Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0012582

Physical Location & Seq

Genomic Coordinates Reverse (-)

227738 .. 230171

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggctcagacgactccgaatcatacacagaccgtttctgggtgggcagctcacgattcctccggcgagattacccctttcatcttcaagcgaagagaaaacgggatcaacgatgtcacgataaagatattatactgcgggatatgccacactgatctccaccaagctaggaatgactggggcatcaccatgtatcctgttgtccctggtcatgagattactggggtggtcacgaaagttgggagtaacgtgaagaacttctcggtcggagatagagttggagtcgggtgcttggcggcgacgtgtttggagtgcgatttctgcaaggaatcccaggagaactactgcgaggaccttcaatttacctacaatggcatcttctgggatggtagtatcacctatggtggctactccaaaatgttggttgctgatcataggtacgtggtgcgcataccagaaaacctaccaatggatgctgcagcgccgctattgtgtgccggagtgactgtgttcagccccttgagagaccacgacttgcacaaaacaccggggaagaagataggagtcgtcggcctcggaggtctcggacacgtggcggtgaaattcgggaaggcctttggtcatcacgtcaccgtcatcagcacctctccgtccaaagagaaagaggccaaagatcacttgggtgcagacgatttcatagtcagcactgaagaccaacaaatgcagaaaggaaagaggagccttgacttcatattaaacacggtgtcagctaagcactgtctcggaccactcttagagttgctcaaagtgaacgggaccatggtggttgtgggtgcacctgaccagccctttacgttgccttctttccctatgatatttgggaagagggcagtgaagggtagtgtgatcggaggaatggatgagacaagggagatgatggaactctgcggcaaacacaacattacgtgcgacattgagcttacatcgccagacaaaattaaccaagccttggaccgcgtcgcaaagaatgatgttaggtatcgctttgtcatcgacattgctaatgcccccgctgctactgttgatgatgatcaaatctgttccaatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

370

Amino Acids

40.34

Weight (kDa)

