Rh6BG467200

cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012582
Physical Location & Seq
Reverse (-)
67549212 .. 67552064
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG467200.1

Sequence Viewer

Length: 645 bp
ATGGATGCTGCAGCGCCGCTATTGTGTGCCGGAGTGACTGTGTTCAGCCCCTTGAGAGACCACGACTTGCACAAAACACCGGGGAAGAAGATAGGCGTCGTCGGCCTCGGAGGTCTCGGACACGTGGCGGTGAAATTCGGGAAGGCCTTTGGTCATCACGTCACCGTCATCAGCACCTCTCCGTCCAAAGAGAAAGAGGCCAAAGATCACTTGGGTGCAGACGATTTCATAGTCAGCACTGACGACCAACAAATGCAGAAAGGAAAGAGGAGCCTTGACTTCATATTAAACACGGTGTCAGCTAAGCACTGTCTCGGACCACTCTTAGAGTTGCTCAAAGTGAACGGGACCATGGTGGTTGTGGGTGCACCTGACCAGCCCTTTACGTTGCCTTCCTTCCCTATGATATTTGGGAAGAGGGCAGTGAAGGGTAGTGTGATCGGAGGAATGGATGAGACGAGGGAGATGATGGAACTTTGCGGCAAACACAACATTACGTGCGACATTGAGATTACATCGCCAGACAAAATTAACCAAGCCTTGGACCGCGTCGCAAAGAATGACGTTAGGTATCGCTTTGTCATCGACATTGCTAATGCCCCCGCTGCTACTGTTGATGATGATCAAATCTGTTCCAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

214

Amino Acids

22.99

Weight (kDa)

