Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000161.1

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

75 .. 1327

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggaaaaggagcaaacttggtttgggaagctaacactttcattcctctacgacatgtcatcggaacccataatcaagatttcatttttcctattccttcatttagccactaaccaaacagagctccgctccccacacaatcaaaatccctcaaaacagattgaagataaagccgtagcaaatgaaaacaatccgaaaaaatcaaagctatttgaacccgataataatgataacgataagcgatcgatggtagggtttttcgaaggctaccttgtctgcccgactctctctgaaacgggttttgattggaaaagatgggcagtgagatcggacagtcgatgttgctacgcctgtatctcacagcttgatagaaacgacacccacccgcgcattgctgcgggatttaacaaaacccacgggtatgggtatccacgggcgcggcgggattggcagcggtggtggctgagtcctacacgcacatcttcttcacgaactcgatggccaccgacaaggtgtaccctcgactggagtcatcgacttcgccggctccgacgtcttccacatggtcggaggatgcaccgccgcactgatgactctcttcaggaaacgaacatctgcaacggcctcctcggtggcttcgctgccatcatctctggctgctccttcatcgagccctgcatcgccatcatctacagcttcgtcgccgccgtcgtcttagtctcctgcaacaaattcgctgagaaggtcaagtacgacgaccccttggaggcggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

258

Amino Acids

29.92

Weight (kDa)

9.25

Isoelectric Point (pI)

