Pectate lyase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g00620 FvH4_6g02350 |
| rosa_chinensis | RchiOBHm_Chr3g0450111 RchiOBHm_Chr5g0000831 |
| rosa_laevigata | RLG00000025755 |
| rosa_multiflora | Rmu_co8353889.1_g000001 Rmu_sc0000255.1_g000012 Rmu_ssc0000116.1_g000065 |
| rosa_roxburghii | Rroxscaffold_6G00427880 |
| rosa_rugosa | Rorug02G0625600 Rorug04G0386900 |
| rosa_samantha | Rh3AG024800 Rh3BG025400 Rh3CG024300 Rh3DG025400 Rh5AG006800 Rh5CG007500 Rh5DG007500 |
| rosa_wichuraiana | Rw3G001980 Rw5G000700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1265 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 362 |
| Acc36I | ACCTGC | 1 cut(s) | 1265 |
| Acc65I | GGTACC | 1 cut(s) | 1032 |
| AccB1I | GGYRCC | 2 cut(s) | 1032, 1130 |
| AccII | CGCG | 3 cut(s) | 275, 318, 498 |
| AciI | CCGC | 6 cut(s) | 275, 316, 496, 498, 899, 1261 |
| AclWI | GGATC | 2 cut(s) | 193, 439 |
| AcoI | YGGCCR | 1 cut(s) | 493 |
| AcsI | RAATTY | 1 cut(s) | 214 |
| AcvI | CACGTG | 1 cut(s) | 688 |
| AfaI | GTAC | 2 cut(s) | 254, 1034 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 612, 874, 952 |
| AflIII | ACRYGT | 1 cut(s) | 687 |
| AgsI | TTSAA | 1 cut(s) | 1126 |
| AhlI | ACTAGT | 1 cut(s) | 1280 |
| AjnI | CCWGG | 1 cut(s) | 180 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 492, 524 |
| AluBI | AGCT | 8 cut(s) | 169, 451, 463, 477, 618, 1163, 1194, 1205 |
| AluI | AGCT | 8 cut(s) | 169, 451, 463, 477, 618, 1163, 1194, 1205 |
| Alw21I | GWGCWC | 3 cut(s) | 620, 1252, 1280 |
| Alw26I | GTCTC | 2 cut(s) | 139, 828 |
| Alw44I | GTGCAC | 2 cut(s) | 1248, 1276 |
| AlwI | GGATC | 2 cut(s) | 193, 439 |
| Ama87I | CYCGRG | 2 cut(s) | 113, 1189 |
| AoxI | GGCC | 7 cut(s) | 313, 493, 568, 727, 747, 1173, 1185 |
| ApaLI | GTGCAC | 2 cut(s) | 1248, 1276 |
| ApeKI | GCWGC | 1 cut(s) | 1241 |
| ApoI | RAATTY | 1 cut(s) | 214 |
| Asp718I | GGTACC | 1 cut(s) | 1032 |
| AspLEI | GCGC | 4 cut(s) | 270, 284, 327, 722 |
| AspS9I | GGNCC | 1 cut(s) | 381 |
| AsuC2I | CCSGG | 2 cut(s) | 211, 1037 |
| AsuHPI | GGTGA | 6 cut(s) | 454, 612, 622, 668, 940, 1246 |
| AvaI | CYCGRG | 2 cut(s) | 113, 1189 |
| AvaII | GGWCC | 1 cut(s) | 381 |
| BaeGI | GKGCMC | 2 cut(s) | 1252, 1280 |
| BanI | GGYRCC | 2 cut(s) | 1032, 1130 |
| BanII | GRGCYC | 1 cut(s) | 620 |
| BauI | CACGAG | 1 cut(s) | 731 |
