Rh6DG435000

cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012582
Physical Location & Seq
Forward (+)
61360066 .. 61363156
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG435000.1

Sequence Viewer

Length: 888 bp
ATGGCTCAGACGACTCCGAATCATACACAGACCGTTTCTGGGTGGGCAGCTCACGATTCCTCCGGCGAGATTACCCCTTTCATCTTCAAGCGAAGAGAAAACGGGATCAACGATGTCACGATAAAGATATTATACTGCGGGATATGCCACACTGATCTCCACCAAGCTAGGAATGACTGGGGCATCACCATGTATCCTGTTGTCCCTGGTCATGAGATTACTGGGGTGGTCACGAAAGTTGGGAGCAACGTGAAGAACTTCTCGGTCGGAGATAGAGTTGGAGTCGGGTGCTTGGCGGCGACGTGTTTGGAGTGCGATTTCTGCAAGGAATCCCAGGAGAACTACTGCGAGGACCTTCAATTTACCTACAATGGCATCTTCTGGGATGGTAGTATCACCTATGGTGGCTACTCCAAAATGTTGGTTGCTGATCATAGGTACGTGGTGCGCATACCAGAAAACCTACCAATGGATGCTGCAGCGCCGCTATTGTGTGCCGGAGTGACTGTGTTCAGCCCCTTGAGAGACCACGACTTGCACAAAACACCGGGGAAGAAGATAGGCGTCGTCGGCCTCGGAGGTCTCGGACACGTGGCGGTGAAATTCGGGAAGGCCTTTGGTCATCACGTCACCGTCATCAGCACCTCTCCGTCCAAAGAGAAAGAGGCCAAAGATCACTTGGGTGCAGACGATTTCATAGTCAGCACTGACGACCAACAAATGCAGAAAGGAAAGAGGAGCCTTGACTTCATATTAAACACGGTGTCAGCTAAGCACTGTCTCGGACCACTCTTAGAGTTGCTCAAAGTGAACGGGACCATGGTGGTTGTGGGTGCACCTGACCAGCCCTTTACGTTGCCTTCCTTCCCTATGATATTTGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

295

Amino Acids

32.05

Weight (kDa)

