Rw6G037760

cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012582
Physical Location & Seq
Forward (+)
62042932 .. 62045947
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037760.1

Sequence Viewer

Length: 1113 bp
ATGGCTCAGACGACTCCGAATCATACACAGACCGTTTCTGGGTGGGCAGCTCAAGATTCGTCCGGCGAGATTACCCCTTTCATCTTCAAGCGAAGAGAAAACGGGATCAACGATGTCACGATAAAGATATTATACTGCGGGATATGCCACACTGATCTCCACCAAGCTAGGAATGACTGGGGCATCACCATGTATCCTGTTGTCCCTGGTCATGAGATTACTGGGGTGGTCACGAAAGTTGGGAGCAACGTGAAGAACTTCTCGGTCGGAGATAGAGTTGGAGTCGGGTGCTTGGCGGCGACGTGTTTGGAGTGCGATTTCTGCAAGGAATCCCAGGAGAACTACTGCGAGGACGTTCAATTTACCTACAATGGCATCTTCTGGGATGGTAGTATCACCTATGGTGGCTACTCCAAAATGTTGGTTGCTGATCATAGGTACGTGGTGCGCATACCAGAAAACCTACCAATGGATGCTGCAGCGCCGCTATTGTGTGCCGGAGTGACTGTGTTCAGCCCCTTGAGAGACCACGACTTGCACAAAACACCGGGGAAGAAGATAGGAGTCGTCGGCCTCGGAGGTCTCGGACACGTGGCGGTGAAATTCGGGAAGGCCTTTGGTCATCACGTCACCGTCATCAGCACCTCTCCGTCCAAAGAGAAAGAGGCCAAAGATCACTTGGGTGCAGACGATTTCATAGTCAGCACTGACGACCAACAAATGCAGAAAGGAAAGAGGAGCCTTGACTTCATATTAAACACGGTGTCAGCTAAGCACTGTCTCGGACCACTCTTAGAGTTGCTCAAAGTGAACGGGACCATGGTGGTTGTGGGTGCACCTGACCAGCCCTTTACGTTGCCTTCCTTCCCTATGATATTTGGGAAGAGGGCAGTGAAGGGTAGTGTGATCGGAGGAATGGATGAGACGAGGGAGATGATGGAACTCTGCGGCAAACACAACATTACGTGCGACATTGAGCTTACATCGCCAGACAAAATTAACCAAGCCTTGGACCGCGTCGCAAAGAATGATGTTAGGTATCGCTTTGTCATTGACATTGCTAATGCCCCCTCTGCTACTGTTGATGATGATCAAATCTGTTCCAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

370

Amino Acids

40.32

Weight (kDa)