| BbrPI | CACGTG | 1 cut(s) | 688 |
| Bbv12I | GWGCWC | 3 cut(s) | 620, 1252, 1280 |
| BbvI | GCAGC | 1 cut(s) | 1228 |
| BccI | CCATC | 4 cut(s) | 227, 494, 974, 998 |
| BceAI | ACGGC | 3 cut(s) | 347, 508, 742 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 104, 138 |
| BciT130I | CCWGG | 1 cut(s) | 182 |
| BclI | TGATCA | 1 cut(s) | 697 |
| BcnI | CCSGG | 2 cut(s) | 211, 1037 |
| BcoDI | GTCTC | 2 cut(s) | 139, 828 |
| BcuI | ACTAGT | 1 cut(s) | 1280 |
| BfaI | CTAG | 3 cut(s) | 348, 1281, 1288 |
| BfmI | CTRYAG | 2 cut(s) | 756, 940 |
| BfoI | RGCGCY | 2 cut(s) | 271, 328 |
| BfuAI | ACCTGC | 1 cut(s) | 1265 |
| BisI | GCNGC | 5 cut(s) | 316, 496, 899, 1242, 1261 |
| BlsI | GCNGC | 5 cut(s) | 317, 497, 900, 1243, 1262 |
| Bme1390I | CCNGG | 3 cut(s) | 182, 211, 1037 |
| Bme18I | GGWCC | 1 cut(s) | 381 |
| BmeT110I | CYCGRG | 2 cut(s) | 113, 1189 |
| BmgT120I | GGNCC | 1 cut(s) | 381 |
| BmiI | GGNNCC | 7 cut(s) | 382, 383, 502, 679, 1034, 1132, 1228 |
| BmrFI | CCNGG | 3 cut(s) | 182, 211, 1037 |
| BmsI | GCATC | 5 cut(s) | 153, 165, 349, 649, 876 |
| BpmI | CTGGAG | 4 cut(s) | 164, 664, 852, 1170 |
| Bpu10I | CCTNAGC | 2 cut(s) | 170, 1182 |
| BpuEI | CTTGAG | 2 cut(s) | 160, 437 |
| BpuMI | CCSGG | 2 cut(s) | 211, 1037 |
| BsaAI | YACGTR | 1 cut(s) | 688 |
| BsaI | GGTCTC | 1 cut(s) | 139 |
| BsaJI | CCNNGG | 7 cut(s) | 114, 129, 181, 496, 606, 946, 1218 |
| BsaWI | WCCGGW | 1 cut(s) | 1157 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 492, 522, 555, 585, 695, 725 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 612, 874, 952 |
| Bse1I | ACTGG | 2 cut(s) | 835, 1097 |
| Bse3DI | GCAATG | 2 cut(s) | 69, 513 |
| BseBI | CCWGG | 1 cut(s) | 182 |
| BseDI | CCNNGG | 7 cut(s) | 114, 129, 181, 496, 606, 946, 1218 |
| BseGI | GGATG | 4 cut(s) | 144, 188, 576, 742 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 612, 874, 952 |
| BseMI | GCAATG | 2 cut(s) | 69, 513 |
| BseMII | CTCAG | 2 cut(s) | 184, 1121 |
| BseNI | ACTGG | 2 cut(s) | 835, 1097 |
| BseRI | GAGGAG | 1 cut(s) | 628 |
| BseSI | GKGCMC | 2 cut(s) | 1252, 1280 |
| BseX3I | CGGCCG | 1 cut(s) | 493 |
| BseXI | GCAGC | 1 cut(s) | 1228 |
| Bsh1236I | CGCG | 3 cut(s) | 275, 318, 498 |
| Bsh1285I | CGRYCG | 1 cut(s) | 496 |
| BshFI | GGCC | 7 cut(s) | 315, 495, 570, 729, 749, 1175, 1187 |
| BshNI | GGYRCC | 2 cut(s) | 1032, 1130 |
