Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000111.1

Orthogroup ID

OG0007756

Physical Location & Seq

Genomic Coordinates Reverse (-)

53244 .. 55902

Gene Structure 2659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atggcttcctcacactgctttgctccttttgtatttctactcctccttgttggatgctccggaaggccattatatccacttccaagtaaagaggccaatagatatagacagcctctacaaacttctagaccatacaacattgcacatcgaggatcaaatggagagattcctgaagaaactgctgcagcatacatgagagcaattgaagagggtgcagacttcattgaaacagatattctatcttctaaagatgatcgcaaacggacctatgacgttcaaggggtcaacaccactggttttttcactgttgattttacacttgaagaactgaagacattacgagtgaagcagagatacccatttcgtgatcaacaatataatggaaaatttcctattattacttttgaggagtttatttcaatcgcactggatgcacccagagttgttggcatatatccggagattaagaatcctgtattgatcaaccaacatgtaaagtggtcaaatggtaagagattcgaggacaagtttgtggagacacttaaaaagtacggatacaagggttcatatatgtcgaaagattggctgaaacaacctgcatttatccagtcatttgctccaacttcacttgtttatgtatcaaatctgacagacttgcccaagatctttttgattgacgatatcacaattcctactcaagacactaatcagtcgtattgggaaattacttcagacagctaccttagctacattaaggagtatgtggtaggcattggaccttggaaggatactgtggttcctgtagtaaataattatttgcaaacacctacagacctggtccccatggctcatgcacataacctacaggtgcacccctatacattcaggaatgataactcctccctgcactttgactttcgtcaagatccgtatcaagagtacgagtactggcttaataagataggcgttgatggactctttacagacttcacaggcagcctgcataattatcaagaatggacctcttttaatcaaagtgataacagtaatgcgtcaaagctattgcataaaatagcattgctggtctcttcctatacaaaggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

368

Amino Acids

42.44

Weight (kDa)

