Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000085.1

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Forward (+)

135 .. 2128

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgctggctgatgaattgacatcacaggtcacttcaagctcggtaaggctagtcagttctacatctagggatctgaagaatgagtggcatgctcctgcaggctattcgattaatgtagcaacagccaatgccacccaggttttattggcaactggaggaaagcatttagtttatttagaaattggtgacggggtcttgatagagaagaagtatgtacagttggactttgagatctcatgccttgacataaaccccataggtgaaaatcctaattatagccagctagcagctgttgggatgtggacagatataagtgtgcaaatatactctcttcctgatctgaaccgcatcacaaaggagcatttgggaggagagatcatacctcgttctgttcttctctgtacttttgaagggatatcctatctgttatgtgctcttggtgatggacacctcttaaactttacactgaacacaactactggcgaattaacagacaggaagaaagtctctcttgggacgcagcccattacactccgtactttctcatctaagaatactactcatgtgtttgctgcatcggatagaccaactgtcatctacagtagtaacaagaaactgctttacagcaatgtaaatttgaaagaagtcagccatatgtgcccattcaactctgctgctttcccagacagccttgcgattgctaaagaaggtgaacttaccattggcacaattgatgacatccagaagcttcatatccgttctattcctctaggggagcatgcacgccgcatctgccatcaggagcagtcgaggacctttgcaatatgtagtgtaaaaaataatcagactggtgcagaggattctgaaacacacttcatccgtttgttagatgaccaaagttttgacctcgtgacgtattatcaacttgatgctttcgagatggcagatgaatctttttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

320

Amino Acids

35.44

Weight (kDa)

