Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0012860

Physical Location & Seq

Genomic Coordinates Reverse (-)

3804 .. 5345

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000233.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgtgttcctctaaaccaaaattgcagcaaaatcctagtgttactctaacaacacctaaaaccaatcgccgtttggttcttcagccgactggtaaccaatttccaagcttggaacaaaagaagtttctcaaaaagacctcccatgaatcccttattccacctcctttgctatcacagaaaactaagcccgcaatttctcctcccatctctcccaagttaccttcgcctcgaccaccagcactgaagagaggaaaagaccataatgagctcaattctagtcttgagaagttaattctcacacctaagtcaacaaccaagttgactagttcagtgaaaaagtcaaagagatcaagtgttgcaggtgcagcttctgctgaaaatgtaatgaaaaatatagcatctttgatagtagaggcacctggaagcatagcagctgcaaggagagagcaagttgcaacaatgcaagaacaacgaaagttgagaattgcgcattatggaagaacaaagtctgcaaagtttgaagggaaagtagtgcctcttgatacctcatccaccaatgttgaacaaaggagatgcagttttatcacaccaagttcagaccctctgtatgttgcttaccatgatcaagaatggggagttcctgttcatgatgacaatttgttgcttgaattgctactgttgaccagtgctcaagtaggatcagattggagctcggtcctgaggaaaaggcaggctttgagggaggcattttcaggttttgatgcagaaattgtggctaagtttaatgaaaagaagataacttcagtaagtgctgatactggtactgatataagcttgatcagaggagttgttgacaatgctaaaagaattcttgagattaaaagggaaactgggtcatttgacaactacttgtggggatttgtgaatcacaagccaatttccacccagtacaagtcatgccacaagatccctgtgaagacctccaaatcagagtccataagcaaagccatggtgaagaagggtttcaggtttgtgggccccactgtgattcactccttcatgcaagctgctggcctcactaatgaccacttgatcacttgctcaaggcaccaactatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Adenine_glyco

Protein Analysis

372

Amino Acids

41.11

Weight (kDa)

