Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000099.1

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Forward (+)

18147 .. 25288

Gene Structure 7142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

atgcgagccgagctcgccgatctccgccacgttaccgaggcggccttggacggtggattcagaggccgcggctttgttctcgacgttctgcgacggtttgagttcctcaagctcgcgtataagtaccactgctctgctgaggatgaggttatttttcgagcgctagatggacgaacaaaaaacatagcttgtacatattcgttggagcataggagtatagatggtctttttgaatctatttttagtcgtttggatgtattgttagaggaaagtaaagatatttcaaaggaatttcaggaacttgtgttctgcatcgggacgctccaggcattcatttgccagcatatggtgaaagaagaagaacaggtttttcctttgctcctgcagcaattctctgtgatggagcaggcttcactcgtgtggcagttcatgtgtagtatacctttagtgctgctagaggatcttctaccatggatgatctcctctcttcaaactgatgaaaaagaggaagtcatacattgcataaaagaaattgtacctgatgaaaaatatctccaagaggtagtaagctcgtggcttgctaacaagggccaggctcgacacactggtgatgatgaatctgcagatatgaaaaagttactcaagtctcattcccctaagaggttctttaaagaaaattggagttgcatgaagaaagacagcatccaaactgatactggatacagtcctgttgatgggcttcatctttggcatggtgccataaggaaagatctagaaaaaattatgggagagctttatcaattgagaagctcagccaattttctagatattgattcaatagttgtccagctaaagtttcttgctgatgtccttactttctacagcaatgcgttggagaagttagttcaccctgtgttaagtgaacttgtcaatggctgtccgtacccttctattgagaaatttcccaatgaaaggcttctggaaagtttgcagaatttactataccatagccttgaaaatggaacacctttgggaaaatttgttgaaaagctttgccgggaatttgagtgtcttgtggtgttagtccgcaaacattttgctgtccacgaaacagaggtatttcccattataaggaagaactgtagccatgaaatgcaacagcaacttgtgtatgtcagccttcatattatgccacttgggttgctgaagtgtgtgactacttggttttcagcttgcttatctgaggatgagtccaggtcaattcttagcagcatgaagcagcgagatttcgtagtcaatgaatcttttgtatccctgttacatgagtggttccgtattggccattcaggtaaaacctcaattgaaaatttccgagaggacttgcagcaaatattcaagagcagatgcactttcttatgcaaccaattacatggcagtactgcgtgttcatctgtaagctccaatatgcaacatcaagggaaatcaaacactggggtaatggaactaatttcttcaaacaagggaaagaactctatgccatactcttcatcttttgcccccgactcttctaagtattctgagatgacaaactcaagaggaatcaatctccaagtatacttctctggaatgaaaacatcttatcatatttctgaaagtcttagtggagaaaatttgagtggttacggtctccatgaaccaaaaccaatagatctcatatttttcttccacaaggctctcaggaaggatttggattaccttgtccttggttcagctgagttggctgaaaatgcagcttcccttacaaatttttgccggcggtttagtcttatacagttcttacatcaaatacatagtgaagcagaggacgaggttgcctttccagccttggaggcaaagggaaaatgtcaaaacattagccagtcgtacacactggaccacaaactagaggttgaactcttccaaaaaatatccttcattctagatgagatgtctaaattgcatttttcagtttctatggttgattcaaacacaatggaccagatgtcgccaaagcactatcagttgtgcatgaggcttcatggtatttgcaaatctatgagcaaattactgactgaccatattcatcgtgaagaagttgaactttggcccttgtttagagaatgcttctccattgaagagcaagaaaggattgtggggtgcatacttggtagaacagaagcgaaaatattacaagatatgataccctggctgatggaatctttgacaccagaagaacagcatgccatgatatctatatggcgccaggtcacaagaaacacaatgtttgatgagtggttgaaagaatggtgggaggggtatgatgcaggcaaggtggtgcaggagtcaagtcttcccccttcaaagactgtagatcccttggactttgtctctacgtacttgtgtggactggatgaacaagaaagaagtatcttcaacagaaacattgactttcccgaaaaagattcccctgatactaatactaagccattacaaatcagtgaggtgaatcataagctgagggatgctgataatcaccaatgtaattacaactctacagaatctggaagtcttgcagaaggtaagaagatgaagtatgaagacattgaaaatgccatagatcaaatcaatgatccaggacaactttttcaagcaagtcagaaaacggcttattccgtagaccggaaacttgtctcgaatgttggcttggtagatgatggacttcatggcctcaaacttgagacaagggtcgacacttttaagtatcttcaagatgttgcagaccccaaaaagcttgtcacaggcctggctggtggcacccttgagggtcattatgttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

959

Amino Acids

109.82

Weight (kDa)

5.47

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	1 - 127	1.1e-06	Hemerythrin HHE cation binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
AccB1I	GGYRCC	3 cut(s)	755, 2298, 2852
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	4 cut(s)	439, 1614, 2715, 2787
AccII	CGCG	2 cut(s)	69, 116
AciI	CCGC	6 cut(s)	25, 41, 67, 69, 1087, 1816
AclWI	GGATC	3 cut(s)	468, 2405, 2663
AcoI	YGGCCR	1 cut(s)	1339
AcsI	RAATTY	8 cut(s)	290, 959, 994, 1037, 1061, 1366, 1669, 1804
AcuI	CTGAAG	1 cut(s)	1226
AcyI	GRCGYC	1 cut(s)	2299
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	7 cut(s)	125, 193, 537, 944, 1438, 1925, 2435
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	6 cut(s)	346, 660, 734, 972, 1131, 2718
AhdI	GACNNNNNGTC	1 cut(s)	2041
AjnI	CCWGG	7 cut(s)	324, 591, 1253, 2243, 2301, 2671, 2841
AjuI	GAANNNNNNNTTGG	2 cut(s)	2726, 2758
AleI	CACNNNNGTG	2 cut(s)	418, 606
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	5 cut(s)	651, 1691, 2431, 2734, 2771
AlwI	GGATC	3 cut(s)	468, 2405, 2663
AlwNI	CAGNNNCTG	1 cut(s)	2600
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	7 cut(s)	42, 64, 589, 1339, 2144, 2764, 2839
ApeKI	GCWGC	6 cut(s)	385, 451, 1269, 1279, 1384, 1790
ApoI	RAATTY	8 cut(s)	290, 959, 994, 1037, 1061, 1366, 1669, 1804
ArsI	GACNNNNNNTTYG	2 cut(s)	2817, 2849
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	2 cut(s)	163, 2301
AspS9I	GGNCC	4 cut(s)	589, 1933, 2035, 2145
AsuC2I	CCSGG	1 cut(s)	1058
AsuHPI	GGTGA	5 cut(s)	361, 620, 899, 2554, 2564
AvaII	GGWCC	2 cut(s)	1933, 2035
BalI	TGGCCA	1 cut(s)	1341
BanI	GGYRCC	3 cut(s)	755, 2298, 2852
BanII	GRGCYC	1 cut(s)	15
BauI	CACGAG	2 cut(s)	416, 571
BbsI	GAAGAC	2 cut(s)	2381, 2643
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	2 cut(s)	138, 2555
BbvI	GCAGC	6 cut(s)	397, 438, 1281, 1291, 1396, 1802
BccI	CCATC	6 cut(s)	161, 215, 394, 728, 2245, 2747
BceAI	ACGGC	1 cut(s)	2718
BciT130I	CCWGG	7 cut(s)	326, 593, 1255, 2245, 2303, 2673, 2843
BciVI	GTATCC	2 cut(s)	713, 1321
BcnI	CCSGG	1 cut(s)	1058
BcoDI	GTCTC	5 cut(s)	651, 1691, 2431, 2734, 2771
