Rroxscaffold_7G00164690

cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
6636304 .. 6638764
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164690.1

Sequence Viewer

Length: 1149 bp
ATGGCTCAGACGACTCCGAATCATACACAGACAGTTTCTGGGTGGGCAGCTCACGATTCCTCCGGCGAGATTACCCCTTTCATCTTCAAGCGAAGAGAAAACGGGATCAACGATGTCACGATAAAGATATTATACTGCGGGATATGCCACACTGATCTCCACCAAGCTAGGAATGACTGGGGCATCACCATGTATCCTGTTGTCCCTGGTCATGAGATTACTGGGGTGGTCACGAAAGTTGGGAGCAACGTGAAGAACTTCTCGGTCGGAGATAGAGTTGGAGTCGGGTGCTTGGCGGCGACGTGTTTGGAGTGCGATTTCTGCAAGGAATCCCAGGAGAACTACTGCGAGGACCTTCAATTTACCTACAATGGCATCTTCTGGGATGGTAGTATCACCTACGGTGGCTACTCCAAAATGTTGGTTGCTGATCATAGGTACGTGGTGCGCATACCAGAAAACCTACCAATGGATGCTGCAGCGCCGCTATTGTGTGCCGGAGTGACTGTGTTCAGCCCCTTGAGAGACCACGACTTGCACAAAACACCGGGGAAGAAGATAGGCGTTGTCGGCCTCGGAGGTCTCGGACACGTGGCGGTGAAATTCGGGAAGGCCTTTGGTCATCACGTCACCGTCATCAGCACCTCTCCGTCCAAAGAGAAAGAGGCCAAAGATCACTTGGGTGCAGACGATTTCATAGTCAGCACTGACGACCAACAAATGCAGAAAGGAAAGAGGAGCCTTGACTTCATGTTAAACACGGTGTCAGCTAAGCACTGTCTCGGACCACTCTTAGAGTTGCTCAAAGTGAACGGGACCATGGTGGTTGTGGGTGCACCTGACCAGCCCTTTACGTTGCCTTCCTTCCCTATGATATTTGGGTACATTAAACTATCATGCATGGTTATTGCTACAGGGAAGAGGGCAGTGAAGGGTAGTGTGATCGGAGGAATGGATGAGACGAGGGAGATGATGGAACTTTGCGGCAAACACAGCATTACGTGCGACATTGAGCTTACATCGCCAGACAAAATTAACCAAGCCTTGGACCGCGTCGCAAAGAATGACGTTAGGTATCGCTTTGTCATCGACATTGCTAATGCCCCCGCTGCTACTGTTGATGATGATCAAATCTGTTCCAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

41.6

Weight (kDa)

6.15

Isoelectric Point (pI)