6.0

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 153 3e-27 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 194 - 315 2.5e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 1009
AccII CGCG 1 cut(s) 1017
AciI CCGC 6 cut(s) 138, 296, 485, 596, 948, 1015
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 602
AcvI CACGTG 1 cut(s) 592
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 39, 469, 1009
AflIII ACRYGT 2 cut(s) 302, 589
AgsI TTSAA 2 cut(s) 88, 359
AjiI CACGTC 2 cut(s) 303, 628
AjnI CCWGG 2 cut(s) 205, 333
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 4 cut(s) 50, 167, 770, 979
AluI AGCT 4 cut(s) 50, 167, 770, 979
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 4 cut(s) 519, 587, 785, 917
Alw44I GTGCAC 1 cut(s) 834
AlwI GGATC 1 cut(s) 113
AoxI GGCC 3 cut(s) 571, 612, 666
ApaLI GTGCAC 1 cut(s) 834
ApeKI GCWGC 3 cut(s) 47, 476, 479
ApoI RAATTY 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 2 cut(s) 450, 484
AspS9I GGNCC 3 cut(s) 785, 816, 1012
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 178, 388, 610, 622
AvaII GGWCC 3 cut(s) 785, 816, 1012
BaeGI GKGCMC 1 cut(s) 838
BbrPI CACGTG 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 3 cut(s) 59, 463, 491
BccI CCATC 2 cut(s) 380, 931
BciT130I CCWGG 2 cut(s) 207, 335
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 2 cut(s) 430, 1090
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 4 cut(s) 519, 587, 785, 917
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 485
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 6 cut(s) 48, 297, 477, 480, 485, 949
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 6 cut(s) 49, 298, 478, 481, 486, 950
Bme1390I CCNGG 3 cut(s) 207, 335, 549
Bme18I GGWCC 3 cut(s) 785, 816, 1012
BmgBI CACGTC 2 cut(s) 303, 628
BmgT120I GGNCC 3 cut(s) 785, 816, 1012
BmiI GGNNCC 2 cut(s) 740, 817
BmrFI CCNGG 3 cut(s) 207, 335, 549
BmrI ACTGGG 2 cut(s) 187, 231
BmsI GCATC 3 cut(s) 192, 384, 463
BmuI ACTGGG 2 cut(s) 187, 231
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 36, 541
BpuMI CCSGG 1 cut(s) 549
BsaAI YACGTR 3 cut(s) 442, 592, 966
BsaBI GATNNNNATC 1 cut(s) 1089
BsaI GGTCTC 2 cut(s) 519, 587
BsaJI CCNNGG 6 cut(s) 205, 333, 548, 574, 819, 1008
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 492, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 469, 1009
Bse1I ACTGG 2 cut(s) 182, 226
Bse3DI GCAATG 1 cut(s) 1056
Bse8I GATNNNNATC 1 cut(s) 1089
BseBI CCWGG 2 cut(s) 207, 335
BseDI CCNNGG 6 cut(s) 205, 333, 548, 574, 819, 1008
BseGI GGATG 3 cut(s) 391, 478, 925
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 3 cut(s) 39, 469, 1009
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 182, 226
BseRI GAGGAG 1 cut(s) 751
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 3 cut(s) 59, 463, 491
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 1017
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 573, 614, 668
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 838
BsiSI CCGG 3 cut(s) 63, 498, 548
BslFI GGGAC 2 cut(s) 188, 829
BslI CCNNNNNNNGG 3 cut(s) 39, 469, 1009
BsmAI GTCTC 4 cut(s) 519, 587, 785, 917
BsmBI CGTCTC 1 cut(s) 917
BsmFI GGGAC 2 cut(s) 188, 829
BsnI GGCC 3 cut(s) 573, 614, 668
Bso31I GGTCTC 2 cut(s) 519, 587
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 6 cut(s) 138, 296, 485, 596, 948, 1015
BspANI GGCC 3 cut(s) 573, 614, 668
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 1017