5.26

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_2nd	PF23726	9 - 244	7.1e-49	RSE1/DDB1/CPSF1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	346, 787
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	3 cut(s)	216, 403, 538
AgsI	TTSAA	4 cut(s)	36, 410, 640, 667
AhdI	GACNNNNNGTC	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	135
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	4 cut(s)	39, 283, 290, 748
AluI	AGCT	4 cut(s)	39, 283, 290, 748
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	78
ApeKI	GCWGC	4 cut(s)	287, 520, 572, 674
ApoI	RAATTY	1 cut(s)	634
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AseI	ATTAAT	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	813
AsuHPI	GGTGA	4 cut(s)	197, 272, 452, 722
AsuNHI	GCTAGC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	813
BaeGI	GKGCMC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	908
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	299, 532, 559, 661
BccI	CCATC	3 cut(s)	437, 804, 934
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	4 cut(s)	50, 66, 284, 770
BfmI	CTRYAG	2 cut(s)	96, 598
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	5 cut(s)	288, 521, 573, 675, 787
BlsI	GCNGC	5 cut(s)	289, 522, 574, 676, 788
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	813
BmeRI	GACNNNNNGTC	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	4 cut(s)	357, 584, 798, 919
BmtI	GCTAGC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	157, 484, 853
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	303, 738, 876
BseMI	GCAATG	1 cut(s)	634
BseNI	ACTGG	3 cut(s)	157, 484, 853
BseRI	GAGGAG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	299, 532, 559, 661
BsgI	GTGCAG	1 cut(s)	873
BsiHKAI	GWGCWC	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	436, 662
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	70, 231, 337, 375
BspACI	CCGC	2 cut(s)	346, 787
BspMAI	CTGCAG	1 cut(s)	100
BspOI	GCTAGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	634
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	3 cut(s)	157, 484, 853
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	70, 231, 337, 375
BssSI	CACGAG	1 cut(s)	908
Bst2BI	CACGAG	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	219, 592, 602
Bst6I	CTCTTC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	7 cut(s)	6, 90, 100, 281, 285, 780, 784
BstDEI	CTNAG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	303, 738, 876
BstKTI	GATC	4 cut(s)	73, 234, 340, 378
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	4 cut(s)	70, 231, 337, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	657, 792
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	92, 782
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	2 cut(s)	96, 598
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	299, 532, 559, 661
BstX2I	RGATCY	2 cut(s)	70, 231
BstYI	RGATCY	2 cut(s)	70, 231
BtsCI	GGATG	3 cut(s)	303, 738, 876
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	7 cut(s)	6, 90, 100, 281, 285, 780, 784
Cfr13I	GGNCC	1 cut(s)	813
CseI	GACGC	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	215, 402, 537
CviAII	CATG	4 cut(s)	89, 237, 563, 779
CviQI	GTAC	3 cut(s)	215, 402, 537
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	4 cut(s)	72, 233, 339, 377
DpnII	GATC	4 cut(s)	70, 231, 337, 375
DriI	GACNNNNNGTC	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	417
FaeI	CATG	4 cut(s)	92, 240, 566, 782
FalI	AAGNNNNNCTT	4 cut(s)	495, 527, 699, 731
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	4 cut(s)	88, 236, 562, 778
FauNDI	CATATG	1 cut(s)	654
Fnu4HI	GCNGC	5 cut(s)	288, 521, 573, 675, 787
FokI	GGATG	3 cut(s)	310, 725, 863
Fsp4HI	GCNGC	5 cut(s)	288, 521, 573, 675, 787
FspBI	CTAG	4 cut(s)	50, 66, 284, 770
GluI	GCNGC	5 cut(s)	288, 521, 573, 675, 787
GsuI	CTGGAG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	92, 240, 566, 782
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	2 cut(s)	860, 950
HphI	GGTGA	4 cut(s)	197, 272, 452, 722
Hpy166II	GTNNAC	2 cut(s)	303, 713
Hpy188I	TCNGA	5 cut(s)	75, 342, 580, 846, 865
Hpy188III	TCNNGA	6 cut(s)	196, 335, 742, 800, 910, 937
Hpy8I	GTNNAC	2 cut(s)	303, 713
HpyAV	CCTTC	2 cut(s)	404, 701
HpyCH4III	ACNGT	3 cut(s)	219, 592, 602
HpyCH4IV	ACGT	1 cut(s)	914
HpyCH4V	TGCA	6 cut(s)	98, 319, 575, 782, 821, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	657, 792
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	1 cut(s)	914
Hsp92II	CATG	4 cut(s)	92, 240, 566, 782
Kzo9I	GATC	4 cut(s)	70, 231, 337, 375
LmnI	GCTCC	4 cut(s)	97, 358, 775, 802
Lsp1109I	GCAGC	4 cut(s)	299, 532, 559, 661
LweI	GCATC	4 cut(s)	357, 584, 798, 919
MaeI	CTAG	4 cut(s)	50, 66, 284, 770
MaeII	ACGT	1 cut(s)	914
MaeIII	GTNAC	4 cut(s)	28, 185, 605, 910
MalI	GATC	4 cut(s)	72, 233, 339, 377
MboI	GATC	4 cut(s)	70, 231, 337, 375
MboII	GAAGA	5 cut(s)	88, 217, 323, 386, 511
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	2 cut(s)	70, 231
MhlI	GDGCHC	2 cut(s)	436, 662
MluCI	AATT	6 cut(s)	14, 180, 271, 485, 634, 729
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	8 cut(s)	149, 362, 393, 461, 777, 804, 850, 917
MseI	TTAA	3 cut(s)	111, 455, 488
MspA1I	CMGCKG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	657, 792
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	4 cut(s)	70, 231, 337, 375
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	92, 240, 566, 782
NmuCI	GTSAC	3 cut(s)	28, 185, 910
NspI	RCATGY	2 cut(s)	92, 782
PaeI	GCATGC	2 cut(s)	92, 782
PfeI	GAWTC	2 cut(s)	860, 950
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	289, 522, 574, 676, 788
PpuMI	RGGWCCY	1 cut(s)	813
PshBI	ATTAAT	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	813
PspPPI	RGGWCCY	1 cut(s)	813
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	70, 231
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	216, 403, 538
RsaNI	GTAC	3 cut(s)	215, 402, 537
SaqAI	TTAA	3 cut(s)	111, 455, 488
SatI	GCNGC	5 cut(s)	288, 521, 573, 675, 787
Sau3AI	GATC	4 cut(s)	70, 231, 337, 375
Sau96I	GGNCC	1 cut(s)	813
SbfI	CCTGCAGG	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	137
SdaI	CCTGCAGG	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	436, 662
SfaNI	GCATC	4 cut(s)	357, 584, 798, 919
SfcI	CTRYAG	2 cut(s)	96, 598
SinI	GGWCC	1 cut(s)	813
SphI	GCATGC	2 cut(s)	92, 782
Sse8387I	CCTGCAGG	1 cut(s)	100
Sse9I	AATT	6 cut(s)	14, 180, 271, 485, 634, 729
SsiI	CCGC	2 cut(s)	346, 787
SspMI	CTAG	4 cut(s)	50, 66, 284, 770
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	219, 592, 602
TaiI	ACGT	1 cut(s)	917
TaqI	TCGA	3 cut(s)	107, 809, 936
TasI	AATT	6 cut(s)	14, 180, 271, 485, 634, 729
TatI	WGTACW	2 cut(s)	214, 401
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	2 cut(s)	860, 950
Tru1I	TTAA	3 cut(s)	111, 455, 488
Tru9I	TTAA	3 cut(s)	111, 455, 488
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	28, 185, 910
TseI	GCWGC	4 cut(s)	287, 520, 572, 674
Tsp45I	GTSAC	3 cut(s)	28, 185, 910
TspDTI	ATGAA	4 cut(s)	27, 740, 865, 963
TspGWI	ACGGA	3 cut(s)	524, 746, 869
TspRI	CASTG	1 cut(s)	471
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	813
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	2 cut(s)	92, 782
XspI	CTAG	4 cut(s)	50, 66, 284, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.