27.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 153 2.4e-27 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 194 - 327 2.7e-17 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 1045
AccII CGCG 1 cut(s) 1053
AciI CCGC 7 cut(s) 138, 296, 485, 596, 984, 1051, 1107
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 602
AcvI CACGTG 1 cut(s) 592
AfaI GTAC 2 cut(s) 440, 884
AfiI CCNNNNNNNGG 2 cut(s) 469, 1045
AflIII ACRYGT 2 cut(s) 302, 589
AgsI TTSAA 2 cut(s) 88, 359
AjiI CACGTC 2 cut(s) 303, 628
AjnI CCWGG 2 cut(s) 205, 333
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 4 cut(s) 50, 167, 770, 1015
AluI AGCT 4 cut(s) 50, 167, 770, 1015
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 4 cut(s) 519, 587, 785, 953
Alw44I GTGCAC 1 cut(s) 834
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 3 cut(s) 571, 612, 666
ApaLI GTGCAC 1 cut(s) 834
ApeKI GCWGC 4 cut(s) 47, 476, 479, 1109
ApoI RAATTY 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 2 cut(s) 450, 484
AspS9I GGNCC 4 cut(s) 352, 785, 816, 1048
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 178, 388, 610, 622
AvaII GGWCC 4 cut(s) 352, 785, 816, 1048
BaeGI GKGCMC 1 cut(s) 838
BbrPI CACGTG 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 4 cut(s) 59, 463, 491, 1096
BccI CCATC 2 cut(s) 380, 967
BciT130I CCWGG 2 cut(s) 207, 335
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 2 cut(s) 430, 1126
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 4 cut(s) 519, 587, 785, 953
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 2 cut(s) 477, 912
BfoI RGCGCY 1 cut(s) 485
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 7 cut(s) 48, 297, 477, 480, 485, 985, 1110
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 7 cut(s) 49, 298, 478, 481, 486, 986, 1111
Bme1390I CCNGG 3 cut(s) 207, 335, 549
Bme18I GGWCC 4 cut(s) 352, 785, 816, 1048
BmgBI CACGTC 2 cut(s) 303, 628
BmgT120I GGNCC 4 cut(s) 352, 785, 816, 1048
BmiI GGNNCC 2 cut(s) 740, 817
BmrFI CCNGG 3 cut(s) 207, 335, 549
BmrI ACTGGG 2 cut(s) 187, 231
BmsI GCATC 3 cut(s) 192, 384, 463
BmuI ACTGGG 2 cut(s) 187, 231
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 1 cut(s) 549
BsaAI YACGTR 3 cut(s) 442, 592, 1002
BsaBI GATNNNNATC 1 cut(s) 1125
BsaI GGTCTC 2 cut(s) 519, 587
BsaJI CCNNGG 6 cut(s) 205, 333, 548, 574, 819, 1044
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 261, 291, 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 1045
Bse1I ACTGG 2 cut(s) 182, 226
Bse3DI GCAATG 1 cut(s) 1092
Bse8I GATNNNNATC 1 cut(s) 1125
BseBI CCWGG 2 cut(s) 207, 335
BseDI CCNNGG 6 cut(s) 205, 333, 548, 574, 819, 1044
BseGI GGATG 3 cut(s) 391, 478, 961
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 2 cut(s) 469, 1045
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 182, 226
BseRI GAGGAG 1 cut(s) 751
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 4 cut(s) 59, 463, 491, 1096
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 1053
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 573, 614, 668
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 838
BsiSI CCGG 3 cut(s) 63, 498, 548
BslFI GGGAC 2 cut(s) 188, 829
BslI CCNNNNNNNGG 2 cut(s) 469, 1045
BsmAI GTCTC 4 cut(s) 519, 587, 785, 953
BsmBI CGTCTC 1 cut(s) 953
BsmFI GGGAC 2 cut(s) 188, 829
BsnI GGCC 3 cut(s) 573, 614, 668
Bso31I GGTCTC 2 cut(s) 519, 587
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 7 cut(s) 138, 296, 485, 596, 984, 1051, 1107
BspANI GGCC 3 cut(s) 573, 614, 668
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 740, 817
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 113