| BsiEI | CGRYCG | 1 cut(s) | 496 |
| BsiHKAI | GWGCWC | 3 cut(s) | 620, 1252, 1280 |
| BsiHKCI | CYCGRG | 2 cut(s) | 113, 1189 |
| BsiSI | CCGG | 3 cut(s) | 210, 1037, 1158 |
| BslFI | GGGAC | 2 cut(s) | 394, 1085 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 612, 874, 952 |
| BsmAI | GTCTC | 2 cut(s) | 139, 828 |
| BsmFI | GGGAC | 2 cut(s) | 394, 1085 |
| BsmI | GAATGC | 1 cut(s) | 607 |
| BsnI | GGCC | 7 cut(s) | 315, 495, 570, 729, 749, 1175, 1187 |
| Bso31I | GGTCTC | 1 cut(s) | 139 |
| BsoBI | CYCGRG | 2 cut(s) | 113, 1189 |
| Bsp1286I | GDGCHC | 3 cut(s) | 620, 1252, 1280 |
| Bsp143I | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| Bsp19I | CCATGG | 3 cut(s) | 129, 606, 1218 |
| BspACI | CCGC | 6 cut(s) | 275, 316, 496, 498, 899, 1261 |
| BspANI | GGCC | 7 cut(s) | 315, 495, 570, 729, 749, 1175, 1187 |
| BspCNI | CTCAG | 2 cut(s) | 183, 1120 |
| BspFNI | CGCG | 3 cut(s) | 275, 318, 498 |
| BspHI | TCATGA | 1 cut(s) | 468 |
| BspLI | GGNNCC | 7 cut(s) | 382, 383, 502, 679, 1034, 1132, 1228 |
| BspMAI | CTGCAG | 1 cut(s) | 760 |
| BspMI | ACCTGC | 1 cut(s) | 1265 |
| BspPI | GGATC | 2 cut(s) | 193, 439 |
| BspT107I | GGYRCC | 2 cut(s) | 1032, 1130 |
| BspTNI | GGTCTC | 1 cut(s) | 139 |
| BsrDI | GCAATG | 2 cut(s) | 69, 513 |
| BsrI | ACTGG | 2 cut(s) | 835, 1097 |
| BssECI | CCNNGG | 7 cut(s) | 114, 129, 181, 496, 606, 946, 1218 |
| BssMI | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| BssSI | CACGAG | 1 cut(s) | 731 |
| BssT1I | CCWWGG | 3 cut(s) | 129, 606, 1218 |
| Bst2BI | CACGAG | 1 cut(s) | 731 |
| Bst2UI | CCWGG | 1 cut(s) | 182 |
| Bst4CI | ACNGT | 8 cut(s) | 100, 230, 624, 656, 856, 914, 950, 998 |
| Bst6I | CTCTTC | 1 cut(s) | 59 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 895 |
| BstBAI | YACGTR | 1 cut(s) | 688 |
| BstC8I | GCNNGC | 2 cut(s) | 529, 590 |
| BstDEI | CTNAG | 4 cut(s) | 170, 1107, 1182, 1206 |
| BstDSI | CCRYGG | 5 cut(s) | 129, 496, 606, 946, 1218 |
| BstEII | GGTNACC | 1 cut(s) | 1051 |
| BstF5I | GGATG | 4 cut(s) | 144, 188, 576, 742 |
| BstFNI | CGCG | 3 cut(s) | 275, 318, 498 |
| BstH2I | RGCGCY | 2 cut(s) | 271, 328 |
| BstHHI | GCGC | 4 cut(s) | 270, 284, 327, 722 |
| BstKTI | GATC | 4 cut(s) | 188, 447, 700, 1024 |
| BstMAI | GTCTC | 2 cut(s) | 139, 828 |