6.34

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 153 1.4e-27 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 194 - 293 3e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 449
AciI CCGC 4 cut(s) 138, 296, 485, 596
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 602
AcvI CACGTG 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 2 cut(s) 440, 883
AfiI CCNNNNNNNGG 2 cut(s) 39, 469
AflIII ACRYGT 2 cut(s) 302, 589
AgsI TTSAA 2 cut(s) 88, 359
AjiI CACGTC 2 cut(s) 303, 628
AjnI CCWGG 2 cut(s) 205, 333
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 3 cut(s) 50, 167, 770
AluI AGCT 3 cut(s) 50, 167, 770
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 3 cut(s) 519, 587, 785
Alw44I GTGCAC 1 cut(s) 834
AlwI GGATC 1 cut(s) 113
AoxI GGCC 3 cut(s) 571, 612, 666
ApaLI GTGCAC 1 cut(s) 834
ApeKI GCWGC 3 cut(s) 47, 476, 479
ApoI RAATTY 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 2 cut(s) 450, 484
AspS9I GGNCC 3 cut(s) 352, 785, 816
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 178, 388, 610, 622
AvaII GGWCC 3 cut(s) 352, 785, 816
BaeGI GKGCMC 1 cut(s) 838
BbrPI CACGTG 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 3 cut(s) 59, 463, 491
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 207, 335
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 3 cut(s) 519, 587, 785
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 485
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 5 cut(s) 48, 297, 477, 480, 485
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 5 cut(s) 49, 298, 478, 481, 486
Bme1390I CCNGG 3 cut(s) 207, 335, 549
Bme18I GGWCC 3 cut(s) 352, 785, 816
BmgBI CACGTC 2 cut(s) 303, 628
BmgT120I GGNCC 3 cut(s) 352, 785, 816
BmiI GGNNCC 2 cut(s) 740, 817
BmrFI CCNGG 3 cut(s) 207, 335, 549
BmrI ACTGGG 2 cut(s) 187, 231
BmsI GCATC 3 cut(s) 192, 384, 463
BmuI ACTGGG 2 cut(s) 187, 231
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 1 cut(s) 549
BsaAI YACGTR 3 cut(s) 442, 592, 885
BsaHI GRCGYC 1 cut(s) 564
BsaI GGTCTC 2 cut(s) 519, 587
BsaJI CCNNGG 5 cut(s) 205, 333, 548, 574, 819
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 261, 291, 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 469
Bse1I ACTGG 2 cut(s) 182, 226
BseBI CCWGG 2 cut(s) 207, 335
BseDI CCNNGG 5 cut(s) 205, 333, 548, 574, 819
BseGI GGATG 2 cut(s) 391, 478
BseLI CCNNNNNNNGG 2 cut(s) 39, 469
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 182, 226
BseRI GAGGAG 1 cut(s) 751
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 3 cut(s) 59, 463, 491
BsgI GTGCAG 1 cut(s) 705
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 573, 614, 668
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 838
BsiSI CCGG 3 cut(s) 63, 498, 548
BslFI GGGAC 2 cut(s) 188, 829
BslI CCNNNNNNNGG 2 cut(s) 39, 469
BsmAI GTCTC 3 cut(s) 519, 587, 785
BsmFI GGGAC 2 cut(s) 188, 829
BsnI GGCC 3 cut(s) 573, 614, 668
Bso31I GGTCTC 2 cut(s) 519, 587
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 4 cut(s) 105, 154, 430, 673
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 4 cut(s) 138, 296, 485, 596
BspANI GGCC 3 cut(s) 573, 614, 668
BspCNI CTCAG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 740, 817
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 113
BspTNI GGTCTC 2 cut(s) 519, 587
BsrI ACTGG 2 cut(s) 182, 226
BssECI CCNNGG 5 cut(s) 205, 333, 548, 574, 819
BssMI GATC 4 cut(s) 105, 154, 430, 673
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 207, 335
Bst4CI ACNGT 5 cut(s) 34, 508, 634, 763, 779
Bst6I CTCTTC 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 564
BstBAI YACGTR 3 cut(s) 442, 592, 885
BstDEI CTNAG 3 cut(s) 6, 771, 793
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 2 cut(s) 391, 478
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 2 cut(s) 450, 484
BstKTI GATC 4 cut(s) 108, 157, 433, 676
BstMAI GTCTC 3 cut(s) 519, 587, 785
BstMBI GATC 4 cut(s) 105, 154, 430, 673
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 3 cut(s) 144, 321, 570
BstNI CCWGG 2 cut(s) 207, 335
BstSCI CCNGG 3 cut(s) 205, 333, 547
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 838
BstSNI TACGTA 1 cut(s) 885
BstV1I GCAGC 3 cut(s) 59, 463, 491
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 573, 614, 668
BtgI CCRYGG 1 cut(s) 819
BtrI CACGTC 2 cut(s) 303, 628
BtsCI GGATG 2 cut(s) 391, 478
BtsIMutI CAGTG 3 cut(s) 150, 705, 775
CciI TCATGA 1 cut(s) 211
CfoI GCGC 2 cut(s) 450, 484
Cfr13I GGNCC 3 cut(s) 352, 785, 816
CseI GACGC 1 cut(s) 553
Csp6I GTAC 2 cut(s) 439, 882
CviAII CATG 3 cut(s) 190, 212, 820
CviQI GTAC 2 cut(s) 439, 882
DdeI CTNAG 3 cut(s) 6, 771, 793
DpnI GATC 4 cut(s) 107, 156, 432, 675
DpnII GATC 4 cut(s) 105, 154, 430, 673
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco105I TACGTA 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 819
Eco147I AGGCCT 1 cut(s) 614