BfaI	CTAG	6 cut(s)	164, 455, 773, 824, 1943, 1979
BfmI	CTRYAG	6 cut(s)	383, 621, 880, 1141, 2406, 2592
BfoI	RGCGCY	2 cut(s)	164, 2302
BfuI	GTATCC	2 cut(s)	713, 1321
BglI	GCCNNNNNGGC	1 cut(s)	1889
BglII	AGATCT	2 cut(s)	769, 1708
BisI	GCNGC	9 cut(s)	42, 67, 70, 386, 452, 1270, 1280, 1385, 1791
BlpI	GCTNAGC	1 cut(s)	811
BlsI	GCNGC	9 cut(s)	43, 68, 71, 387, 453, 1271, 1281, 1386, 1792
BmcAI	AGTACT	1 cut(s)	1438
Bme1390I	CCNGG	8 cut(s)	326, 593, 1058, 1255, 2245, 2303, 2673, 2843
Bme18I	GGWCC	2 cut(s)	1933, 2035
BmeRI	GACNNNNNGTC	1 cut(s)	2041
BmgT120I	GGNCC	4 cut(s)	589, 1933, 2035, 2145
BmiI	GGNNCC	4 cut(s)	757, 1331, 2300, 2854
BmrFI	CCNGG	8 cut(s)	326, 593, 1058, 1255, 2245, 2303, 2673, 2843
BmrI	ACTGGG	1 cut(s)	1500
BmsI	GCATC	5 cut(s)	321, 711, 1394, 2350, 2551
BmuI	ACTGGG	1 cut(s)	1500
BoxI	GACNNNNGTC	1 cut(s)	2783
BpiI	GAAGAC	2 cut(s)	2381, 2643
BplI	GAGNNNNNCTC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	2 cut(s)	138, 2555
Bpu1102I	GCTNAGC	1 cut(s)	811
BpuEI	CTTGAG	5 cut(s)	92, 626, 1576, 2795, 2879
BpuMI	CCSGG	1 cut(s)	1058
BsaAI	YACGTR	1 cut(s)	2433
BsaHI	GRCGYC	1 cut(s)	2299
BsaI	GGTCTC	1 cut(s)	1691
BsaJI	CCNNGG	8 cut(s)	36, 45, 67, 470, 1762, 1884, 2243, 2415
BsaWI	WCCGGW	1 cut(s)	2718
Bsc4I	CCNNNNNNNGG	6 cut(s)	346, 660, 734, 972, 1131, 2718
Bse118I	RCCGGY	1 cut(s)	1812
Bse1I	ACTGG	6 cut(s)	610, 721, 1495, 1918, 1935, 2451
Bse3DI	GCAATG	2 cut(s)	517, 892
BseBI	CCWGG	7 cut(s)	326, 593, 1255, 2245, 2303, 2673, 2843
BseDI	CCNNGG	8 cut(s)	36, 45, 67, 470, 1762, 1884, 2243, 2415
BseGI	GGATG	7 cut(s)	148, 259, 480, 702, 1252, 2455, 2566
BseLI	CCNNNNNNNGG	6 cut(s)	346, 660, 734, 972, 1131, 2718
BseMI	GCAATG	2 cut(s)	517, 892
BseMII	CTCAG	7 cut(s)	129, 825, 1233, 1569, 1750, 1764, 2546
BseNI	ACTGG	6 cut(s)	610, 721, 1495, 1918, 1935, 2451
BseRI	GAGGAG	1 cut(s)	472
BseXI	GCAGC	6 cut(s)	397, 438, 1281, 1291, 1396, 1802
BsgI	GTGCAG	1 cut(s)	2396
Bsh1236I	CGCG	2 cut(s)	69, 116
BshFI	GGCC	7 cut(s)	44, 66, 591, 1341, 2146, 2766, 2841
BshNI	GGYRCC	3 cut(s)	755, 2298, 2852
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	1057, 1813, 2719
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	6 cut(s)	346, 660, 734, 972, 1131, 2718
BsmAI	GTCTC	5 cut(s)	651, 1691, 2431, 2734, 2771
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	2 cut(s)	329, 2165
BsnI	GGCC	7 cut(s)	44, 66, 591, 1341, 2146, 2766, 2841
Bso31I	GGTCTC	1 cut(s)	1691
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
Bsp1720I	GCTNAGC	1 cut(s)	811
Bsp19I	CCATGG	1 cut(s)	470
BspACI	CCGC	6 cut(s)	25, 41, 67, 69, 1087, 1816
BspANI	GGCC	7 cut(s)	44, 66, 591, 1341, 2146, 2766, 2841