| BstMBI | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| BstMCI | CGRYCG | 1 cut(s) | 496 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 281, 324, 524, 726, 755, 895, 907, 1160, 1247 |
| BstNI | CCWGG | 1 cut(s) | 182 |
| BstNSI | RCATGY | 2 cut(s) | 531, 847 |
| BstPI | GGTNACC | 1 cut(s) | 1051 |
| BstSCI | CCNGG | 3 cut(s) | 180, 209, 1035 |
| BstSFI | CTRYAG | 2 cut(s) | 756, 940 |
| BstSLI | GKGCMC | 2 cut(s) | 1252, 1280 |
| BstUI | CGCG | 3 cut(s) | 275, 318, 498 |
| BstV1I | GCAGC | 1 cut(s) | 1228 |
| BstZI | CGGCCG | 1 cut(s) | 493 |
| BsuRI | GGCC | 7 cut(s) | 315, 495, 570, 729, 749, 1175, 1187 |
| BtgI | CCRYGG | 5 cut(s) | 129, 496, 606, 946, 1218 |
| BtgZI | GCGATG | 1 cut(s) | 250 |
| BtsCI | GGATG | 4 cut(s) | 144, 188, 576, 742 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 3 cut(s) | 12, 339, 1003 |
| BveI | ACCTGC | 1 cut(s) | 1265 |
| Cac8I | GCNNGC | 2 cut(s) | 529, 590 |
| CciI | TCATGA | 1 cut(s) | 468 |
| CfoI | GCGC | 4 cut(s) | 270, 284, 327, 722 |
| Cfr13I | GGNCC | 1 cut(s) | 381 |
| Cfr42I | CCGCGG | 1 cut(s) | 499 |
| Csp6I | GTAC | 2 cut(s) | 253, 1033 |
| CviQI | GTAC | 2 cut(s) | 253, 1033 |
| DdeI | CTNAG | 4 cut(s) | 170, 1107, 1182, 1206 |
| DpnI | GATC | 4 cut(s) | 187, 446, 699, 1023 |
| DpnII | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 362 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 362 |
| EaeI | YGGCCR | 1 cut(s) | 493 |
| EagI | CGGCCG | 1 cut(s) | 493 |
| Eam1104I | CTCTTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 1 cut(s) | 59 |
| Ecl136II | GAGCTC | 1 cut(s) | 618 |
| EclXI | CGGCCG | 1 cut(s) | 493 |
| Eco130I | CCWWGG | 3 cut(s) | 129, 606, 1218 |
| Eco147I | AGGCCT | 2 cut(s) | 1175, 1187 |
| Eco24I | GRGCYC | 1 cut(s) | 620 |
| Eco31I | GGTCTC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 1 cut(s) | 381 |
| Eco52I | CGGCCG | 1 cut(s) | 493 |
| Eco53kI | GAGCTC | 1 cut(s) | 618 |
| Eco72I | CACGTG | 1 cut(s) | 688 |
| Eco88I | CYCGRG | 2 cut(s) | 113, 1189 |
| Eco91I | GGTNACC | 1 cut(s) | 1051 |
| EcoICRI | GAGCTC | 1 cut(s) | 618 |
| EcoO109I | RGGNCCY | 1 cut(s) | 381 |
| EcoO65I | GGTNACC | 1 cut(s) | 1051 |
| EcoRI | GAATTC | 1 cut(s) | 214 |
| EcoRII | CCWGG | 1 cut(s) | 180 |
| EcoT14I | CCWWGG | 3 cut(s) | 129, 606, 1218 |
| EcoT22I | ATGCAT | 1 cut(s) | 533 |
| EcoT38I | GRGCYC | 1 cut(s) | 620 |
| ErhI | CCWWGG | 3 cut(s) | 129, 606, 1218 |
| FaqI | GGGAC | 2 cut(s) | 394, 1085 |