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 740, 817
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 113
BspTNI GGTCTC 2 cut(s) 519, 587
BsrDI GCAATG 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 182, 226
BssECI CCNNGG 6 cut(s) 205, 333, 548, 574, 819, 1008
BssMI GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
BssT1I CCWWGG 2 cut(s) 819, 1008
Bst2UI CCWGG 2 cut(s) 207, 335
Bst4CI ACNGT 6 cut(s) 34, 508, 634, 763, 779, 1081
Bst6I CTCTTC 2 cut(s) 88, 878
BstBAI YACGTR 3 cut(s) 442, 592, 966
BstDEI CTNAG 3 cut(s) 6, 771, 793
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 3 cut(s) 391, 478, 925
BstFNI CGCG 1 cut(s) 1017
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 2 cut(s) 450, 484
BstKTI GATC 6 cut(s) 108, 157, 433, 676, 909, 1093
BstMAI GTCTC 4 cut(s) 519, 587, 785, 917
BstMBI GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 4 cut(s) 144, 321, 985, 1073
BstNI CCWGG 2 cut(s) 207, 335
BstSCI CCNGG 3 cut(s) 205, 333, 547
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 838
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 3 cut(s) 59, 463, 491
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 573, 614, 668
BtgI CCRYGG 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 969
BtrI CACGTC 2 cut(s) 303, 628
BtsCI GGATG 3 cut(s) 391, 478, 925
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 4 cut(s) 150, 705, 775, 897
CciI TCATGA 1 cut(s) 211
CfoI GCGC 2 cut(s) 450, 484
Cfr13I GGNCC 3 cut(s) 785, 816, 1012
CseI GACGC 1 cut(s) 1006
Csp6I GTAC 1 cut(s) 439
CviAII CATG 3 cut(s) 190, 212, 820
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 6, 771, 793
DpnI GATC 6 cut(s) 107, 156, 432, 675, 908, 1092
DpnII GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
Eam1104I CTCTTC 2 cut(s) 88, 878
EarI CTCTTC 2 cut(s) 88, 878
Eco130I CCWWGG 2 cut(s) 819, 1008
Eco147I AGGCCT 1 cut(s) 614
Eco31I GGTCTC 2 cut(s) 519, 587
Eco47I GGWCC 3 cut(s) 785, 816, 1012
Eco72I CACGTG 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 205, 333
EcoT14I CCWWGG 2 cut(s) 819, 1008
ErhI CCWWGG 2 cut(s) 819, 1008
Esp3I CGTCTC 1 cut(s) 917
FaeI CATG 3 cut(s) 193, 215, 823
FaqI GGGAC 2 cut(s) 188, 829
FatI CATG 3 cut(s) 189, 211, 819
FauI CCCGC 1 cut(s) 131
FbaI TGATCA 2 cut(s) 430, 1090
Fnu4HI GCNGC 6 cut(s) 48, 297, 477, 480, 485, 949
FokI GGATG 3 cut(s) 398, 485, 932
Fsp4HI GCNGC 6 cut(s) 48, 297, 477, 480, 485, 949
FspAI RTGCGCAY 1 cut(s) 449
FspBI CTAG 1 cut(s) 168
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 2 cut(s) 449, 483
GluI GCNGC 6 cut(s) 48, 297, 477, 480, 485, 949
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 3 cut(s) 573, 614, 668
HapII CCGG 3 cut(s) 63, 498, 548
HgaI GACGC 1 cut(s) 1006
HhaI GCGC 2 cut(s) 450, 484
Hin1II CATG 3 cut(s) 193, 215, 823
Hin6I GCGC 2 cut(s) 448, 482
HinP1I GCGC 2 cut(s) 448, 482
HinfI GANTC 6 cut(s) 13, 19, 56, 282, 329, 564
HpaII CCGG 3 cut(s) 63, 498, 548
HphI GGTGA 4 cut(s) 178, 388, 610, 622
Hpy166II GTNNAC 2 cut(s) 811, 836
Hpy188I TCNGA 7 cut(s) 9, 18, 269, 578, 587, 785, 911
Hpy188III TCNNGA 5 cut(s) 53, 118, 212, 232, 607
Hpy8I GTNNAC 2 cut(s) 811, 836
Hpy99I CGWCG 3 cut(s) 304, 572, 1022
HpyAV CCTTC 4 cut(s) 604, 870, 874, 889
HpyCH4III ACNGT 6 cut(s) 34, 508, 634, 763, 779, 1081
HpyCH4IV ACGT 8 cut(s) 249, 302, 354, 441, 591, 627, 854, 965
HpyCH4V TGCA 6 cut(s) 324, 479, 538, 686, 724, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 321, 985, 1073
HpyF3I CTNAG 3 cut(s) 6, 771, 793