Eco31I GGTCTC 2 cut(s) 519, 587
Eco47I GGWCC 3 cut(s) 352, 785, 816
Eco72I CACGTG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 205, 333
EcoT14I CCWWGG 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 819
FaeI CATG 3 cut(s) 193, 215, 823
FaqI GGGAC 2 cut(s) 188, 829
FatI CATG 3 cut(s) 189, 211, 819
FauI CCCGC 1 cut(s) 131
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 5 cut(s) 48, 297, 477, 480, 485
FokI GGATG 2 cut(s) 398, 485
Fsp4HI GCNGC 5 cut(s) 48, 297, 477, 480, 485
FspAI RTGCGCAY 1 cut(s) 449
FspBI CTAG 1 cut(s) 168
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 2 cut(s) 449, 483
GluI GCNGC 5 cut(s) 48, 297, 477, 480, 485
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 3 cut(s) 573, 614, 668
HapII CCGG 3 cut(s) 63, 498, 548
HgaI GACGC 1 cut(s) 553
HhaI GCGC 2 cut(s) 450, 484
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 3 cut(s) 193, 215, 823
Hin6I GCGC 2 cut(s) 448, 482
HinP1I GCGC 2 cut(s) 448, 482
HinfI GANTC 5 cut(s) 13, 19, 56, 282, 329
HpaII CCGG 3 cut(s) 63, 498, 548
HphI GGTGA 4 cut(s) 178, 388, 610, 622
Hpy166II GTNNAC 2 cut(s) 811, 836
Hpy188I TCNGA 6 cut(s) 9, 18, 269, 578, 587, 785
Hpy188III TCNNGA 5 cut(s) 53, 118, 212, 232, 607
Hpy8I GTNNAC 2 cut(s) 811, 836
Hpy99I CGWCG 3 cut(s) 304, 569, 572
HpyAV CCTTC 4 cut(s) 365, 604, 870, 874
HpyCH4III ACNGT 5 cut(s) 34, 508, 634, 763, 779
HpyCH4IV ACGT 7 cut(s) 249, 302, 441, 591, 627, 854, 884
HpyCH4V TGCA 6 cut(s) 324, 479, 538, 686, 724, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 321, 570
HpyF3I CTNAG 3 cut(s) 6, 771, 793
HpySE526I ACGT 7 cut(s) 249, 302, 441, 591, 627, 854, 884
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 3 cut(s) 193, 215, 823
HspAI GCGC 2 cut(s) 448, 482
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 105, 154, 430, 673
LmnI GCTCC 2 cut(s) 243, 738
Lsp1109I GCAGC 3 cut(s) 59, 463, 491
LweI GCATC 3 cut(s) 192, 384, 463
MaeI CTAG 1 cut(s) 168
MaeII ACGT 7 cut(s) 249, 302, 441, 591, 627, 854, 884
MaeIII GTNAC 4 cut(s) 115, 229, 502, 628
MalI GATC 4 cut(s) 107, 156, 432, 675
MboI GATC 4 cut(s) 105, 154, 430, 673
MboII GAAGA 6 cut(s) 76, 105, 265, 370, 565, 568
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 2 cut(s) 359, 602
MlyI GAGTC 2 cut(s) 7, 291
MmeI TCCRAC 2 cut(s) 247, 259
MnlI CCTC 7 cut(s) 70, 343, 572, 584, 655, 658, 729
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 755
MslI CAYNNNNRTG 2 cut(s) 188, 681
MspI CCGG 3 cut(s) 63, 498, 548
MspR9I CCNGG 3 cut(s) 207, 335, 549
MvaI CCWGG 2 cut(s) 207, 335
MwoI GCNNNNNNNGC 3 cut(s) 144, 321, 570
NciI CCSGG 1 cut(s) 549
NcoI CCATGG 1 cut(s) 819
NdeII GATC 4 cut(s) 105, 154, 430, 673
NlaIII CATG 3 cut(s) 193, 215, 823
NlaIV GGNNCC 2 cut(s) 740, 817
NmuCI GTSAC 4 cut(s) 115, 229, 502, 628
NsbI TGCGCA 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 681
PagI TCATGA 1 cut(s) 211
PceI AGGCCT 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 19, 56, 329
PkrI GCNGC 5 cut(s) 49, 298, 478, 481, 486
PleI GAGTC 2 cut(s) 7, 290
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 2 cut(s) 7, 290
Ppu21I YACGTR 3 cut(s) 442, 592, 885
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 205, 333
PspCI CACGTG 1 cut(s) 592
PspGI CCWGG 2 cut(s) 205, 333
PspN4I GGNNCC 2 cut(s) 740, 817
PspPI GGNCC 3 cut(s) 352, 785, 816
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 481
RsaI GTAC 2 cut(s) 440, 883
RsaNI GTAC 2 cut(s) 439, 882
RseI CAYNNNNRTG 2 cut(s) 188, 681
SaqAI TTAA 1 cut(s) 755
SatI GCNGC 5 cut(s) 48, 297, 477, 480, 485
Sau3AI GATC 4 cut(s) 105, 154, 430, 673
Sau96I GGNCC 3 cut(s) 352, 785, 816
SchI GAGTC 2 cut(s) 7, 291
ScrFI CCNGG 3 cut(s) 207, 335, 549
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 3 cut(s) 192, 384, 463
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 352, 785, 816
SmiMI CAYNNNNRTG 2 cut(s) 188, 681
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
SnaBI TACGTA 1 cut(s) 885
Sse9I AATT 2 cut(s) 359, 602
SseBI AGGCCT 1 cut(s) 614
SsiI CCGC 4 cut(s) 138, 296, 485, 596
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 205, 333, 547
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 5 cut(s) 34, 508, 634, 763, 779
TaiI ACGT 7 cut(s) 252, 305, 444, 594, 630, 857, 887
TaqII GACCGA 1 cut(s) 253
TasI AATT 2 cut(s) 359, 602
TauI GCSGC 2 cut(s) 299, 487
TfiI GAWTC 3 cut(s) 19, 56, 329
Tru1I TTAA 1 cut(s) 755
Tru9I TTAA 1 cut(s) 755
TscAI CASTG 3 cut(s) 157, 712, 782
TseFI GTSAC 4 cut(s) 115, 229, 502, 628
TseI GCWGC 3 cut(s) 47, 476, 479
Tsp45I GTSAC 4 cut(s) 115, 229, 502, 628
TspDTI ATGAA 3 cut(s) 70, 685, 739
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 3 cut(s) 157, 712, 782
VneI GTGCAC 1 cut(s) 834
VpaK11BI GGWCC 3 cut(s) 352, 785, 816
XapI RAATTY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 826
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.