BspCNI	CTCAG	7 cut(s)	130, 824, 1234, 1570, 1749, 1765, 2547
BspFNI	CGCG	2 cut(s)	69, 116
BspLI	GGNNCC	4 cut(s)	757, 1331, 2300, 2854
BspMAI	CTGCAG	2 cut(s)	387, 625
BspPI	GGATC	3 cut(s)	468, 2405, 2663
BspQI	GCTCTTC	1 cut(s)	2169
BspT107I	GGYRCC	3 cut(s)	755, 2298, 2852
BspTNI	GGTCTC	1 cut(s)	1691
BsrDI	GCAATG	2 cut(s)	517, 892
BsrFI	RCCGGY	1 cut(s)	1812
BsrGI	TGTACA	1 cut(s)	191
BsrI	ACTGG	6 cut(s)	610, 721, 1495, 1918, 1935, 2451
BssAI	RCCGGY	1 cut(s)	1812
BssECI	CCNNGG	8 cut(s)	36, 45, 67, 470, 1762, 1884, 2243, 2415
BssMI	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
BssNAI	GTATAC	2 cut(s)	440, 1615
BssNI	GRCGYC	1 cut(s)	2299
BssSI	CACGAG	2 cut(s)	416, 571
BssT1I	CCWWGG	5 cut(s)	45, 470, 1762, 1884, 2415
Bst1107I	GTATAC	2 cut(s)	440, 1615
Bst2BI	CACGAG	2 cut(s)	416, 571
Bst2UI	CCWGG	7 cut(s)	326, 593, 1255, 2245, 2303, 2673, 2843
Bst4CI	ACNGT	7 cut(s)	53, 96, 725, 1142, 1685, 1833, 2407
Bst6I	CTCTTC	5 cut(s)	492, 1549, 1570, 1961, 2169
BstACI	GRCGYC	1 cut(s)	2299
BstAUI	TGTACA	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	2433
BstDSI	CCRYGG	2 cut(s)	67, 470
BstF5I	GGATG	7 cut(s)	148, 259, 480, 702, 1252, 2455, 2566
BstFNI	CGCG	2 cut(s)	69, 116
BstH2I	RGCGCY	2 cut(s)	164, 2302
BstHHI	GCGC	2 cut(s)	163, 2301
BstKTI	GATC	8 cut(s)	22, 463, 480, 772, 1711, 2413, 2659, 2671
BstMAI	GTCTC	5 cut(s)	651, 1691, 2431, 2734, 2771
BstMBI	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 14, 385, 1778, 1787, 1880, 1889
BstNI	CCWGG	7 cut(s)	326, 593, 1255, 2245, 2303, 2673, 2843
BstNSI	RCATGY	1 cut(s)	2282
BstPAI	GACNNNNGTC	1 cut(s)	2783
BstSCI	CCNGG	8 cut(s)	324, 591, 1056, 1253, 2243, 2301, 2671, 2841
BstSFI	CTRYAG	6 cut(s)	383, 621, 880, 1141, 2406, 2592
BstSNI	TACGTA	1 cut(s)	2433
BstUI	CGCG	2 cut(s)	69, 116
BstV1I	GCAGC	6 cut(s)	397, 438, 1281, 1291, 1396, 1802
BstV2I	GAAGAC	2 cut(s)	2381, 2643
BstX2I	RGATCY	4 cut(s)	460, 769, 1708, 2410
BstXI	CCANNNNNNTGG	1 cut(s)	1430
BstYI	RGATCY	4 cut(s)	460, 769, 1708, 2410
BstZ17I	GTATAC	2 cut(s)	440, 1615
BsuI	GTATCC	2 cut(s)	713, 1321
BsuRI	GGCC	7 cut(s)	44, 66, 591, 1341, 2146, 2766, 2841
BtgI	CCRYGG	2 cut(s)	67, 470
BtsCI	GGATG	7 cut(s)	148, 259, 480, 702, 1252, 2455, 2566
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	5 cut(s)	127, 603, 1488, 1928, 2542
CaiI	CAGNNNCTG	1 cut(s)	2600
CfoI	GCGC	2 cut(s)	163, 2301
Cfr10I	RCCGGY	1 cut(s)	1812
Cfr13I	GGNCC	4 cut(s)	589, 1933, 2035, 2145
Cfr42I	CCGCGG	1 cut(s)	70
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	7 cut(s)	124, 192, 536, 943, 1437, 1924, 2434
CspCI	CAANNNNNGTGG	2 cut(s)	1182, 1217
CviQI	GTAC	7 cut(s)	124, 192, 536, 943, 1437, 1924, 2434
DinI	GGCGCC	1 cut(s)	2300