| FauNDI | CATATG | 1 cut(s) | 1272 |
| FbaI | TGATCA | 1 cut(s) | 697 |
| Fnu4HI | GCNGC | 5 cut(s) | 316, 496, 899, 1242, 1261 |
| FokI | GGATG | 4 cut(s) | 131, 175, 563, 749 |
| FriOI | GRGCYC | 1 cut(s) | 620 |
| Fsp4HI | GCNGC | 5 cut(s) | 316, 496, 899, 1242, 1261 |
| FspBI | CTAG | 3 cut(s) | 348, 1281, 1288 |
| GlaI | GCGC | 4 cut(s) | 269, 283, 326, 721 |
| GluI | GCNGC | 5 cut(s) | 316, 496, 899, 1242, 1261 |
| GsuI | CTGGAG | 4 cut(s) | 164, 664, 852, 1170 |
| HaeII | RGCGCY | 2 cut(s) | 271, 328 |
| HaeIII | GGCC | 7 cut(s) | 315, 495, 570, 729, 749, 1175, 1187 |
| HapII | CCGG | 3 cut(s) | 210, 1037, 1158 |
| HhaI | GCGC | 4 cut(s) | 270, 284, 327, 722 |
| Hin6I | GCGC | 4 cut(s) | 268, 282, 325, 720 |
| HinP1I | GCGC | 4 cut(s) | 268, 282, 325, 720 |
| HincII | GTYRAC | 1 cut(s) | 367 |
| HindII | GTYRAC | 1 cut(s) | 367 |
| HinfI | GANTC | 4 cut(s) | 242, 344, 821, 1040 |
| HpaII | CCGG | 3 cut(s) | 210, 1037, 1158 |
| HphI | GGTGA | 6 cut(s) | 454, 612, 622, 668, 940, 1246 |
| Hpy166II | GTNNAC | 5 cut(s) | 367, 511, 931, 1250, 1278 |
| Hpy188I | TCNGA | 3 cut(s) | 264, 409, 1171 |
| Hpy188III | TCNNGA | 5 cut(s) | 379, 469, 550, 1123, 1149 |
| Hpy8I | GTNNAC | 5 cut(s) | 367, 511, 931, 1250, 1278 |
| Hpy99I | CGWCG | 5 cut(s) | 227, 323, 359, 494, 728 |
| HpyAV | CCTTC | 3 cut(s) | 395, 872, 995 |
| HpyCH4III | ACNGT | 8 cut(s) | 100, 230, 624, 656, 856, 914, 950, 998 |
| HpyCH4IV | ACGT | 2 cut(s) | 546, 687 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 281, 324, 524, 726, 755, 895, 907, 1160, 1247 |
| HpyF3I | CTNAG | 4 cut(s) | 170, 1107, 1182, 1206 |
| HpySE526I | ACGT | 2 cut(s) | 546, 687 |
| HspAI | GCGC | 4 cut(s) | 268, 282, 325, 720 |
| KflI | GGGWCCC | 1 cut(s) | 381 |
| KpnI | GGTACC | 1 cut(s) | 1036 |
| Ksp22I | TGATCA | 1 cut(s) | 697 |
| KspI | CCGCGG | 1 cut(s) | 499 |
| Kzo9I | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| LmnI | GCTCC | 7 cut(s) | 460, 500, 615, 683, 1151, 1160, 1226 |
| Lsp1109I | GCAGC | 1 cut(s) | 1228 |
| LweI | GCATC | 5 cut(s) | 153, 165, 349, 649, 876 |
| MaeI | CTAG | 3 cut(s) | 348, 1281, 1288 |
| MaeII | ACGT | 2 cut(s) | 546, 687 |
| MalI | GATC | 4 cut(s) | 187, 446, 699, 1023 |
| MboI | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| MboII | GAAGA | 3 cut(s) | 46, 1099, 1206 |