10.01

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44680
fragaria_vesca	FvH4_3g13300
malus_domestica	MD05G1243000.v1.1 MD10G1225100.v1.1
prunus_persica	Prupe.4G120400_v2.0.a1
pyrus_communis	pycom05g21960 pycom10g18890
rosa_chinensis	RchiOBHm_Chr5g0021771
rosa_laevigata	RLG00000032626
rosa_multiflora	Rmu_ssc0000233.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056940
rosa_rugosa	Rorug05G0069300 Rorug05G0069400
rosa_samantha	Rh5AG157900 Rh5BG157400 Rh5CG171600 Rh5DG157700
rosa_wichuraiana	Rw5G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc16I	TGCGCA	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	415, 1107
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	2 cut(s)	706, 961
AcsI	RAATTY	1 cut(s)	867
AcuI	CTGAAG	3 cut(s)	65, 263, 786
AfaI	GTAC	2 cut(s)	823, 950
AgsI	TTSAA	3 cut(s)	521, 563, 668
AhlI	ACTAGT	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	418
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	7 cut(s)	108, 268, 368, 434, 711, 834, 1067
AluI	AGCT	7 cut(s)	108, 268, 368, 434, 711, 834, 1067
Alw21I	GWGCWC	3 cut(s)	270, 691, 713
AlwI	GGATC	2 cut(s)	706, 961
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	1036, 1072
ApaI	GGGCCC	1 cut(s)	1040
ApeKI	GCWGC	5 cut(s)	25, 365, 431, 434, 1067
ApoI	RAATTY	1 cut(s)	867
Asp700I	GAANNNNTTC	1 cut(s)	1022
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	715, 1036, 1037
AsuHPI	GGTGA	1 cut(s)	1024
AvaII	GGWCC	1 cut(s)	715
AxyI	CCTNAGG	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	1040
BanI	GGYRCC	2 cut(s)	415, 1107
BanII	GRGCYC	3 cut(s)	270, 713, 1040
BbsI	GAAGAC	1 cut(s)	983
Bbv12I	GWGCWC	3 cut(s)	270, 691, 713
BbvI	GCAGC	5 cut(s)	37, 377, 421, 443, 1054
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	3 cut(s)	622, 837, 1092
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	3 cut(s)	36, 276, 324
BfmI	CTRYAG	1 cut(s)	1115
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	5 cut(s)	26, 366, 432, 435, 1068
BlsI	GCNGC	5 cut(s)	27, 367, 433, 436, 1069
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	3 cut(s)	715, 1036, 1037
BmiI	GGNNCC	4 cut(s)	417, 1038, 1039, 1109
BmrFI	CCNGG	1 cut(s)	420
BmrI	ACTGGG	2 cut(s)	900, 940
BmsI	GCATC	3 cut(s)	407, 563, 751
BmuI	ACTGGG	2 cut(s)	900, 940
BpiI	GAAGAC	1 cut(s)	983
BpuEI	CTTGAG	4 cut(s)	302, 675, 893, 1087
BsaJI	CCNNGG	1 cut(s)	1008
BsaXI	ACNNNNNCTCC	4 cut(s)	562, 592, 627, 657
Bse1I	ACTGG	5 cut(s)	94, 684, 823, 895, 946
Bse21I	CCTNAGG	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	1008
BseGI	GGATG	1 cut(s)	548
BseMII	CTCAG	1 cut(s)	710
BseNI	ACTGG	5 cut(s)	94, 684, 823, 895, 946
BseRI	GAGGAG	2 cut(s)	189, 858
BseSI	GKGCMC	1 cut(s)	1040
BseXI	GCAGC	5 cut(s)	37, 377, 421, 443, 1054
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	1038, 1074
BshNI	GGYRCC	2 cut(s)	415, 1107
BsiHKAI	GWGCWC	3 cut(s)	270, 691, 713
BsnI	GGCC	2 cut(s)	1038, 1074
Bsp120I	GGGCCC	1 cut(s)	1036
Bsp1286I	GDGCHC	4 cut(s)	270, 691, 713, 1040
Bsp143I	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
Bsp19I	CCATGG	1 cut(s)	1008
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	2 cut(s)	1038, 1074
BspCNI	CTCAG	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	4 cut(s)	417, 1038, 1039, 1109
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	706, 961
BspT107I	GGYRCC	2 cut(s)	415, 1107
BsrI	ACTGG	5 cut(s)	94, 684, 823, 895, 946
BssECI	CCNNGG	1 cut(s)	1008
BssMI	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
BssT1I	CCWWGG	1 cut(s)	1008
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	678, 1045
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	4 cut(s)	189, 732, 1065, 1072
BstDEI	CTNAG	4 cut(s)	183, 303, 719, 777
BstDSI	CCRYGG	1 cut(s)	1008
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	6 cut(s)	350, 625, 701, 840, 969, 1095
BstMBI	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 371, 670
BstNI	CCWGG	1 cut(s)	420
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	1115
BstSLI	GKGCMC	1 cut(s)	1040
BstV1I	GCAGC	5 cut(s)	37, 377, 421, 443, 1054
BstV2I	GAAGAC	1 cut(s)	983
BstX2I	RGATCY	1 cut(s)	966
BstYI	RGATCY	1 cut(s)	966
Bsu36I	CCTNAGG	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	1038, 1074
BtgI	CCRYGG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	548
BtsIMutI	CAGTG	4 cut(s)	239, 336, 691, 1041
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	4 cut(s)	189, 732, 1065, 1072
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	715, 1036, 1037
Csp6I	GTAC	2 cut(s)	822, 949
CspCI	CAANNNNNGTGG	4 cut(s)	147, 182, 541, 576
CviAII	CATG	6 cut(s)	143, 620, 647, 957, 1009, 1060