6.43

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 38 - 159 6.9e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 541
AccII CGCG 1 cut(s) 549
AciI CCGC 5 cut(s) 17, 128, 480, 547, 603
AcsI RAATTY 1 cut(s) 134
AcvI CACGTG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 1 cut(s) 121
AjiI CACGTC 1 cut(s) 160
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 4 cut(s) 51, 119, 317, 449
Alw44I GTGCAC 1 cut(s) 366
AoxI GGCC 3 cut(s) 103, 144, 198
ApaLI GTGCAC 1 cut(s) 366
ApeKI GCWGC 3 cut(s) 8, 11, 605
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 317, 348, 544
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 142, 154
AvaII GGWCC 3 cut(s) 317, 348, 544
BaeGI GKGCMC 1 cut(s) 370
BbrPI CACGTG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 23, 592
BccI CCATC 1 cut(s) 463
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 4 cut(s) 51, 119, 317, 449
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 5 cut(s) 9, 12, 17, 481, 606
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 5 cut(s) 10, 13, 18, 482, 607
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 3 cut(s) 317, 348, 544
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 3 cut(s) 317, 348, 544
BmiI GGNNCC 2 cut(s) 272, 349
BmrFI CCNGG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 81
BsaAI YACGTR 2 cut(s) 124, 498
BsaBI GATNNNNATC 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 51, 119
BsaJI CCNNGG 4 cut(s) 80, 106, 351, 540
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 588
Bse8I GATNNNNATC 1 cut(s) 621
BseDI CCNNGG 4 cut(s) 80, 106, 351, 540
BseGI GGATG 2 cut(s) 10, 457
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMI GCAATG 1 cut(s) 588
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 2 cut(s) 23, 592
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 3 cut(s) 105, 146, 200
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 2 cut(s) 30, 80
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 4 cut(s) 51, 119, 317, 449
BsmBI CGTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 3 cut(s) 105, 146, 200
Bso31I GGTCTC 2 cut(s) 51, 119
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 205, 438, 622
Bsp1720I GCTNAGC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 5 cut(s) 17, 128, 480, 547, 603
BspANI GGCC 3 cut(s) 105, 146, 200
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 272, 349
BspMAI CTGCAG 1 cut(s) 13
BspTNI GGTCTC 2 cut(s) 51, 119
BsrDI GCAATG 1 cut(s) 588
BssECI CCNNGG 4 cut(s) 80, 106, 351, 540
BssMI GATC 3 cut(s) 205, 438, 622
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 351, 540
Bst4CI ACNGT 5 cut(s) 40, 166, 295, 311, 613
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 2 cut(s) 124, 498
BstDEI CTNAG 2 cut(s) 303, 325
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 10, 457
BstFNI CGCG 1 cut(s) 549
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 208, 441, 625
BstMAI GTCTC 4 cut(s) 51, 119, 317, 449
BstMBI GATC 3 cut(s) 205, 438, 622
BstMWI GCNNNNNNNGC 2 cut(s) 102, 605
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 23, 592
BsuRI GGCC 3 cut(s) 105, 146, 200
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 10, 457
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 237, 307, 429
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 317, 348, 544
CseI GACGC 2 cut(s) 85, 538
CviAII CATG 1 cut(s) 352
CviJI RGCY 8 cut(s) 48, 105, 146, 200, 273, 302, 379, 539
CviKI_1 RGCY 8 cut(s) 48, 105, 146, 200, 273, 302, 379, 539
DdeI CTNAG 2 cut(s) 303, 325
DpnI GATC 3 cut(s) 207, 440, 624
DpnII GATC 3 cut(s) 205, 438, 622
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 351, 540
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 2 cut(s) 51, 119
Eco47I GGWCC 3 cut(s) 317, 348, 544
Eco72I CACGTG 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 351, 540
ErhI CCWWGG 2 cut(s) 351, 540
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 1 cut(s) 355
FaiI YATR 4 cut(s) 230, 284, 353, 404
FaqI GGGAC 1 cut(s) 361
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 610
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 5 cut(s) 9, 12, 17, 481, 606
FokI GGATG 2 cut(s) 17, 464
Fsp4HI GCNGC 5 cut(s) 9, 12, 17, 481, 606
GlaI GCGC 1 cut(s) 15
GluI GCNGC 5 cut(s) 9, 12, 17, 481, 606
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 3 cut(s) 105, 146, 200
HapII CCGG 2 cut(s) 30, 80
HgaI GACGC 2 cut(s) 85, 538
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpaII CCGG 2 cut(s) 30, 80
HphI GGTGA 2 cut(s) 142, 154
Hpy166II GTNNAC 2 cut(s) 343, 368
Hpy188I TCNGA 4 cut(s) 110, 119, 317, 443
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 2 cut(s) 343, 368
Hpy99I CGWCG 3 cut(s) 101, 104, 554
HpyAV CCTTC 4 cut(s) 136, 402, 406, 421
HpyCH4III ACNGT 5 cut(s) 40, 166, 295, 311, 613
HpyCH4IV ACGT 5 cut(s) 123, 159, 386, 497, 564
HpyCH4V TGCA 5 cut(s) 11, 70, 218, 256, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 605
HpyF3I CTNAG 2 cut(s) 303, 325
HpySE526I ACGT 5 cut(s) 123, 159, 386, 497, 564
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 3 cut(s) 205, 438, 622
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 5 cut(s) 43, 93, 384, 389, 534
Lsp1109I GCAGC 2 cut(s) 23, 592
MaeII ACGT 5 cut(s) 123, 159, 386, 497, 564
MaeIII GTNAC 2 cut(s) 34, 160
MalI GATC 3 cut(s) 207, 440, 624
MboI GATC 3 cut(s) 205, 438, 622
MboII GAAGA 3 cut(s) 97, 100, 427
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 2 cut(s) 134, 528
MnlI CCTC 8 cut(s) 104, 116, 187, 190, 261, 411, 437, 453
MseI TTAA 2 cut(s) 287, 531
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 30, 80
MspR9I CCNGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 102, 605
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 351
NdeII GATC 3 cut(s) 205, 438, 622
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 2 cut(s) 272, 349
NmuCI GTSAC 2 cut(s) 34, 160
OliI CACNNNNGTG 1 cut(s) 213
PceI AGGCCT 1 cut(s) 146
PflFI GACNNNGTC 1 cut(s) 548
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 5 cut(s) 10, 13, 18, 482, 607
PmaCI CACGTG 1 cut(s) 124
PmlI CACGTG 1 cut(s) 124
Ppu21I YACGTR 2 cut(s) 124, 498
PspCI CACGTG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 272, 349
PspPI GGNCC 3 cut(s) 317, 348, 544
PstI CTGCAG 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 287, 531
SatI GCNGC 5 cut(s) 9, 12, 17, 481, 606
Sau3AI GATC 3 cut(s) 205, 438, 622
Sau96I GGNCC 3 cut(s) 317, 348, 544
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 3 cut(s) 317, 348, 544
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 134, 528
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 5 cut(s) 17, 128, 480, 547, 603
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 351, 540
TaaI ACNGT 5 cut(s) 40, 166, 295, 311, 613
TaiI ACGT 5 cut(s) 126, 162, 389, 500, 567
TaqI TCGA 1 cut(s) 585
TasI AATT 2 cut(s) 134, 528
TauI GCSGC 2 cut(s) 19, 483
Tru1I TTAA 2 cut(s) 287, 531
Tru9I TTAA 2 cut(s) 287, 531
TscAI CASTG 3 cut(s) 244, 314, 429
TseFI GTSAC 2 cut(s) 34, 160
TseI GCWGC 3 cut(s) 8, 11, 605
Tsp45I GTSAC 2 cut(s) 34, 160
TspDTI ATGAA 2 cut(s) 217, 271
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 3 cut(s) 244, 314, 429
Tth111I GACNNNGTC 1 cut(s) 548
Van91I CCANNNNNTGG 1 cut(s) 541
VneI GTGCAC 1 cut(s) 366
VpaK11BI GGWCC 3 cut(s) 317, 348, 544
XapI RAATTY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.