6.05

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38060 FvH4_2g38060
malus_domestica	MD08G1009200.v1.1 MD15G1008100.v1.1
prunus_persica	Prupe.1G360900_v2.0.a1 Prupe.1G360900_v2.0.a1 Prupe.1G360900_v2.0.a1
pyrus_communis	pycom08g00740 pycom15g00650
rosa_chinensis	RchiOBHm_Chr6g0303501
rosa_laevigata	RLG00000011079
rosa_multiflora	Rmu_ssc0000114.1_g000041
rosa_roxburghii	Rroxscaffold_7G00164690
rosa_rugosa	Rorug06G0322000 Rorug06G0322000
rosa_samantha	Rh6AG436300 Rh6BG467200 Rh6DG435000
rosa_wichuraiana	Rw6G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AccII	CGCG	1 cut(s)	1017
AciI	CCGC	7 cut(s)	138, 296, 485, 596, 948, 1015, 1071
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	729
AcvI	CACGTG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	3 cut(s)	39, 469, 1009
AflIII	ACRYGT	2 cut(s)	302, 589
AgsI	TTSAA	2 cut(s)	88, 359
AjiI	CACGTC	2 cut(s)	303, 628
AjnI	CCWGG	2 cut(s)	205, 333
AleI	CACNNNNGTG	1 cut(s)	681
AluBI	AGCT	4 cut(s)	50, 167, 770, 979
AluI	AGCT	4 cut(s)	50, 167, 770, 979
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	4 cut(s)	519, 587, 785, 917
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	3 cut(s)	571, 612, 666
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	4 cut(s)	47, 476, 479, 1073
ApoI	RAATTY	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	450, 484
AspS9I	GGNCC	4 cut(s)	352, 785, 816, 1012
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	4 cut(s)	178, 388, 610, 622
AvaII	GGWCC	4 cut(s)	352, 785, 816, 1012
BaeGI	GKGCMC	1 cut(s)	838
BbrPI	CACGTG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	4 cut(s)	59, 463, 491, 1060
BccI	CCATC	2 cut(s)	380, 931
BciT130I	CCWGG	2 cut(s)	207, 335
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	2 cut(s)	430, 1090
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	4 cut(s)	519, 587, 785, 917
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	7 cut(s)	48, 297, 477, 480, 485, 949, 1074
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	7 cut(s)	49, 298, 478, 481, 486, 950, 1075
Bme1390I	CCNGG	3 cut(s)	207, 335, 549
Bme18I	GGWCC	4 cut(s)	352, 785, 816, 1012
BmgBI	CACGTC	2 cut(s)	303, 628
BmgT120I	GGNCC	4 cut(s)	352, 785, 816, 1012
BmiI	GGNNCC	2 cut(s)	740, 817
BmrFI	CCNGG	3 cut(s)	207, 335, 549
BmrI	ACTGGG	2 cut(s)	187, 231
BmsI	GCATC	3 cut(s)	192, 384, 463
BmuI	ACTGGG	2 cut(s)	187, 231
BpiI	GAAGAC	1 cut(s)	717
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	549
BsaAI	YACGTR	3 cut(s)	442, 592, 966
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaI	GGTCTC	2 cut(s)	519, 587
BsaJI	CCNNGG	6 cut(s)	205, 333, 548, 574, 819, 1008
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 261, 291, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 469, 1009
Bse1I	ACTGG	2 cut(s)	182, 226
Bse3DI	GCAATG	1 cut(s)	1056
Bse8I	GATNNNNATC	1 cut(s)	1089
BseBI	CCWGG	2 cut(s)	207, 335
BseDI	CCNNGG	6 cut(s)	205, 333, 548, 574, 819, 1008
BseGI	GGATG	3 cut(s)	391, 478, 925
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	3 cut(s)	39, 469, 1009
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	182, 226
BseRI	GAGGAG	1 cut(s)	751
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	4 cut(s)	59, 463, 491, 1060
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	1017
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	573, 614, 668
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	838
BsiSI	CCGG	3 cut(s)	63, 498, 548
BslFI	GGGAC	2 cut(s)	188, 829
BslI	CCNNNNNNNGG	3 cut(s)	39, 469, 1009
BsmAI	GTCTC	4 cut(s)	519, 587, 785, 917
BsmFI	GGGAC	2 cut(s)	188, 829
BsnI	GGCC	3 cut(s)	573, 614, 668
Bso31I	GGTCTC	2 cut(s)	519, 587
Bsp1286I	GDGCHC	1 cut(s)	838