DpnI	GATC	8 cut(s)	21, 462, 479, 771, 1710, 2412, 2658, 2670
DpnII	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
DraI	TTTAAA	1 cut(s)	670
DraIII	CACNNNGTG	1 cut(s)	913
DriI	GACNNNNNGTC	1 cut(s)	2041
EaeI	YGGCCR	1 cut(s)	1339
Eam1104I	CTCTTC	5 cut(s)	492, 1549, 1570, 1961, 2169
Eam1105I	GACNNNNNGTC	1 cut(s)	2041
EarI	CTCTTC	5 cut(s)	492, 1549, 1570, 1961, 2169
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	13
Eco105I	TACGTA	1 cut(s)	2433
Eco130I	CCWWGG	5 cut(s)	45, 470, 1762, 1884, 2415
Eco147I	AGGCCT	1 cut(s)	2841
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	1691
Eco32I	GATATC	1 cut(s)	2289
Eco47I	GGWCC	2 cut(s)	1933, 2035
Eco47III	AGCGCT	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	1226
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	7 cut(s)	324, 591, 1253, 2243, 2301, 2671, 2841
EcoRV	GATATC	1 cut(s)	2289
EcoT14I	CCWWGG	5 cut(s)	45, 470, 1762, 1884, 2415
EcoT38I	GRGCYC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	2300
EheI	GGCGCC	1 cut(s)	2300
ErhI	CCWWGG	5 cut(s)	45, 470, 1762, 1884, 2415
FalI	AAGNNNNNCTT	4 cut(s)	650, 682, 2124, 2156
FaqI	GGGAC	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	345
FblI	GTMKAC	4 cut(s)	439, 1614, 2715, 2787
Fnu4HI	GCNGC	9 cut(s)	42, 67, 70, 386, 452, 1270, 1280, 1385, 1791
FokI	GGATG	7 cut(s)	155, 266, 487, 689, 1259, 2462, 2573
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	9 cut(s)	42, 67, 70, 386, 452, 1270, 1280, 1385, 1791
FspBI	CTAG	6 cut(s)	164, 455, 773, 824, 1943, 1979
GlaI	GCGC	2 cut(s)	162, 2300
GluI	GCNGC	9 cut(s)	42, 67, 70, 386, 452, 1270, 1280, 1385, 1791
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	2 cut(s)	164, 2302
HaeIII	GGCC	7 cut(s)	44, 66, 591, 1341, 2146, 2766, 2841
HapII	CCGG	3 cut(s)	1057, 1813, 2719
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	2 cut(s)	163, 2301
Hin1I	GRCGYC	1 cut(s)	2299
Hin6I	GCGC	2 cut(s)	161, 2299
HinP1I	GCGC	2 cut(s)	161, 2299
HincII	GTYRAC	1 cut(s)	2788
HindII	GTYRAC	1 cut(s)	2788
HindIII	AAGCTT	2 cut(s)	1049, 2828
HpaII	CCGG	3 cut(s)	1057, 1813, 2719
HphI	GGTGA	5 cut(s)	361, 620, 899, 2554, 2564
Hpy166II	GTNNAC	9 cut(s)	440, 907, 923, 1105, 1615, 1926, 2444, 2716, 2788
Hpy188I	TCNGA	7 cut(s)	62, 1243, 1373, 1579, 1651, 2697, 2879
Hpy8I	GTNNAC	9 cut(s)	440, 907, 923, 1105, 1615, 1926, 2444, 2716, 2788
Hpy99I	CGWCG	2 cut(s)	86, 96
HpyAV	CCTTC	6 cut(s)	957, 1190, 1735, 1981, 2406, 2609
HpyCH4III	ACNGT	7 cut(s)	53, 96, 725, 1142, 1685, 1833, 2407
HpyCH4IV	ACGT	3 cut(s)	30, 84, 2432
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 14, 385, 1778, 1787, 1880, 1889
HpySE526I	ACGT	3 cut(s)	30, 84, 2432
Hsp92I	GRCGYC	1 cut(s)	2299