6.01

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	49 - 332	1.4e-44	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74210 AT5G08030 AT5G08030
fragaria_vesca	FvH4_5g13770 FvH4_5g13770 FvH4_5g13770
malus_domestica	MD06G1225600.v1.1 MD14G1212500.v1.1
prunus_persica	Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1
pyrus_communis	pycom06g18010
rosa_chinensis	RchiOBHm_Chr7g0183171
rosa_laevigata	RLG00000005070
rosa_multiflora	Rmu_ssc0000111.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270690
rosa_rugosa	Rorug06G0454600 Rorug06G0454600
rosa_samantha	Rh7AG056900 Rh7BG056600 Rh7CG057600 Rh7CG057700 Rh7DG056500
rosa_wichuraiana	Rw7G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccIII	TCCGGA	2 cut(s)	59, 457
AclWI	GGATC	2 cut(s)	160, 920
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	3 cut(s)	192, 350, 714
AfaI	GTAC	3 cut(s)	551, 941, 947
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	206, 227, 278, 323, 420
AjnI	CCWGG	1 cut(s)	834
AluBI	AGCT	3 cut(s)	738, 747, 1060
AluI	AGCT	3 cut(s)	738, 747, 1060
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	2 cut(s)	530, 1090
Alw44I	GTGCAC	1 cut(s)	869
AlwI	GGATC	2 cut(s)	160, 920
Aor13HI	TCCGGA	2 cut(s)	59, 457
AoxI	GGCC	2 cut(s)	65, 93
ApaLI	GTGCAC	1 cut(s)	869
ApeKI	GCWGC	3 cut(s)	182, 185, 996
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	4 cut(s)	264, 776, 838, 1020
AvaII	GGWCC	4 cut(s)	264, 776, 838, 1020
BaeGI	GKGCMC	1 cut(s)	873
BaeI	ACNNNNGTAYC	4 cut(s)	547, 580, 780, 813
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	873
BbvI	GCAGC	3 cut(s)	169, 197, 1008
BccI	CCATC	1 cut(s)	965
BciT130I	CCWGG	1 cut(s)	836
BciVI	GTATCC	2 cut(s)	548, 781
BclI	TGATCA	2 cut(s)	367, 480
BcoDI	GTCTC	2 cut(s)	530, 1090
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	4 cut(s)	183, 801, 828, 863
BfuAI	ACCTGC	1 cut(s)	604
BfuI	GTATCC	2 cut(s)	548, 781
BglII	AGATCT	1 cut(s)	663
BisI	GCNGC	3 cut(s)	183, 186, 997
BlsI	GCNGC	3 cut(s)	184, 187, 998
BmcAI	AGTACT	1 cut(s)	947
Bme1390I	CCNGG	1 cut(s)	836
Bme18I	GGWCC	4 cut(s)	264, 776, 838, 1020
BmgT120I	GGNCC	4 cut(s)	264, 776, 838, 1020
BmiI	GGNNCC	2 cut(s)	798, 840
BmrFI	CCNGG	1 cut(s)	836
BmsI	GCATC	2 cut(s)	44, 421
BoxI	GACNNNNGTC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	681
BsaBI	GATNNNNATC	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	1090
BsaJI	CCNNGG	2 cut(s)	779, 843
BsaWI	WCCGGW	2 cut(s)	59, 457
Bse1I	ACTGG	4 cut(s)	298, 432, 607, 953
Bse3DI	GCAATG	2 cut(s)	138, 1076
Bse8I	GATNNNNATC	1 cut(s)	930
BseAI	TCCGGA	2 cut(s)	59, 457
BseBI	CCWGG	1 cut(s)	836
BseDI	CCNNGG	2 cut(s)	779, 843
BseGI	GGATG	2 cut(s)	59, 436
BseJI	GATNNNNATC	1 cut(s)	930
BseMI	GCAATG	2 cut(s)	138, 1076
BseNI	ACTGG	4 cut(s)	298, 432, 607, 953
BseRI	GAGGAG	3 cut(s)	32, 422, 889
BseSI	GKGCMC	1 cut(s)	873
BseXI	GCAGC	3 cut(s)	169, 197, 1008
BsgI	GTGCAG	2 cut(s)	234, 890
BshFI	GGCC	2 cut(s)	67, 95
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	2 cut(s)	60, 458
BslFI	GGGAC	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	530, 1090
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	67, 95
Bso31I	GGTCTC	1 cut(s)	1090
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp13I	TCCGGA	2 cut(s)	59, 457
Bsp143I	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
Bsp19I	CCATGG	1 cut(s)	843
BspANI	GGCC	2 cut(s)	67, 95
BspEI	TCCGGA	2 cut(s)	59, 457
BspLI	GGNNCC	2 cut(s)	798, 840
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	160, 920
BspTNI	GGTCTC	1 cut(s)	1090
BsrDI	GCAATG	2 cut(s)	138, 1076
BsrI	ACTGG	4 cut(s)	298, 432, 607, 953
BssECI	CCNNGG	2 cut(s)	779, 843
BssMI	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
BssT1I	CCWWGG	2 cut(s)	779, 843
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	3 cut(s)	307, 793, 1046
Bst6I	CTCTTC	2 cut(s)	201, 1093
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	1001
BstDEI	CTNAG	1 cut(s)	743
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	59, 436
BstKTI	GATC	6 cut(s)	155, 256, 370, 483, 666, 928
BstMAI	GTCTC	2 cut(s)	530, 1090
BstMBI	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 744
BstNI	CCWGG	1 cut(s)	836
BstNSI	RCATGY	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSCI	CCNGG	1 cut(s)	834
BstSFI	CTRYAG	4 cut(s)	183, 801, 828, 863
BstSLI	GKGCMC	1 cut(s)	873
BstV1I	GCAGC	3 cut(s)	169, 197, 1008
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	663, 925
BstYI	RGATCY	2 cut(s)	663, 925
BsuI	GTATCC	2 cut(s)	548, 781
BsuRI	GGCC	2 cut(s)	67, 95
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	2 cut(s)	59, 436
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	4 cut(s)	13, 291, 303, 425