CviQI	GTAC	2 cut(s)	822, 949
DdeI	CTNAG	4 cut(s)	183, 303, 719, 777
DpnI	GATC	6 cut(s)	349, 624, 700, 839, 968, 1094
DpnII	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	2 cut(s)	268, 711
Eco130I	CCWWGG	1 cut(s)	1008
Eco24I	GRGCYC	3 cut(s)	270, 713, 1040
Eco47I	GGWCC	1 cut(s)	715
Eco53kI	GAGCTC	2 cut(s)	268, 711
Eco57I	CTGAAG	3 cut(s)	65, 263, 786
Eco81I	CCTNAGG	1 cut(s)	719
Eco91I	GGTNACC	1 cut(s)	92
EcoICRI	GAGCTC	2 cut(s)	268, 711
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoO65I	GGTNACC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	1008
EcoT38I	GRGCYC	3 cut(s)	270, 713, 1040
ErhI	CCWWGG	1 cut(s)	1008
FaeI	CATG	6 cut(s)	146, 623, 650, 960, 1012, 1063
FalI	AAGNNNNNCTT	2 cut(s)	718, 750
FatI	CATG	6 cut(s)	142, 619, 646, 956, 1008, 1059
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	3 cut(s)	622, 837, 1092
Fnu4HI	GCNGC	5 cut(s)	26, 366, 432, 435, 1068
FokI	GGATG	1 cut(s)	535
FriOI	GRGCYC	3 cut(s)	270, 713, 1040
Fsp4HI	GCNGC	5 cut(s)	26, 366, 432, 435, 1068
FspBI	CTAG	3 cut(s)	36, 276, 324
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	5 cut(s)	26, 366, 432, 435, 1068
HaeIII	GGCC	2 cut(s)	1038, 1074
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	6 cut(s)	146, 623, 650, 960, 1012, 1063
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	4 cut(s)	309, 321, 681, 853
HindII	GTYRAC	4 cut(s)	309, 321, 681, 853
HindIII	AAGCTT	2 cut(s)	106, 832
HinfI	GANTC	4 cut(s)	146, 925, 992, 1048
HphI	GGTGA	1 cut(s)	1024
Hpy166II	GTNNAC	4 cut(s)	309, 321, 681, 853
Hpy188I	TCNGA	4 cut(s)	598, 703, 842, 991
Hpy188III	TCNNGA	6 cut(s)	281, 539, 626, 647, 718, 872
Hpy8I	GTNNAC	4 cut(s)	309, 321, 681, 853
HpyAV	CCTTC	4 cut(s)	231, 515, 1012, 1066
HpyCH4III	ACNGT	2 cut(s)	678, 1045
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 371, 670
HpyF3I	CTNAG	4 cut(s)	183, 303, 719, 777
Hsp92II	CATG	6 cut(s)	146, 623, 650, 960, 1012, 1063
HspAI	GCGC	1 cut(s)	488
Ksp22I	TGATCA	3 cut(s)	622, 837, 1092
Kzo9I	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
LmnI	GCTCC	1 cut(s)	708
Lsp1109I	GCAGC	5 cut(s)	37, 377, 421, 443, 1054
LweI	GCATC	3 cut(s)	407, 563, 751
MaeI	CTAG	3 cut(s)	36, 276, 324
MaeIII	GTNAC	3 cut(s)	40, 92, 216
MalI	GATC	6 cut(s)	349, 624, 700, 839, 968, 1094
MboI	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
MboII	GAAGA	6 cut(s)	71, 256, 510, 805, 988, 1027
MflI	RGATCY	1 cut(s)	966
MhlI	GDGCHC	4 cut(s)	270, 691, 713, 1040
MlyI	GAGTC	1 cut(s)	1001
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	3 cut(s)	290, 783, 879
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	365, 371, 670
NcoI	CCATGG	1 cut(s)	1008
NdeII	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
NlaIII	CATG	6 cut(s)	146, 623, 650, 960, 1012, 1063
NlaIV	GGNNCC	4 cut(s)	417, 1038, 1039, 1109
NsbI	TGCGCA	1 cut(s)	489
PagI	TCATGA	1 cut(s)	646
PaqCI	CACCTGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	3 cut(s)	146, 925, 1048
PkrI	GCNGC	5 cut(s)	27, 367, 433, 436, 1069
PleI	GAGTC	1 cut(s)	1000
PpsI	GAGTC	1 cut(s)	1000
Psp124BI	GAGCTC	2 cut(s)	270, 713
Psp6I	CCWGG	1 cut(s)	418
PspEI	GGTNACC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	4 cut(s)	417, 1038, 1039, 1109
PspOMI	GGGCCC	1 cut(s)	1036
PspPI	GGNCC	3 cut(s)	715, 1036, 1037
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	966
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	823, 950
RsaNI	GTAC	2 cut(s)	822, 949
SacI	GAGCTC	2 cut(s)	270, 713
SaqAI	TTAA	3 cut(s)	290, 783, 879
SatI	GCNGC	5 cut(s)	26, 366, 432, 435, 1068
Sau3AI	GATC	6 cut(s)	347, 622, 698, 837, 966, 1092
Sau96I	GGNCC	3 cut(s)	715, 1036, 1037
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	4 cut(s)	270, 691, 713, 1040
SfaNI	GCATC	3 cut(s)	407, 563, 751
SfcI	CTRYAG	1 cut(s)	1115
SinI	GGWCC	1 cut(s)	715
SmlI	CTYRAG	4 cut(s)	281, 690, 872, 1102
SmoI	CTYRAG	4 cut(s)	281, 690, 872, 1102
SpeI	ACTAGT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	3 cut(s)	36, 276, 324
SstI	GAGCTC	2 cut(s)	270, 713
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	1008
TaaI	ACNGT	2 cut(s)	678, 1045
TaqI	TCGA	1 cut(s)	229
TaqII	GACCGA	1 cut(s)	703
TatI	WGTACW	1 cut(s)	948
TfiI	GAWTC	3 cut(s)	146, 925, 1048
Tru1I	TTAA	3 cut(s)	290, 783, 879
Tru9I	TTAA	3 cut(s)	290, 783, 879
TscAI	CASTG	4 cut(s)	246, 336, 691, 1048
TseI	GCWGC	5 cut(s)	25, 365, 431, 434, 1067
TspDTI	ATGAA	5 cut(s)	159, 401, 635, 801, 1048
TspRI	CASTG	4 cut(s)	246, 336, 691, 1048
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	1 cut(s)	867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	3 cut(s)	36, 276, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.