Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000161.1

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

6042 .. 6872

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgggtatccacgggtacccgttccatttgggtaaaaaaattcgggtatttgtagtagtaaattacctatggggtaatgggtgttggatacccactcaggcgcggcgggattggcagcggtggtggctgagtcctacacgcacatcttcttcacgaactcgatggccaccgacaaggtgtaccctcgactggagtcatcgacttcgccggctccgacgtcttccacatggtcggaggatgcaccgccgcactgatgactctcttcaggaaacgaacatctgcaacggcctcctcggtggcttcgctgccatcatctctggctgctccttcatcgagccctgcatcgccatcatctacagcttcgtcgccgccgtcgtcttagtctcctgcaacaaattcgctgagaaggtcaagtacgacgaccccttggaggcggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

146

Amino Acids

16.93

Weight (kDa)

10.13

Isoelectric Point (pI)

71.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	84 - 145	1.6e-11	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AccII	CGCG	1 cut(s)	103
AciI	CCGC	7 cut(s)	103, 106, 118, 244, 247, 369, 434
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	39, 395
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	3 cut(s)	17, 181, 416
AfiI	CCNNNNNNNGG	2 cut(s)	189, 430
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	164, 286
ApeKI	GCWGC	3 cut(s)	115, 305, 321
ApoI	RAATTY	2 cut(s)	39, 395
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	339
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	127, 292, 308
BccI	CCATC	3 cut(s)	156, 317, 356
BceAI	ACGGC	2 cut(s)	301, 356
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciVI	GTATCC	2 cut(s)	17, 81
BcoDI	GTCTC	1 cut(s)	388
BfmI	CTRYAG	1 cut(s)	355
BfuI	GTATCC	2 cut(s)	17, 81
BisI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
BlsI	GCNGC	7 cut(s)	105, 117, 248, 307, 323, 370, 436
BmiI	GGNNCC	2 cut(s)	17, 212
BmsI	GCATC	2 cut(s)	228, 351
BoxI	GACNNNNGTC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	10, 292, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 430
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	10, 292, 426
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	189, 430
BseMII	CTCAG	3 cut(s)	110, 119, 393
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	127, 292, 308
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	166, 288
BshNI	GGYRCC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	189, 430
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	166, 288
Bsp1286I	GDGCHC	1 cut(s)	339
BspACI	CCGC	7 cut(s)	103, 106, 118, 244, 247, 369, 434
BspANI	GGCC	2 cut(s)	166, 288
BspCNI	CTCAG	3 cut(s)	109, 120, 394
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	17, 212
BspT107I	GGYRCC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	10, 292, 426
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	5 cut(s)	96, 128, 379, 402, 438
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 124
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	127, 292, 308
BstV2I	GAAGAC	1 cut(s)	212
BsuI	GTATCC	2 cut(s)	17, 81
BsuRI	GGCC	2 cut(s)	166, 288
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	16, 180, 415
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	127, 166, 211, 288, 300, 321, 337, 360, 437
CviKI_1	RGCY	9 cut(s)	127, 166, 211, 288, 300, 321, 337, 360, 437
CviQI	GTAC	3 cut(s)	16, 180, 415
DdeI	CTNAG	5 cut(s)	96, 128, 379, 402, 438
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	230
FaiI	YATR	2 cut(s)	70, 228
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	166, 288
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	3 cut(s)	130, 193, 257
HpaII	CCGG	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	2 cut(s)	215, 234
Hpy188III	TCNNGA	2 cut(s)	153, 266
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	4 cut(s)	219, 368, 377, 422
HpyAV	CCTTC	2 cut(s)	337, 400
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	241, 282, 342, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 124
HpyF3I	CTNAG	5 cut(s)	96, 128, 379, 402, 438
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	216, 329
LpnPI	CCDG	7 cut(s)	83, 175, 221, 251, 303, 352, 400
Lsp1109I	GCAGC	3 cut(s)	127, 292, 308
LweI	GCATC	2 cut(s)	228, 351
MaeII	ACGT	1 cut(s)	217
MboII	GAAGA	4 cut(s)	138, 141, 212, 254
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	3 cut(s)	39, 61, 395
MluNI	TGGCCA	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	139, 202, 251
MmeI	TCCRAC	3 cut(s)	65, 212, 238
MnlI	CCTC	5 cut(s)	194, 228, 299, 302, 424
Mox20I	TGGCCA	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	166
Msp20I	TGGCCA	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	112, 124
NaeI	GCCGGC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	17, 212
PcsI	WCGNNNNNNNCGW	3 cut(s)	211, 369, 372
PdiI	GCCGGC	1 cut(s)	209
PkrI	GCNGC	7 cut(s)	105, 117, 248, 307, 323, 370, 436
PleI	GAGTC	3 cut(s)	138, 201, 251
PpsI	GAGTC	3 cut(s)	138, 201, 251
PshAI	GACNNNNGTC	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	17, 212
RsaI	GTAC	3 cut(s)	17, 181, 416
RsaNI	GTAC	3 cut(s)	16, 180, 415
SatI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
SchI	GAGTC	3 cut(s)	139, 202, 251
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	5 cut(s)	69, 179, 220, 362, 411
SfaNI	GCATC	2 cut(s)	228, 351
SfcI	CTRYAG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	39, 61, 395
SsiI	CCGC	7 cut(s)	103, 106, 118, 244, 247, 369, 434
StyI	CCWWGG	1 cut(s)	426
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	4 cut(s)	160, 186, 199, 333
TasI	AATT	3 cut(s)	39, 61, 395
TauI	GCSGC	4 cut(s)	106, 249, 371, 437
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	3 cut(s)	115, 305, 321
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	39, 395
ZraI	GACGTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.