Bsp143I	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
Bsp1720I	GCTNAGC	1 cut(s)	771
Bsp19I	CCATGG	1 cut(s)	819
BspACI	CCGC	7 cut(s)	138, 296, 485, 596, 948, 1015, 1071
BspANI	GGCC	3 cut(s)	573, 614, 668
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	1017
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	740, 817
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	1 cut(s)	113
BspTNI	GGTCTC	2 cut(s)	519, 587
BsrDI	GCAATG	1 cut(s)	1056
BsrI	ACTGG	2 cut(s)	182, 226
BssECI	CCNNGG	6 cut(s)	205, 333, 548, 574, 819, 1008
BssMI	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
BssT1I	CCWWGG	2 cut(s)	819, 1008
Bst2UI	CCWGG	2 cut(s)	207, 335
Bst4CI	ACNGT	6 cut(s)	34, 508, 634, 763, 779, 1081
Bst6I	CTCTTC	2 cut(s)	88, 878
BstBAI	YACGTR	3 cut(s)	442, 592, 966
BstDEI	CTNAG	3 cut(s)	6, 771, 793
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	3 cut(s)	391, 478, 925
BstFNI	CGCG	1 cut(s)	1017
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	450, 484
BstKTI	GATC	6 cut(s)	108, 157, 433, 676, 909, 1093
BstMAI	GTCTC	4 cut(s)	519, 587, 785, 917
BstMBI	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 321, 985, 1073
BstNI	CCWGG	2 cut(s)	207, 335
BstSCI	CCNGG	3 cut(s)	205, 333, 547
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	838
BstUI	CGCG	1 cut(s)	1017
BstV1I	GCAGC	4 cut(s)	59, 463, 491, 1060
BstV2I	GAAGAC	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	573, 614, 668
BtgI	CCRYGG	1 cut(s)	819
BtgZI	GCGATG	1 cut(s)	969
BtrI	CACGTC	2 cut(s)	303, 628
BtsCI	GGATG	3 cut(s)	391, 478, 925
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	4 cut(s)	150, 705, 775, 897
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	2 cut(s)	450, 484
Cfr13I	GGNCC	4 cut(s)	352, 785, 816, 1012
CseI	GACGC	1 cut(s)	1006
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	3 cut(s)	190, 212, 820
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	6, 771, 793
DpnI	GATC	6 cut(s)	107, 156, 432, 675, 908, 1092
DpnII	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
Eam1104I	CTCTTC	2 cut(s)	88, 878
EarI	CTCTTC	2 cut(s)	88, 878
Eco130I	CCWWGG	2 cut(s)	819, 1008
Eco147I	AGGCCT	1 cut(s)	614
Eco31I	GGTCTC	2 cut(s)	519, 587
Eco47I	GGWCC	4 cut(s)	352, 785, 816, 1012
Eco57I	CTGAAG	1 cut(s)	729
Eco72I	CACGTG	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	205, 333
EcoT14I	CCWWGG	2 cut(s)	819, 1008
ErhI	CCWWGG	2 cut(s)	819, 1008
FaeI	CATG	3 cut(s)	193, 215, 823
FaqI	GGGAC	2 cut(s)	188, 829
FatI	CATG	3 cut(s)	189, 211, 819
FauI	CCCGC	2 cut(s)	131, 1078
FbaI	TGATCA	2 cut(s)	430, 1090
Fnu4HI	GCNGC	7 cut(s)	48, 297, 477, 480, 485, 949, 1074
FokI	GGATG	3 cut(s)	398, 485, 932
Fsp4HI	GCNGC	7 cut(s)	48, 297, 477, 480, 485, 949, 1074
FspAI	RTGCGCAY	1 cut(s)	449
FspBI	CTAG	1 cut(s)	168
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	2 cut(s)	449, 483
GluI	GCNGC	7 cut(s)	48, 297, 477, 480, 485, 949, 1074
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	573, 614, 668
HapII	CCGG	3 cut(s)	63, 498, 548
HgaI	GACGC	1 cut(s)	1006
HhaI	GCGC	2 cut(s)	450, 484
Hin1II	CATG	3 cut(s)	193, 215, 823
Hin6I	GCGC	2 cut(s)	448, 482
HinP1I	GCGC	2 cut(s)	448, 482
HinfI	GANTC	6 cut(s)	13, 19, 56, 282, 329, 564
HpaII	CCGG	3 cut(s)	63, 498, 548
HphI	GGTGA	4 cut(s)	178, 388, 610, 622
Hpy166II	GTNNAC	2 cut(s)	811, 836
Hpy188I	TCNGA	7 cut(s)	9, 18, 269, 578, 587, 785, 911
Hpy188III	TCNNGA	5 cut(s)	53, 118, 212, 232, 607
Hpy8I	GTNNAC	2 cut(s)	811, 836
Hpy99I	CGWCG	3 cut(s)	304, 572, 1022
HpyAV	CCTTC	4 cut(s)	365, 604, 870, 889
HpyCH4III	ACNGT	6 cut(s)	34, 508, 634, 763, 779, 1081
HpyCH4IV	ACGT	7 cut(s)	249, 302, 441, 591, 627, 854, 965
HpyCH4V	TGCA	6 cut(s)	324, 479, 538, 686, 724, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 321, 985, 1073