| MfeI | CAATTG | 2 cut(s) | 247, 306 |
| MhlI | GDGCHC | 3 cut(s) | 620, 1252, 1280 |
| MluCI | AATT | 6 cut(s) | 84, 214, 247, 306, 775, 1096 |
| MlyI | GAGTC | 3 cut(s) | 236, 338, 815 |
| MmeI | TCCRAC | 4 cut(s) | 617, 738, 1059, 1204 |
| Mph1103I | ATGCAT | 1 cut(s) | 533 |
| MseI | TTAA | 2 cut(s) | 21, 372 |
| MslI | CAYNNNNRTG | 5 cut(s) | 199, 579, 792, 795, 848 |
| MspA1I | CMGCKG | 1 cut(s) | 498 |
| MspI | CCGG | 3 cut(s) | 210, 1037, 1158 |
| MspR9I | CCNGG | 3 cut(s) | 182, 211, 1037 |
| MunI | CAATTG | 2 cut(s) | 247, 306 |
| Mva1269I | GAATGC | 1 cut(s) | 607 |
| MvaI | CCWGG | 1 cut(s) | 182 |
| MvnI | CGCG | 3 cut(s) | 275, 318, 498 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 281, 324, 524, 726, 755, 895, 907, 1160, 1247 |
| NciI | CCSGG | 2 cut(s) | 211, 1037 |
| NcoI | CCATGG | 3 cut(s) | 129, 606, 1218 |
| NdeI | CATATG | 1 cut(s) | 1272 |
| NdeII | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| NlaIV | GGNNCC | 7 cut(s) | 382, 383, 502, 679, 1034, 1132, 1228 |
| NmuCI | GTSAC | 8 cut(s) | 239, 337, 350, 434, 547, 624, 812, 850 |
| NsiI | ATGCAT | 1 cut(s) | 533 |
| NspI | RCATGY | 2 cut(s) | 531, 847 |
| PaeI | GCATGC | 1 cut(s) | 531 |
| PaeR7I | CTCGAG | 1 cut(s) | 1189 |
| PagI | TCATGA | 1 cut(s) | 468 |
| PaqCI | CACCTGC | 1 cut(s) | 1265 |
| PceI | AGGCCT | 2 cut(s) | 1175, 1187 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 360 |
| PctI | GAATGC | 1 cut(s) | 607 |
| PfeI | GAWTC | 1 cut(s) | 1040 |
| PkrI | GCNGC | 5 cut(s) | 317, 497, 900, 1243, 1262 |
| PleI | GAGTC | 3 cut(s) | 236, 338, 815 |
| PmaCI | CACGTG | 1 cut(s) | 688 |
| PmlI | CACGTG | 1 cut(s) | 688 |
| PpsI | GAGTC | 3 cut(s) | 236, 338, 815 |
| Ppu21I | YACGTR | 1 cut(s) | 688 |
| PpuMI | RGGWCCY | 1 cut(s) | 381 |
| Psp124BI | GAGCTC | 1 cut(s) | 620 |
| Psp5II | RGGWCCY | 1 cut(s) | 381 |
| Psp6I | CCWGG | 1 cut(s) | 180 |
| PspCI | CACGTG | 1 cut(s) | 688 |
| PspEI | GGTNACC | 1 cut(s) | 1051 |
| PspGI | CCWGG | 1 cut(s) | 180 |
| PspN4I | GGNNCC | 7 cut(s) | 382, 383, 502, 679, 1034, 1132, 1228 |
| PspPI | GGNCC | 1 cut(s) | 381 |
| PspPPI | RGGWCCY | 1 cut(s) | 381 |
| PspXI | VCTCGAGB | 1 cut(s) | 1189 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 923, 955 |
| PstI | CTGCAG | 1 cut(s) | 760 |
| RsaI | GTAC | 2 cut(s) | 254, 1034 |
| RsaNI | GTAC | 2 cut(s) | 253, 1033 |
