Rorug05G0069400

glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012860
Physical Location & Seq
Forward (+)
5930050 .. 5931088
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0069400.1

Sequence Viewer

Length: 648 bp
ATGGCCTCGCAGTTTCTATTGTTAGCATGCCTTGCTATAACAGCTTCCATTGCTTTGGCATCTGACCCAAGTTCTCTCCAGGATTTCTGTGTGGCTGATCTATCAACCTCAGTACCAGTGAATGGACATGTGTGCAAGGACCCCAAGCTAGTTGTCGCCGATGACTTCTTCTTCAGTGGACTTCACCTAGCAGGCAACACTTCAAACCCTGCCGGTTCACGTGTGACCCCTGCAAACGTAGCCCAGATTCCAGGACTTAATACTCTTGGTATCTCCCTTGTTCGTATCGACTATGCACCATGGGGCATCAATGCTCCACACACTCATCCTAGAGCCACTGAAGTCCTAACAGTCCTAGAAGGGAGCCTCCAAGTGGGTTTTGTCACCTCCAACCCCGAAAACAGACTTATCACAAAGGTGCTTCAGAAGGGCGATGTGTTTGTGTTCCCAGTAGGACTTGTGCATTTCCAGCACAATGTTGGAAATGTTAATGCGGTCGCCATTGCAGCTCTGAGCAGCCAAAATCCAGGTGCTATTACCATTGCCAATGCAGTGTTTGGATCAAAGCCTGCCATTTCTGCTGATGTTCTTGCAAAGGCATTCCAAGTCGACAAGGACACAATCTACGATTTCCAGTCCAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

215

Amino Acids

22.57

Weight (kDa)

