, 410
NlaIII	CATG	3 cut(s)	81, 120, 176
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	2 cut(s)	81, 120
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	2 cut(s)	77, 116
PkrI	GCNGC	4 cut(s)	7, 289, 305, 437
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	2 cut(s)	77, 116
PsiI	TTATAA	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	103, 410
RsaI	GTAC	2 cut(s)	221, 298
RsaNI	GTAC	2 cut(s)	220, 297
SatI	GCNGC	4 cut(s)	6, 288, 304, 436
Sau3AI	GATC	5 cut(s)	103, 127, 175, 267, 410
SchI	GAGTC	1 cut(s)	77
SetI	ASST	4 cut(s)	39, 73, 94, 190
SfaNI	GCATC	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	3 cut(s)	64, 248, 315
SsiI	CCGC	2 cut(s)	5, 436
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	2 cut(s)	93, 351
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	3 cut(s)	64, 248, 315
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	2 cut(s)	8, 438
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	287, 303
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	45, 357
TspGWI	ACGGA	1 cut(s)	246
XapI	RAATTY	2 cut(s)	64, 315
XceI	RCATGY	2 cut(s)	81, 120
XspI	CTAG	2 cut(s)	93, 351
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.