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	1001
Cfr13I	GGNCC	4 cut(s)	264, 776, 838, 1020
CseI	GACGC	1 cut(s)	1041
CsiI	ACCWGGT	1 cut(s)	834
Csp6I	GTAC	3 cut(s)	550, 940, 946
CviAII	CATG	5 cut(s)	193, 491, 844, 851, 1104
CviQI	GTAC	3 cut(s)	550, 940, 946
DdeI	CTNAG	1 cut(s)	743
DpnI	GATC	6 cut(s)	154, 255, 369, 482, 665, 927
DpnII	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
Eam1104I	CTCTTC	2 cut(s)	201, 1093
EarI	CTCTTC	2 cut(s)	201, 1093
Eco130I	CCWWGG	2 cut(s)	779, 843
Eco31I	GGTCTC	1 cut(s)	1090
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	4 cut(s)	264, 776, 838, 1020
Eco57I	CTGAAG	3 cut(s)	192, 350, 714
EcoRII	CCWGG	1 cut(s)	834
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	779, 843
ErhI	CCWWGG	2 cut(s)	779, 843
FaeI	CATG	5 cut(s)	196, 494, 847, 854, 1107
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	5 cut(s)	192, 490, 843, 850, 1103
FbaI	TGATCA	2 cut(s)	367, 480
Fnu4HI	GCNGC	3 cut(s)	183, 186, 997
FokI	GGATG	2 cut(s)	66, 443
Fsp4HI	GCNGC	3 cut(s)	183, 186, 997
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	183, 186, 997
HaeIII	GGCC	2 cut(s)	67, 95
HapII	CCGG	2 cut(s)	60, 458
HgaI	GACGC	1 cut(s)	1041
Hin1II	CATG	5 cut(s)	196, 494, 847, 854, 1107
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	166, 469, 516, 975
HpaII	CCGG	2 cut(s)	60, 458
Hpy166II	GTNNAC	2 cut(s)	286, 871
Hpy188I	TCNGA	2 cut(s)	648, 733
Hpy8I	GTNNAC	2 cut(s)	286, 871
HpyAV	CCTTC	2 cut(s)	57, 778
HpyCH4III	ACNGT	3 cut(s)	307, 793, 1046
HpyCH4IV	ACGT	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 744
HpyF3I	CTNAG	1 cut(s)	743
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	196, 494, 847, 854, 1107
Kpn2I	TCCGGA	2 cut(s)	59, 457
Ksp22I	TGATCA	2 cut(s)	367, 480
Kzo9I	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
LmnI	GCTCC	3 cut(s)	28, 62, 622
Lsp1109I	GCAGC	3 cut(s)	169, 197, 1008
LweI	GCATC	2 cut(s)	44, 421
MabI	ACCWGGT	1 cut(s)	834
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	273
MalI	GATC	6 cut(s)	154, 255, 369, 482, 665, 927
MboI	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
MboII	GAAGA	6 cut(s)	185, 218, 234, 335, 343, 1080
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	663, 925
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	6 cut(s)	201, 386, 687, 723, 811, 1006
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	2 cut(s)	31, 644
MroI	TCCGGA	2 cut(s)	59, 457
MseI	TTAA	5 cut(s)	465, 543, 753, 954, 1029
MspI	CCGG	2 cut(s)	60, 458
MspR9I	CCNGG	1 cut(s)	836
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	836
MwoI	GCNNNNNNNGC	2 cut(s)	431, 744
NcoI	CCATGG	1 cut(s)	843
NdeII	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
NlaIII	CATG	5 cut(s)	196, 494, 847, 854, 1107
NlaIV	GGNNCC	2 cut(s)	798, 840
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	166, 469, 516
PflFI	GACNNNGTC	1 cut(s)	836
PkrI	GCNGC	3 cut(s)	184, 187, 998
PleI	GAGTC	1 cut(s)	969
PpsI	GAGTC	1 cut(s)	969
PscI	ACATGT	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	834
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	2 cut(s)	798, 840
PspPI	GGNCC	4 cut(s)	264, 776, 838, 1020
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	663, 925
PsyI	GACNNNGTC	1 cut(s)	836
RsaI	GTAC	3 cut(s)	551, 941, 947
RsaNI	GTAC	3 cut(s)	550, 940, 946
SaqAI	TTAA	5 cut(s)	465, 543, 753, 954, 1029
SatI	GCNGC	3 cut(s)	183, 186, 997
Sau3AI	GATC	6 cut(s)	152, 253, 367, 480, 663, 925
Sau96I	GGNCC	4 cut(s)	264, 776, 838, 1020
ScaI	AGTACT	1 cut(s)	947
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	1 cut(s)	836
SduI	GDGCHC	1 cut(s)	873
SexAI	ACCWGGT	1 cut(s)	834
SfaNI	GCATC	2 cut(s)	44, 421
SfcI	CTRYAG	4 cut(s)	183, 801, 828, 863
SinI	GGWCC	4 cut(s)	264, 776, 838, 1020
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
Sse9I	AATT	6 cut(s)	201, 386, 687, 723, 811, 1006
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	834
StyI	CCWWGG	2 cut(s)	779, 843
TaaI	ACNGT	3 cut(s)	307, 793, 1046
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	148, 519, 575
TasI	AATT	6 cut(s)	201, 386, 687, 723, 811, 1006
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	3 cut(s)	166, 469, 516
Tru1I	TTAA	5 cut(s)	465, 543, 753, 954, 1029
Tru9I	TTAA	5 cut(s)	465, 543, 753, 954, 1029
TscAI	CASTG	4 cut(s)	20, 298, 310, 432
TseI	GCWGC	3 cut(s)	182, 185, 996
TspDTI	ATGAA	2 cut(s)	211, 555
TspGWI	ACGGA	3 cut(s)	277, 567, 918
TspRI	CASTG	4 cut(s)	20, 298, 310, 432
Tth111I	GACNNNGTC	1 cut(s)	836
VneI	GTGCAC	1 cut(s)	869
VpaK11BI	GGWCC	4 cut(s)	264, 776, 838, 1020
XapI	RAATTY	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.