HpyF3I	CTNAG	3 cut(s)	6, 771, 793
HpySE526I	ACGT	7 cut(s)	249, 302, 441, 591, 627, 854, 965
Hsp92II	CATG	3 cut(s)	193, 215, 823
HspAI	GCGC	2 cut(s)	448, 482
Ksp22I	TGATCA	2 cut(s)	430, 1090
Kzo9I	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	4 cut(s)	59, 463, 491, 1060
LweI	GCATC	3 cut(s)	192, 384, 463
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	7 cut(s)	249, 302, 441, 591, 627, 854, 965
MaeIII	GTNAC	5 cut(s)	115, 229, 245, 502, 628
MalI	GATC	6 cut(s)	107, 156, 432, 675, 908, 1092
MboI	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
MboII	GAAGA	8 cut(s)	76, 105, 265, 370, 565, 568, 722, 895
MhlI	GDGCHC	1 cut(s)	838
MluCI	AATT	3 cut(s)	359, 602, 996
MlyI	GAGTC	3 cut(s)	7, 291, 573
MmeI	TCCRAC	2 cut(s)	247, 259
MnlI	CCTC	9 cut(s)	70, 343, 572, 584, 655, 658, 729, 879, 905
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	755, 999
MslI	CAYNNNNRTG	2 cut(s)	188, 681
MspA1I	CMGCKG	1 cut(s)	1073
MspI	CCGG	3 cut(s)	63, 498, 548
MspR9I	CCNGG	3 cut(s)	207, 335, 549
MvaI	CCWGG	2 cut(s)	207, 335
MvnI	CGCG	1 cut(s)	1017
MwoI	GCNNNNNNNGC	4 cut(s)	144, 321, 985, 1073
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	1 cut(s)	819
NdeII	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
NlaIII	CATG	3 cut(s)	193, 215, 823
NlaIV	GGNNCC	2 cut(s)	740, 817
NmuCI	GTSAC	4 cut(s)	115, 229, 502, 628
NsbI	TGCGCA	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	681
PagI	TCATGA	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	19, 56, 329
PflFI	GACNNNGTC	1 cut(s)	1016
PflMI	CCANNNNNTGG	1 cut(s)	1009
PkrI	GCNGC	7 cut(s)	49, 298, 478, 481, 486, 950, 1075
PleI	GAGTC	3 cut(s)	7, 290, 572
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
PpsI	GAGTC	3 cut(s)	7, 290, 572
Ppu21I	YACGTR	3 cut(s)	442, 592, 966
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	205, 333
PspCI	CACGTG	1 cut(s)	592
PspGI	CCWGG	2 cut(s)	205, 333
PspN4I	GGNNCC	2 cut(s)	740, 817
PspPI	GGNCC	4 cut(s)	352, 785, 816, 1012
PspPPI	RGGWCCY	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	1016
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	2 cut(s)	188, 681
SaqAI	TTAA	2 cut(s)	755, 999
SatI	GCNGC	7 cut(s)	48, 297, 477, 480, 485, 949, 1074
Sau3AI	GATC	6 cut(s)	105, 154, 430, 673, 906, 1090
Sau96I	GGNCC	4 cut(s)	352, 785, 816, 1012
SchI	GAGTC	3 cut(s)	7, 291, 573
ScrFI	CCNGG	3 cut(s)	207, 335, 549
SduI	GDGCHC	1 cut(s)	838
SfaNI	GCATC	3 cut(s)	192, 384, 463
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	4 cut(s)	352, 785, 816, 1012
SmiMI	CAYNNNNRTG	2 cut(s)	188, 681
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	359, 602, 996
SseBI	AGGCCT	1 cut(s)	614
SsiI	CCGC	7 cut(s)	138, 296, 485, 596, 948, 1015, 1071
SspMI	CTAG	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	205, 333, 547
StyI	CCWWGG	2 cut(s)	819, 1008
TaaI	ACNGT	6 cut(s)	34, 508, 634, 763, 779, 1081
TaiI	ACGT	7 cut(s)	252, 305, 444, 594, 630, 857, 968
TaqI	TCGA	1 cut(s)	1053
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	359, 602, 996
TauI	GCSGC	3 cut(s)	299, 487, 951
TfiI	GAWTC	3 cut(s)	19, 56, 329
Tru1I	TTAA	2 cut(s)	755, 999
Tru9I	TTAA	2 cut(s)	755, 999
TscAI	CASTG	4 cut(s)	157, 712, 782, 897
TseFI	GTSAC	4 cut(s)	115, 229, 502, 628
TseI	GCWGC	4 cut(s)	47, 476, 479, 1073
Tsp45I	GTSAC	4 cut(s)	115, 229, 502, 628
TspDTI	ATGAA	3 cut(s)	70, 685, 739
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	4 cut(s)	157, 712, 782, 897
Tth111I	GACNNNGTC	1 cut(s)	1016
Van91I	CCANNNNNTGG	1 cut(s)	1009
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	4 cut(s)	352, 785, 816, 1012
XapI	RAATTY	1 cut(s)	602
XcmI	CCANNNNNNNNNTGG	2 cut(s)	676, 826
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.