6.01

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 61 - 207 8.9e-53 Cupin
Cupin_2 PF07883 96 - 168 5.7e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44680
fragaria_vesca FvH4_3g13300
malus_domestica MD05G1243000.v1.1 MD10G1225100.v1.1
prunus_persica Prupe.4G120400_v2.0.a1
pyrus_communis pycom05g21960 pycom10g18890
rosa_chinensis RchiOBHm_Chr5g0021771
rosa_laevigata RLG00000032626
rosa_multiflora Rmu_ssc0000233.1_g000002
rosa_roxburghii Rroxscaffold_1G00056940
rosa_rugosa Rorug05G0069300 Rorug05G0069400
rosa_samantha Rh5AG157900 Rh5BG157400 Rh5CG171600 Rh5DG157700
rosa_wichuraiana Rw5G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccI GTMKAC 1 cut(s) 609
AciI CCGC 1 cut(s) 494
AclWI GGATC 1 cut(s) 568
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 3 cut(s) 157, 360, 407
AcvI CACGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 122, 373
AflIII ACRYGT 2 cut(s) 127, 220
AgsI TTSAA 1 cut(s) 204
AjnI CCWGG 3 cut(s) 78, 250, 526
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 3 cut(s) 44, 148, 509
AluI AGCT 3 cut(s) 44, 148, 509
AlwI GGATC 1 cut(s) 568
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 506, 516
ApoI RAATTY 1 cut(s) 641
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 176, 376
AvaII GGWCC 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BbrPI CACGTG 1 cut(s) 221
BbvI GCAGC 2 cut(s) 518, 528
BciT130I CCWGG 3 cut(s) 80, 252, 528
BfaI CTAG 5 cut(s) 149, 188, 330, 356, 646
BisI GCNGC 2 cut(s) 507, 517
BlsI GCNGC 2 cut(s) 508, 518
Bme1390I CCNGG 3 cut(s) 80, 252, 528
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 365
BmrFI CCNGG 3 cut(s) 80, 252, 528
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 2 cut(s) 68, 315
BmuI ACTGGG 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 373
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 3 cut(s) 116, 449, 634
Bse3DI GCAATG 3 cut(s) 48, 501, 540
BseBI CCWGG 3 cut(s) 80, 252, 528
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 2 cut(s) 122, 373
BseMI GCAATG 3 cut(s) 48, 501, 540
BseMII CTCAG 2 cut(s) 123, 503
BseNI ACTGG 3 cut(s) 116, 449, 634
BseXI GCAGC 2 cut(s) 518, 528
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 122, 373
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 97, 560
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 122, 504
BspLI GGNNCC 2 cut(s) 141, 365
BspPI GGATC 1 cut(s) 568
BsrDI GCAATG 3 cut(s) 48, 501, 540
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 3 cut(s) 116, 449, 634
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 97, 560
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 3 cut(s) 80, 252, 528
Bst4CI ACNGT 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 28, 193, 570
BstDEI CTNAG 2 cut(s) 109, 512
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 100, 563
BstMBI GATC 2 cut(s) 97, 560
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 239, 469, 506, 578
BstNI CCWGG 3 cut(s) 80, 252, 528
BstNSI RCATGY 2 cut(s) 30, 131
BstSCI CCNGG 3 cut(s) 78, 250, 526
BstV1I GCAGC 2 cut(s) 518, 528
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 4 cut(s) 123, 181, 336, 558
Cac8I GCNNGC 3 cut(s) 28, 193, 570
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 113
CviAII CATG 3 cut(s) 27, 128, 300
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 109, 512
DpnI GATC 2 cut(s) 99, 562
DpnII GATC 2 cut(s) 97, 560
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 3 cut(s) 157, 360, 407
Eco72I CACGTG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 78, 250, 526
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 3 cut(s) 30, 131, 303
FaiI YATR 5 cut(s) 28, 38, 129, 294, 301
FatI CATG 3 cut(s) 26, 127, 299
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 507, 517
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 507, 517
FspBI CTAG 5 cut(s) 149, 188, 330, 356, 646
GluI GCNGC 2 cut(s) 507, 517
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 213
Hin1II CATG 3 cut(s) 30, 131, 303
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 176, 376
Hpy166II GTNNAC 3 cut(s) 179, 218, 610
Hpy188I TCNGA 3 cut(s) 64, 426, 513
Hpy8I GTNNAC 3 cut(s) 179, 218, 610
HpyAV CCTTC 2 cut(s) 353, 421
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 220, 237
HpyCH4V TGCA 7 cut(s) 135, 233, 296, 463, 506, 551, 593
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 239, 469, 506, 578
HpyF3I CTNAG 2 cut(s) 109, 512
HpySE526I ACGT 2 cut(s) 220, 237
Hsp92II CATG 3 cut(s) 30, 131, 303
Kzo9I GATC 2 cut(s) 97, 560
LmnI GCTCC 2 cut(s) 319, 363
Lsp1109I GCAGC 2 cut(s) 518, 528
LweI GCATC 2 cut(s) 68, 315
MaeI CTAG 5 cut(s) 149, 188, 330, 356, 646
MaeII ACGT 2 cut(s) 220, 237
MaeIII GTNAC 2 cut(s) 223, 382
MalI GATC 2 cut(s) 99, 562
MboI GATC 2 cut(s) 97, 560
MboII GAAGA 2 cut(s) 160, 163
MluCI AATT 1 cut(s) 641
MmeI TCCRAC 2 cut(s) 414, 460
MnlI CCTC 4 cut(s) 16, 118, 377, 397
MseI TTAA 2 cut(s) 258, 489
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 3 cut(s) 80, 252, 528
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 3 cut(s) 80, 252, 528
MwoI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 239, 469, 506, 578
NcoI CCATGG 1 cut(s) 299
NdeII GATC 2 cut(s) 97, 560
NlaIII CATG 3 cut(s) 30, 131, 303
NlaIV GGNNCC 2 cut(s) 141, 365
NmuCI GTSAC 2 cut(s) 223, 382
NspI RCATGY 2 cut(s) 30, 131
OliI CACNNNNGTG 1 cut(s) 416
PaeI GCATGC 1 cut(s) 30
PciI ACATGT 1 cut(s) 127
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 122
PfoI TCCNGGA 2 cut(s) 78, 250
PkrI GCNGC 2 cut(s) 508, 518
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 139
PscI ACATGT 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 3 cut(s) 78, 250, 526
PspCI CACGTG 1 cut(s) 221
PspGI CCWGG 3 cut(s) 78, 250, 526
PspN4I GGNNCC 2 cut(s) 141, 365
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 2 cut(s) 258, 489
SatI GCNGC 2 cut(s) 507, 517
Sau3AI GATC 2 cut(s) 97, 560
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 80, 252, 528
SfaNI GCATC 2 cut(s) 68, 315
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 416
SphI GCATGC 1 cut(s) 30
Sse9I AATT 1 cut(s) 641
SsiI CCGC 1 cut(s) 494
SspMI CTAG 5 cut(s) 149, 188, 330, 356, 646
StyD4I CCNGG 3 cut(s) 78, 250, 526
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 223, 240
TaqI TCGA 2 cut(s) 288, 609
TasI AATT 1 cut(s) 641
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 258, 489
Tru9I TTAA 2 cut(s) 258, 489
TscAI CASTG 4 cut(s) 123, 181, 343, 558
TseFI GTSAC 2 cut(s) 223, 382
TseI GCWGC 2 cut(s) 506, 516
Tsp45I GTSAC 2 cut(s) 223, 382
TspRI CASTG 4 cut(s) 123, 181, 343, 558
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 641
XceI RCATGY 2 cut(s) 30, 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 5 cut(s) 149, 188, 330, 356, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.