BspTNI GGTCTC 2 cut(s) 519, 587
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 2 cut(s) 182, 226
BssECI CCNNGG 6 cut(s) 205, 333, 548, 574, 819, 1044
BssMI GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
BssT1I CCWWGG 2 cut(s) 819, 1044
Bst2UI CCWGG 2 cut(s) 207, 335
Bst4CI ACNGT 7 cut(s) 34, 404, 508, 634, 763, 779, 1117
Bst6I CTCTTC 2 cut(s) 88, 914
BstAPI GCANNNNNTGC 1 cut(s) 1002
BstBAI YACGTR 3 cut(s) 442, 592, 1002
BstDEI CTNAG 3 cut(s) 6, 771, 793
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 3 cut(s) 391, 478, 961
BstFNI CGCG 1 cut(s) 1053
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 2 cut(s) 450, 484
BstKTI GATC 6 cut(s) 108, 157, 433, 676, 945, 1129
BstMAI GTCTC 4 cut(s) 519, 587, 785, 953
BstMBI GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 7 cut(s) 144, 321, 570, 993, 1002, 1021, 1109
BstNI CCWGG 2 cut(s) 207, 335
BstSCI CCNGG 3 cut(s) 205, 333, 547
BstSFI CTRYAG 2 cut(s) 477, 912
BstSLI GKGCMC 1 cut(s) 838
BstUI CGCG 1 cut(s) 1053
BstV1I GCAGC 4 cut(s) 59, 463, 491, 1096
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 573, 614, 668
BtgI CCRYGG 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 1005
BtrI CACGTC 2 cut(s) 303, 628
BtsCI GGATG 3 cut(s) 391, 478, 961
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 4 cut(s) 150, 705, 775, 933
CaiI CAGNNNCTG 1 cut(s) 38
CciI TCATGA 1 cut(s) 211
CfoI GCGC 2 cut(s) 450, 484
Cfr13I GGNCC 4 cut(s) 352, 785, 816, 1048
CseI GACGC 1 cut(s) 1042
Csp6I GTAC 2 cut(s) 439, 883
CviAII CATG 6 cut(s) 190, 212, 751, 820, 897, 901
CviQI GTAC 2 cut(s) 439, 883
DdeI CTNAG 3 cut(s) 6, 771, 793
DpnI GATC 6 cut(s) 107, 156, 432, 675, 944, 1128
DpnII GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
Eam1104I CTCTTC 2 cut(s) 88, 914
EarI CTCTTC 2 cut(s) 88, 914
Eco130I CCWWGG 2 cut(s) 819, 1044
Eco147I AGGCCT 1 cut(s) 614
Eco31I GGTCTC 2 cut(s) 519, 587
Eco47I GGWCC 4 cut(s) 352, 785, 816, 1048
Eco72I CACGTG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 205, 333
EcoT14I CCWWGG 2 cut(s) 819, 1044
EcoT22I ATGCAT 1 cut(s) 902
ErhI CCWWGG 2 cut(s) 819, 1044
Esp3I CGTCTC 1 cut(s) 953
FaeI CATG 6 cut(s) 193, 215, 754, 823, 900, 904
FaqI GGGAC 2 cut(s) 188, 829
FatI CATG 6 cut(s) 189, 211, 750, 819, 896, 900
FauI CCCGC 2 cut(s) 131, 1114
FbaI TGATCA 2 cut(s) 430, 1126
Fnu4HI GCNGC 7 cut(s) 48, 297, 477, 480, 485, 985, 1110
FokI GGATG 3 cut(s) 398, 485, 968
Fsp4HI GCNGC 7 cut(s) 48, 297, 477, 480, 485, 985, 1110
FspAI RTGCGCAY 1 cut(s) 449
FspBI CTAG 1 cut(s) 168
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 2 cut(s) 449, 483
GluI GCNGC 7 cut(s) 48, 297, 477, 480, 485, 985, 1110
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 3 cut(s) 573, 614, 668
HapII CCGG 3 cut(s) 63, 498, 548
HgaI GACGC 1 cut(s) 1042
HhaI GCGC 2 cut(s) 450, 484
Hin1II CATG 6 cut(s) 193, 215, 754, 823, 900, 904
Hin6I GCGC 2 cut(s) 448, 482
HinP1I GCGC 2 cut(s) 448, 482
HinfI GANTC 5 cut(s) 13, 19, 56, 282, 329
HpaII CCGG 3 cut(s) 63, 498, 548
HphI GGTGA 4 cut(s) 178, 388, 610, 622
Hpy166II GTNNAC 2 cut(s) 811, 836
Hpy188I TCNGA 7 cut(s) 9, 18, 269, 578, 587, 785, 947
Hpy188III TCNNGA 5 cut(s) 53, 118, 212, 232, 607
Hpy8I GTNNAC 2 cut(s) 811, 836
Hpy99I CGWCG 2 cut(s) 304, 1058
HpyAV CCTTC 5 cut(s) 365, 604, 870, 874, 925
HpyCH4III ACNGT 7 cut(s) 34, 404, 508, 634, 763, 779, 1117
HpyCH4IV ACGT 8 cut(s) 249, 302, 441, 591, 627, 854, 1001, 1068
HpyCH4V TGCA 7 cut(s) 324, 479, 538, 686, 724, 836, 900
HpyF10VI GCNNNNNNNGC 7 cut(s) 144, 321, 570, 993, 1002, 1021, 1109
HpyF3I CTNAG 3 cut(s) 6, 771, 793
HpySE526I ACGT 8 cut(s) 249, 302, 441, 591, 627, 854, 1001, 1068