68.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	196 - 257	5.2e-11	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	556
AccBSI	CCGCTC	1 cut(s)	129
AccII	CGCG	2 cut(s)	388, 439
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	2 cut(s)	517, 752
AfiI	CCNNNNNNNGG	2 cut(s)	525, 766
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	164, 215
AluBI	AGCT	5 cut(s)	31, 124, 208, 364, 696
AluI	AGCT	5 cut(s)	31, 124, 208, 364, 696
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	724
AoxI	GGCC	2 cut(s)	500, 622
ApeKI	GCWGC	4 cut(s)	395, 451, 641, 657
ApoI	RAATTY	1 cut(s)	731
AspLEI	GCGC	2 cut(s)	390, 439
AsuII	TTCGAA	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	337, 370
BalI	TGGCCA	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	126, 675
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	382, 463, 628, 644
BccI	CCATC	5 cut(s)	241, 309, 492, 653, 692
BceAI	ACGGC	3 cut(s)	158, 637, 692
BcgI	CGANNNNNNTGC	4 cut(s)	309, 343, 715, 749
BciVI	GTATCC	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	724
BfmI	CTRYAG	1 cut(s)	691
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	8 cut(s)	396, 440, 452, 583, 642, 658, 705, 771
BlsI	GCNGC	8 cut(s)	397, 441, 453, 584, 643, 659, 706, 772
BmiI	GGNNCC	2 cut(s)	66, 548
BmsI	GCATC	2 cut(s)	564, 687
BoxI	GACNNNNGTC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	547
Bpu14I	TTCGAA	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	415, 431, 628, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 766
Bse118I	RCCGGY	1 cut(s)	543
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	390
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	4 cut(s)	415, 431, 628, 762
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	525, 766
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	455, 729
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	4 cut(s)	382, 463, 628, 644
Bsh1236I	CGCG	2 cut(s)	388, 439
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	502, 624
BshVI	ATCGAT	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	525, 766
BsmAI	GTCTC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	502, 624
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	126, 675
Bsp143I	GATC	2 cut(s)	242, 326
BspANI	GGCC	2 cut(s)	502, 624
BspCNI	CTCAG	2 cut(s)	456, 730
BspDI	ATCGAT	1 cut(s)	245
BspFNI	CGCG	2 cut(s)	388, 439
BspLI	GGNNCC	2 cut(s)	66, 548
BspT104I	TTCGAA	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	543
BssECI	CCNNGG	4 cut(s)	415, 431, 628, 762
BssMI	GATC	2 cut(s)	242, 326
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	762
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	553
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	4 cut(s)	464, 715, 738, 774
BstDSI	CCRYGG	2 cut(s)	415, 431
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	2 cut(s)	388, 439
BstHHI	GCGC	2 cut(s)	390, 439
BstKTI	GATC	2 cut(s)	245, 329
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	2 cut(s)	242, 326
BstMCI	CGRYCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	448, 460
BstNSI	RCATGY	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	691
BstUI	CGCG	2 cut(s)	388, 439
BstV1I	GCAGC	4 cut(s)	382, 463, 628, 644
BstV2I	GAAGAC	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	502, 624
BsuTUI	ATCGAT	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	415, 431
BtgZI	GCGATG	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 585
Cac8I	GCNNGC	1 cut(s)	545
CfoI	GCGC	2 cut(s)	390, 439
Cfr10I	RCCGGY	1 cut(s)	543
ClaI	ATCGAT	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	516, 751
CviAII	CATG	2 cut(s)	55, 563
CviQI	GTAC	2 cut(s)	516, 751
DdeI	CTNAG	4 cut(s)	464, 715, 738, 774
DpnI	GATC	2 cut(s)	244, 328
DpnII	GATC	2 cut(s)	242, 326
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	762
Eco24I	GRGCYC	2 cut(s)	126, 675
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	762
EcoT38I	GRGCYC	2 cut(s)	126, 675
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	2 cut(s)	58, 566
FaiI	YATR	4 cut(s)	56, 71, 423, 564
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	54, 562
FauI	CCCGC	3 cut(s)	391, 393, 435
Fnu4HI	GCNGC	8 cut(s)	396, 440, 452, 583, 642, 658, 705, 771
FokI	GGATG	1 cut(s)	586
FriOI	GRGCYC	2 cut(s)	126, 675
Fsp4HI	GCNGC	8 cut(s)	396, 440, 452, 583, 642, 658, 705, 771
GlaI	GCGC	2 cut(s)	389, 438
GluI	GCNGC	8 cut(s)	396, 440, 452, 583, 642, 658, 705, 771
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	502, 624
HapII	CCGG	1 cut(s)	544
HhaI	GCGC	2 cut(s)	390, 439
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	2 cut(s)	58, 566
Hin6I	GCGC	2 cut(s)	388, 437
HinP1I	GCGC	2 cut(s)	388, 437
HinfI	GANTC	4 cut(s)	283, 466, 529, 593
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	6 cut(s)	64, 195, 292, 331, 551, 570
Hpy188III	TCNNGA	3 cut(s)	76, 489, 602
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	4 cut(s)	555, 704, 713, 758
HpyAV	CCTTC	4 cut(s)	107, 257, 673, 736
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	4 cut(s)	577, 618, 678, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	448, 460
HpyF3I	CTNAG	4 cut(s)	464, 715, 738, 774
HpySE526I	ACGT	1 cut(s)	553
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	58, 566
HspAI	GCGC	2 cut(s)	388, 437
KroI	GCCGGC	1 cut(s)	543
KroNI	GCCGGC	1 cut(s)	545
Kzo9I	GATC	2 cut(s)	242, 326
LmnI	GCTCC	5 cut(s)	10, 129, 134, 552, 665
LpnPI	CCDG	7 cut(s)	364, 511, 557, 587, 639, 688, 736
Lsp1109I	GCAGC	4 cut(s)	382, 463, 628, 644
LweI	GCATC	2 cut(s)	564, 687
MaeII	ACGT	1 cut(s)	553
MalI	GATC	2 cut(s)	244, 328
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	2 cut(s)	242, 326
MboII	GAAGA	5 cut(s)	176, 474, 477, 548, 590
MhlI	GDGCHC	2 cut(s)	126, 675
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	1 cut(s)	731
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	4 cut(s)	277, 475, 538, 587
MmeI	TCCRAC	2 cut(s)	548, 574
MnlI	CCTC	7 cut(s)	56, 160, 530, 564, 635, 638, 760
Mox20I	TGGCCA	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	1 cut(s)	544
MvnI	CGCG	2 cut(s)	388, 439
MwoI	GCNNNNNNNGC	2 cut(s)	448, 460
NaeI	GCCGGC	1 cut(s)	545
NdeII	GATC	2 cut(s)	242, 326
NgoMIV	GCCGGC	1 cut(s)	543
NlaIII	CATG	2 cut(s)	58, 566
NlaIV	GGNNCC	2 cut(s)	66, 548
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	261
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	3 cut(s)	547, 705, 708
PdiI	GCCGGC	1 cut(s)	545
PkrI	GCNGC	8 cut(s)	397, 441, 453, 584, 643, 659, 706, 772
Ple19I	CGATCG	1 cut(s)	245
PleI	GAGTC	4 cut(s)	277, 474, 537, 587
PpsI	GAGTC	4 cut(s)	277, 474, 537, 587
PscI	ACATGT	1 cut(s)	54
PshAI	GACNNNNGTC	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	66, 548
PvuI	CGATCG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	517, 752
RsaNI	GTAC	2 cut(s)	516, 751
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	396, 440, 452, 583, 642, 658, 705, 771
Sau3AI	GATC	2 cut(s)	242, 326
SchI	GAGTC	4 cut(s)	277, 475, 538, 587
SduI	GDGCHC	2 cut(s)	126, 675
SetI	ASST	9 cut(s)	33, 126, 210, 273, 366, 515, 556, 698, 747
SfaNI	GCATC	2 cut(s)	564, 687
SfcI	CTRYAG	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	1 cut(s)	731
SstI	GAGCTC	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	7 cut(s)	245, 261, 337, 496, 522, 535, 669
TasI	AATT	1 cut(s)	731
TauI	GCSGC	4 cut(s)	442, 585, 707, 773
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	327, 592
TseI	GCWGC	4 cut(s)	395, 451, 641, 657
TspDTI	ATGAA	5 cut(s)	30, 72, 89, 198, 655
TspRI	CASTG	2 cut(s)	327, 592
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	1 cut(s)	58
ZraI	GACGTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.