| RseI | CAYNNNNRTG | 5 cut(s) | 199, 579, 792, 795, 848 |
| SacI | GAGCTC | 1 cut(s) | 620 |
| SacII | CCGCGG | 1 cut(s) | 499 |
| SaqAI | TTAA | 2 cut(s) | 21, 372 |
| SatI | GCNGC | 5 cut(s) | 316, 496, 899, 1242, 1261 |
| Sau3AI | GATC | 4 cut(s) | 185, 444, 697, 1021 |
| Sau96I | GGNCC | 1 cut(s) | 381 |
| SchI | GAGTC | 3 cut(s) | 236, 338, 815 |
| ScrFI | CCNGG | 3 cut(s) | 182, 211, 1037 |
| SduI | GDGCHC | 3 cut(s) | 620, 1252, 1280 |
| SfaNI | GCATC | 5 cut(s) | 153, 165, 349, 649, 876 |
| SfcI | CTRYAG | 2 cut(s) | 756, 940 |
| Sfr274I | CTCGAG | 1 cut(s) | 1189 |
| Sfr303I | CCGCGG | 1 cut(s) | 499 |
| SgrBI | CCGCGG | 1 cut(s) | 499 |
| SinI | GGWCC | 1 cut(s) | 381 |
| SlaI | CTCGAG | 1 cut(s) | 1189 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 199, 579, 792, 795, 848 |
| SmlI | CTYRAG | 3 cut(s) | 139, 452, 1189 |
| SmoI | CTYRAG | 3 cut(s) | 139, 452, 1189 |
| SpeI | ACTAGT | 1 cut(s) | 1280 |
| SphI | GCATGC | 1 cut(s) | 531 |
| Sse9I | AATT | 6 cut(s) | 84, 214, 247, 306, 775, 1096 |
| SseBI | AGGCCT | 2 cut(s) | 1175, 1187 |
| SsiI | CCGC | 6 cut(s) | 275, 316, 496, 498, 899, 1261 |
| SspMI | CTAG | 3 cut(s) | 348, 1281, 1288 |
| SstI | GAGCTC | 1 cut(s) | 620 |
| StuI | AGGCCT | 2 cut(s) | 1175, 1187 |
| StyD4I | CCNGG | 3 cut(s) | 180, 209, 1035 |
| StyI | CCWWGG | 3 cut(s) | 129, 606, 1218 |
| TaaI | ACNGT | 8 cut(s) | 100, 230, 624, 656, 856, 914, 950, 998 |
| TaiI | ACGT | 2 cut(s) | 549, 690 |
| TaqI | TCGA | 7 cut(s) | 102, 159, 222, 489, 668, 1043, 1190 |
| TasI | AATT | 6 cut(s) | 84, 214, 247, 306, 775, 1096 |
| TauI | GCSGC | 4 cut(s) | 318, 498, 901, 1263 |
| TfiI | GAWTC | 1 cut(s) | 1040 |
| Tru1I | TTAA | 2 cut(s) | 21, 372 |
| Tru9I | TTAA | 2 cut(s) | 21, 372 |
| TscAI | CASTG | 3 cut(s) | 12, 346, 1003 |
| TseFI | GTSAC | 8 cut(s) | 239, 337, 350, 434, 547, 624, 812, 850 |
| TseI | GCWGC | 1 cut(s) | 1241 |
| Tsp45I | GTSAC | 8 cut(s) | 239, 337, 350, 434, 547, 624, 812, 850 |
| TspDTI | ATGAA | 3 cut(s) | 58, 485, 537 |
| TspGWI | ACGGA | 1 cut(s) | 1134 |
| TspRI | CASTG | 3 cut(s) | 12, 346, 1003 |
| VneI | GTGCAC | 2 cut(s) | 1248, 1276 |
| VpaK11BI | GGWCC | 1 cut(s) | 381 |
| XapI | RAATTY | 1 cut(s) | 214 |
| XceI | RCATGY | 2 cut(s) | 531, 847 |
| XhoI | CTCGAG | 1 cut(s) | 1189 |
| XspI | CTAG | 3 cut(s) | 348, 1281, 1288 |
| Zsp2I | ATGCAT | 1 cut(s) | 533 |