HspAI	GCGC	2 cut(s)	161, 2299
KasI	GGCGCC	1 cut(s)	2298
KroI	GCCGGC	1 cut(s)	1812
KroNI	GCCGGC	1 cut(s)	1814
KspI	CCGCGG	1 cut(s)	70
Kzo9I	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
LguI	GCTCTTC	1 cut(s)	2169
LmnI	GCTCC	5 cut(s)	205, 327, 384, 403, 1463
Lsp1109I	GCAGC	6 cut(s)	397, 438, 1281, 1291, 1396, 1802
LweI	GCATC	5 cut(s)	321, 711, 1394, 2350, 2551
MaeI	CTAG	6 cut(s)	164, 455, 773, 824, 1943, 1979
MaeII	ACGT	3 cut(s)	30, 84, 2432
MaeIII	GTNAC	7 cut(s)	31, 636, 1213, 1317, 1679, 2305, 2833
MalI	GATC	8 cut(s)	21, 462, 479, 771, 1710, 2412, 2658, 2670
MboI	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
MfeI	CAATTG	2 cut(s)	800, 1359
MflI	RGATCY	4 cut(s)	460, 769, 1708, 2410
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	1341
MluNI	TGGCCA	1 cut(s)	1341
Mly113I	GGCGCC	1 cut(s)	2299
MlyI	GAGTC	3 cut(s)	1259, 1556, 2390
MmeI	TCCRAC	2 cut(s)	183, 873
Mox20I	TGGCCA	1 cut(s)	1341
MroNI	GCCGGC	1 cut(s)	1812
MroXI	GAANNNNTTC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	1341
MseI	TTAA	3 cut(s)	669, 917, 2796
MslI	CAYNNNNRTG	2 cut(s)	418, 606
Msp20I	TGGCCA	1 cut(s)	1341
MspA1I	CMGCKG	2 cut(s)	69, 1772
MspI	CCGG	3 cut(s)	1057, 1813, 2719
MspR9I	CCNGG	8 cut(s)	326, 593, 1058, 1255, 2245, 2303, 2673, 2843
MunI	CAATTG	2 cut(s)	800, 1359
Mva1269I	GAATGC	2 cut(s)	329, 2165
MvaI	CCWGG	7 cut(s)	326, 593, 1255, 2245, 2303, 2673, 2843
MvnI	CGCG	2 cut(s)	69, 116
MwoI	GCNNNNNNNGC	7 cut(s)	10, 14, 385, 1778, 1787, 1880, 1889
NaeI	GCCGGC	1 cut(s)	1814
NarI	GGCGCC	1 cut(s)	2299
NciI	CCSGG	1 cut(s)	1058
NcoI	CCATGG	1 cut(s)	470
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
NgoMIV	GCCGGC	1 cut(s)	1812
NlaIV	GGNNCC	4 cut(s)	757, 1331, 2300, 2854
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	1213, 2305, 2833
NspI	RCATGY	1 cut(s)	2282
OliI	CACNNNNGTG	2 cut(s)	418, 606
PaeI	GCATGC	1 cut(s)	2282
PceI	AGGCCT	1 cut(s)	2841
PciSI	GCTCTTC	1 cut(s)	2169
PctI	GAATGC	2 cut(s)	329, 2165
PdiI	GCCGGC	1 cut(s)	1814
PdmI	GAANNNNTTC	1 cut(s)	975
PflFI	GACNNNGTC	1 cut(s)	2423
PflMI	CCANNNNNTGG	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	2671
PkrI	GCNGC	9 cut(s)	43, 68, 71, 387, 453, 1271, 1281, 1386, 1792
PleI	GAGTC	3 cut(s)	1258, 1556, 2389
PluTI	GGCGCC	1 cut(s)	2302
PpsI	GAGTC	3 cut(s)	1258, 1556, 2389
Ppu21I	YACGTR	1 cut(s)	2433
PshAI	GACNNNNGTC	1 cut(s)	2783
PsiI	TTATAA	1 cut(s)	1130
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	7 cut(s)	324, 591, 1253, 2243, 2301, 2671, 2841
PspGI	CCWGG	7 cut(s)	324, 591, 1253, 2243, 2301, 2671, 2841
PspN4I	GGNNCC	4 cut(s)	757, 1331, 2300, 2854
PspPI	GGNCC	4 cut(s)	589, 1933, 2035, 2145
PsrI	GAACNNNNNNTAC	2 cut(s)	1429, 1461