HpySE526I ACGT 8 cut(s) 249, 302, 354, 441, 591, 627, 854, 965
Hsp92II CATG 3 cut(s) 193, 215, 823
HspAI GCGC 2 cut(s) 448, 482
Ksp22I TGATCA 2 cut(s) 430, 1090
Kzo9I GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
LmnI GCTCC 2 cut(s) 243, 738
Lsp1109I GCAGC 3 cut(s) 59, 463, 491
LweI GCATC 3 cut(s) 192, 384, 463
MaeI CTAG 1 cut(s) 168
MaeII ACGT 8 cut(s) 249, 302, 354, 441, 591, 627, 854, 965
MaeIII GTNAC 4 cut(s) 115, 229, 502, 628
MalI GATC 6 cut(s) 107, 156, 432, 675, 908, 1092
MboI GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
MboII GAAGA 7 cut(s) 76, 105, 265, 370, 565, 568, 895
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 3 cut(s) 359, 602, 996
MlyI GAGTC 3 cut(s) 7, 291, 573
MmeI TCCRAC 2 cut(s) 247, 259
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 755, 999
MslI CAYNNNNRTG 2 cut(s) 188, 681
MspI CCGG 3 cut(s) 63, 498, 548
MspR9I CCNGG 3 cut(s) 207, 335, 549
MvaI CCWGG 2 cut(s) 207, 335
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 4 cut(s) 144, 321, 985, 1073
NciI CCSGG 1 cut(s) 549
NcoI CCATGG 1 cut(s) 819
NdeII GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
NlaIII CATG 3 cut(s) 193, 215, 823
NlaIV GGNNCC 2 cut(s) 740, 817
NmuCI GTSAC 4 cut(s) 115, 229, 502, 628
NsbI TGCGCA 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 681
PagI TCATGA 1 cut(s) 211
PceI AGGCCT 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 19, 56, 329
PflFI GACNNNGTC 1 cut(s) 1016
PflMI CCANNNNNTGG 1 cut(s) 1009
PkrI GCNGC 6 cut(s) 49, 298, 478, 481, 486, 950
PleI GAGTC 3 cut(s) 7, 290, 572
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 3 cut(s) 7, 290, 572
Ppu21I YACGTR 3 cut(s) 442, 592, 966
Psp6I CCWGG 2 cut(s) 205, 333
PspCI CACGTG 1 cut(s) 592
PspGI CCWGG 2 cut(s) 205, 333
PspN4I GGNNCC 2 cut(s) 740, 817
PspPI GGNCC 3 cut(s) 785, 816, 1012
PstI CTGCAG 1 cut(s) 481
PsyI GACNNNGTC 1 cut(s) 1016
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 2 cut(s) 188, 681
SaqAI TTAA 2 cut(s) 755, 999
SatI GCNGC 6 cut(s) 48, 297, 477, 480, 485, 949
Sau3AI GATC 6 cut(s) 105, 154, 430, 673, 906, 1090
Sau96I GGNCC 3 cut(s) 785, 816, 1012
SchI GAGTC 3 cut(s) 7, 291, 573
ScrFI CCNGG 3 cut(s) 207, 335, 549
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 3 cut(s) 192, 384, 463
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 785, 816, 1012
SmiMI CAYNNNNRTG 2 cut(s) 188, 681
SmlI CTYRAG 2 cut(s) 51, 520
SmoI CTYRAG 2 cut(s) 51, 520
Sse9I AATT 3 cut(s) 359, 602, 996
SseBI AGGCCT 1 cut(s) 614
SsiI CCGC 6 cut(s) 138, 296, 485, 596, 948, 1015
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 205, 333, 547
StyI CCWWGG 2 cut(s) 819, 1008
TaaI ACNGT 6 cut(s) 34, 508, 634, 763, 779, 1081
TaiI ACGT 8 cut(s) 252, 305, 357, 444, 594, 630, 857, 968
TaqII GACCGA 1 cut(s) 253
TasI AATT 3 cut(s) 359, 602, 996
TauI GCSGC 3 cut(s) 299, 487, 951
TfiI GAWTC 3 cut(s) 19, 56, 329
Tru1I TTAA 2 cut(s) 755, 999
Tru9I TTAA 2 cut(s) 755, 999
TscAI CASTG 4 cut(s) 157, 712, 782, 897
TseFI GTSAC 4 cut(s) 115, 229, 502, 628
TseI GCWGC 3 cut(s) 47, 476, 479
Tsp45I GTSAC 4 cut(s) 115, 229, 502, 628
TspDTI ATGAA 3 cut(s) 70, 685, 739
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 4 cut(s) 157, 712, 782, 897
Tth111I GACNNNGTC 1 cut(s) 1016
Van91I CCANNNNNTGG 1 cut(s) 1009
VneI GTGCAC 1 cut(s) 834
VpaK11BI GGWCC 3 cut(s) 785, 816, 1012
XapI RAATTY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 826
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.