Hsp92II CATG 6 cut(s) 193, 215, 754, 823, 900, 904
HspAI GCGC 2 cut(s) 448, 482
Ksp22I TGATCA 2 cut(s) 430, 1126
Kzo9I GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
LmnI GCTCC 2 cut(s) 243, 738
Lsp1109I GCAGC 4 cut(s) 59, 463, 491, 1096
LweI GCATC 3 cut(s) 192, 384, 463
MaeI CTAG 1 cut(s) 168
MaeII ACGT 8 cut(s) 249, 302, 441, 591, 627, 854, 1001, 1068
MaeIII GTNAC 4 cut(s) 115, 229, 502, 628
MalI GATC 6 cut(s) 107, 156, 432, 675, 944, 1128
MboI GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
MboII GAAGA 7 cut(s) 76, 105, 265, 370, 565, 568, 931
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 3 cut(s) 359, 602, 1032
MlyI GAGTC 2 cut(s) 7, 291
MmeI TCCRAC 2 cut(s) 247, 259
Mph1103I ATGCAT 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 755, 888, 1035
MslI CAYNNNNRTG 2 cut(s) 188, 681
MspA1I CMGCKG 1 cut(s) 1109
MspI CCGG 3 cut(s) 63, 498, 548
MspR9I CCNGG 3 cut(s) 207, 335, 549
MvaI CCWGG 2 cut(s) 207, 335
MvnI CGCG 1 cut(s) 1053
MwoI GCNNNNNNNGC 7 cut(s) 144, 321, 570, 993, 1002, 1021, 1109
NciI CCSGG 1 cut(s) 549
NcoI CCATGG 1 cut(s) 819
NdeII GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
NlaIII CATG 6 cut(s) 193, 215, 754, 823, 900, 904
NlaIV GGNNCC 2 cut(s) 740, 817
NmuCI GTSAC 4 cut(s) 115, 229, 502, 628
NsbI TGCGCA 1 cut(s) 449
NsiI ATGCAT 1 cut(s) 902
OliI CACNNNNGTG 1 cut(s) 681
PagI TCATGA 1 cut(s) 211
PceI AGGCCT 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 19, 56, 329
PflFI GACNNNGTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 1045
PkrI GCNGC 7 cut(s) 49, 298, 478, 481, 486, 986, 1111
PleI GAGTC 2 cut(s) 7, 290
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 2 cut(s) 7, 290
Ppu21I YACGTR 3 cut(s) 442, 592, 1002
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 205, 333
PspCI CACGTG 1 cut(s) 592
PspGI CCWGG 2 cut(s) 205, 333
PspN4I GGNNCC 2 cut(s) 740, 817
PspPI GGNCC 4 cut(s) 352, 785, 816, 1048
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 1052
RsaI GTAC 2 cut(s) 440, 884
RsaNI GTAC 2 cut(s) 439, 883
RseI CAYNNNNRTG 2 cut(s) 188, 681
SaqAI TTAA 3 cut(s) 755, 888, 1035
SatI GCNGC 7 cut(s) 48, 297, 477, 480, 485, 985, 1110
Sau3AI GATC 6 cut(s) 105, 154, 430, 673, 942, 1126
Sau96I GGNCC 4 cut(s) 352, 785, 816, 1048
SchI GAGTC 2 cut(s) 7, 291
ScrFI CCNGG 3 cut(s) 207, 335, 549
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 3 cut(s) 192, 384, 463
SfcI CTRYAG 2 cut(s) 477, 912
SinI GGWCC 4 cut(s) 352, 785, 816, 1048
SmiMI CAYNNNNRTG 2 cut(s) 188, 681
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
Sse9I AATT 3 cut(s) 359, 602, 1032
SseBI AGGCCT 1 cut(s) 614
SsiI CCGC 7 cut(s) 138, 296, 485, 596, 984, 1051, 1107
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 205, 333, 547
StyI CCWWGG 2 cut(s) 819, 1044
TaaI ACNGT 7 cut(s) 34, 404, 508, 634, 763, 779, 1117
TaiI ACGT 8 cut(s) 252, 305, 444, 594, 630, 857, 1004, 1071
TaqI TCGA 1 cut(s) 1089
TaqII GACCGA 1 cut(s) 253
TasI AATT 3 cut(s) 359, 602, 1032
TauI GCSGC 3 cut(s) 299, 487, 987
TfiI GAWTC 3 cut(s) 19, 56, 329
Tru1I TTAA 3 cut(s) 755, 888, 1035
Tru9I TTAA 3 cut(s) 755, 888, 1035
TscAI CASTG 4 cut(s) 157, 712, 782, 933
TseFI GTSAC 4 cut(s) 115, 229, 502, 628
TseI GCWGC 4 cut(s) 47, 476, 479, 1109
Tsp45I GTSAC 4 cut(s) 115, 229, 502, 628
TspDTI ATGAA 3 cut(s) 70, 685, 739
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 4 cut(s) 157, 712, 782, 933
Tth111I GACNNNGTC 1 cut(s) 1052
Van91I CCANNNNNTGG 1 cut(s) 1045
VneI GTGCAC 1 cut(s) 834
VpaK11BI GGWCC 4 cut(s) 352, 785, 816, 1048
XapI RAATTY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 826
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.