PstI	CTGCAG	2 cut(s)	387, 625
PstNI	CAGNNNCTG	1 cut(s)	2600
PsuI	RGATCY	4 cut(s)	460, 769, 1708, 2410
PsyI	GACNNNGTC	1 cut(s)	2423
PvuII	CAGCTG	1 cut(s)	1772
RsaI	GTAC	7 cut(s)	125, 193, 537, 944, 1438, 1925, 2435
RsaNI	GTAC	7 cut(s)	124, 192, 536, 943, 1437, 1924, 2434
RseI	CAYNNNNRTG	2 cut(s)	418, 606
SacI	GAGCTC	1 cut(s)	15
SacII	CCGCGG	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	2786
SapI	GCTCTTC	1 cut(s)	2169
SaqAI	TTAA	3 cut(s)	669, 917, 2796
SatI	GCNGC	9 cut(s)	42, 67, 70, 386, 452, 1270, 1280, 1385, 1791
Sau3AI	GATC	8 cut(s)	19, 460, 477, 769, 1708, 2410, 2656, 2668
Sau96I	GGNCC	4 cut(s)	589, 1933, 2035, 2145
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	3 cut(s)	1259, 1556, 2390
ScrFI	CCNGG	8 cut(s)	326, 593, 1058, 1255, 2245, 2303, 2673, 2843
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	5 cut(s)	321, 711, 1394, 2350, 2551
SfcI	CTRYAG	6 cut(s)	383, 621, 880, 1141, 2406, 2592
SfoI	GGCGCC	1 cut(s)	2300
Sfr303I	CCGCGG	1 cut(s)	70
SgrBI	CCGCGG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	1933, 2035
SmiMI	CAYNNNNRTG	2 cut(s)	418, 606
SmlI	CTYRAG	5 cut(s)	107, 641, 1591, 2774, 2858
SmoI	CTYRAG	5 cut(s)	107, 641, 1591, 2774, 2858
SnaBI	TACGTA	1 cut(s)	2433
SphI	GCATGC	1 cut(s)	2282
SseBI	AGGCCT	1 cut(s)	2841
SsiI	CCGC	6 cut(s)	25, 41, 67, 69, 1087, 1816
SspDI	GGCGCC	1 cut(s)	2298
SspI	AATATT	2 cut(s)	1392, 2226
SspMI	CTAG	6 cut(s)	164, 455, 773, 824, 1943, 1979
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	2841
StyD4I	CCNGG	8 cut(s)	324, 591, 1056, 1253, 2243, 2301, 2671, 2841
StyI	CCWWGG	5 cut(s)	45, 470, 1762, 1884, 2415
TaaI	ACNGT	7 cut(s)	53, 96, 725, 1142, 1685, 1833, 2407
TaiI	ACGT	3 cut(s)	33, 87, 2435
TaqI	TCGA	5 cut(s)	81, 157, 598, 2732, 2787
TatI	WGTACW	2 cut(s)	191, 1436
TauI	GCSGC	3 cut(s)	44, 69, 72
Tru1I	TTAA	3 cut(s)	669, 917, 2796
Tru9I	TTAA	3 cut(s)	669, 917, 2796
TscAI	CASTG	5 cut(s)	134, 610, 1495, 1935, 2542
TseFI	GTSAC	3 cut(s)	1213, 2305, 2833
TseI	GCWGC	6 cut(s)	385, 451, 1269, 1279, 1384, 1790
Tsp45I	GTSAC	3 cut(s)	1213, 2305, 2833
TspGWI	ACGGA	3 cut(s)	930, 1322, 2701
TspRI	CASTG	5 cut(s)	134, 610, 1495, 1935, 2542
Tth111I	GACNNNGTC	1 cut(s)	2423
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	1933, 2035
XapI	RAATTY	8 cut(s)	290, 959, 994, 1037, 1061, 1366, 1669, 1804
XbaI	TCTAGA	3 cut(s)	772, 823, 1978
XceI	RCATGY	1 cut(s)	2282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmiI	GTMKAC	4 cut(s)	439, 1614, 2715, 2787
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	6 cut(s)	164, 455, 773, 824, 1943, 1979
ZrmI	AGTACT	1 cut(s)	1438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.