Rh5DG157700

glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012860
Physical Location & Seq
Forward (+)
16060737 .. 16063418
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG157700.1

Sequence Viewer

Length: 933 bp
ATGTGTTCCTCTAAACCAAAATTGCAGCAAAATCCTAGTGTTACTCTAACAACACCTAAAACCAATCGCCGTTTGGTTCTTCAGCCAACTGGTAACCAATTTCCAAGCTTGGAACAAAAGAAGTTTCTCAAAAAGACCTCCCATGAATCCCTTATTCCACCTCCTTTGCTATCACAGAAAACTAAGCCCGCAATTTCTCCTCCCATCTCTCCCAAGTTACCTTCGCCTCGACCACCAGCACTGAAGAGAGGAAAAGACCATAATGAGCTCAATTCTAGTCTTGAGAAGTTAATTCTCACACCTAAGTCAACAACCAAGTTGACTAGTTCAGTGAAAAAGTCAAAGAGATCAAGTGTTGCAGGTGCAGCTTCTGCTGAAAATGTAATGAAAAATATAGCATCTTTGATAGTAGAGGCACCTGGAAGCATAGCAGCTGCAAGGAGAGAGCAAGTTGCAACAATGCAAGAACAACGAAAGTTGAGAATTGCGCATTATGGAAGAACAAAGTCTGCAAAGTTTGAAGGGAAAGTAGTGCCTCTTGATACCTCATCCACCAATGTTGAACAAAGGAGATGCAGTTTTATCACACCAAGTTCAGACCCTCTGTATGTTGCTTACCATGATCAAGAATGGGGAGTTCCTGTTCATGATGACAATTTGTTGCTTGAATTGCTACTGTTGACCAGTGCTCAAGTAGGATCAGATTGGAGCTCGGTCCTGAGGAAAAGGCAGGCTTTGAGGGAGGCATTTTCAGGTTTTGAAGCAGAAATTGTGGCTAAGTTTAATGAAAAGAAGATAACTTCAGTAAGTGCTGATACTGGTACTGATATAAGCTTGATCAGAGGAGTTGTTGACAATGCTAAAAGAATTCTTGAGGTACTACTACAAGATAAAACTGACCTTATATATTTGACAGATTTTACAATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

310

Amino Acids

34.19

Weight (kDa)

9.82

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 199 - 296 9e-28 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44680
fragaria_vesca FvH4_3g13300
malus_domestica MD05G1243000.v1.1 MD10G1225100.v1.1
prunus_persica Prupe.4G120400_v2.0.a1
pyrus_communis pycom05g21960 pycom10g18890
rosa_chinensis RchiOBHm_Chr5g0021771
rosa_laevigata RLG00000032626
rosa_multiflora Rmu_ssc0000233.1_g000002
rosa_roxburghii Rroxscaffold_1G00056940
rosa_rugosa Rorug05G0069300 Rorug05G0069400
rosa_samantha Rh5AG157900 Rh5BG157400 Rh5CG171600 Rh5DG157700
rosa_wichuraiana Rw5G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc16I TGCGCA 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 415
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 706
AcsI RAATTY 1 cut(s) 867
AcuI CTGAAG 3 cut(s) 65, 263, 786
AfaI GTAC 2 cut(s) 823, 879
AgsI TTSAA 4 cut(s) 521, 563, 668, 761
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 418
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 6 cut(s) 108, 268, 368, 434, 711, 834
AluI AGCT 6 cut(s) 108, 268, 368, 434, 711, 834
Alw21I GWGCWC 3 cut(s) 270, 691, 713
AlwI GGATC 1 cut(s) 706
AlwNI CAGNNNCTG 1 cut(s) 371
ApeKI GCWGC 4 cut(s) 25, 365, 431, 434
ApoI RAATTY 1 cut(s) 867
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 715
AvaII GGWCC 1 cut(s) 715
AxyI CCTNAGG 1 cut(s) 719
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 270, 713
Bbv12I GWGCWC 3 cut(s) 270, 691, 713
BbvI GCAGC 4 cut(s) 37, 377, 421, 443
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 2 cut(s) 622, 837
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 3 cut(s) 36, 276, 324
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 4 cut(s) 26, 366, 432, 435
BlsI GCNGC 4 cut(s) 27, 367, 433, 436
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 407, 563
BpuEI CTTGAG 3 cut(s) 302, 675, 893
BsaXI ACNNNNNCTCC 4 cut(s) 562, 592, 627, 657
Bse1I ACTGG 3 cut(s) 94, 684, 823
Bse21I CCTNAGG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 3 cut(s) 94, 684, 823
BseRI GAGGAG 2 cut(s) 189, 858
BseXI GCAGC 4 cut(s) 37, 377, 421, 443
BsgI GTGCAG 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 415
BsiHKAI GWGCWC 3 cut(s) 270, 691, 713
Bsp1286I GDGCHC 3 cut(s) 270, 691, 713
Bsp143I GATC 4 cut(s) 347, 622, 698, 837
BspACI CCGC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 711
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 706
BspT107I GGYRCC 1 cut(s) 415
BsrI ACTGG 3 cut(s) 94, 684, 823
BssMI GATC 4 cut(s) 347, 622, 698, 837
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 189, 732
BstDEI CTNAG 4 cut(s) 183, 303, 719, 777
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 350, 625, 701, 840
BstMBI GATC 4 cut(s) 347, 622, 698, 837
BstMWI GCNNNNNNNGC 3 cut(s) 365, 371, 670
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 418
BstV1I GCAGC 4 cut(s) 37, 377, 421, 443
Bsu36I CCTNAGG 1 cut(s) 719
BtsCI GGATG 1 cut(s) 548
BtsIMutI CAGTG 3 cut(s) 239, 336, 691
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 189, 732
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 822, 878
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 541, 576
CviAII CATG 3 cut(s) 143, 620, 647
CviQI GTAC 2 cut(s) 822, 878
DdeI CTNAG 4 cut(s) 183, 303, 719, 777
DpnI GATC 4 cut(s) 349, 624, 700, 839
DpnII GATC 4 cut(s) 347, 622, 698, 837
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 2 cut(s) 268, 711
Eco24I GRGCYC 2 cut(s) 270, 713
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 2 cut(s) 268, 711
Eco57I CTGAAG 3 cut(s) 65, 263, 786
Eco81I CCTNAGG 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 268, 711
EcoO65I GGTNACC 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 270, 713
FaeI CATG 3 cut(s) 146, 623, 650
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FatI CATG 3 cut(s) 142, 619, 646
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 2 cut(s) 622, 837
Fnu4HI GCNGC 4 cut(s) 26, 366, 432, 435
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 2 cut(s) 270, 713
Fsp4HI GCNGC 4 cut(s) 26, 366, 432, 435
FspBI CTAG 3 cut(s) 36, 276, 324
FspI TGCGCA 1 cut(s) 489
GlaI GCGC 1 cut(s) 489
GluI GCNGC 4 cut(s) 26, 366, 432, 435
HhaI GCGC 1 cut(s) 490
Hin1II CATG 3 cut(s) 146, 623, 650
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 4 cut(s) 309, 321, 681, 853
HindII GTYRAC 4 cut(s) 309, 321, 681, 853
HindIII AAGCTT 2 cut(s) 106, 832
HinfI GANTC 1 cut(s) 146
Hpy166II GTNNAC 4 cut(s) 309, 321, 681, 853
Hpy188I TCNGA 3 cut(s) 598, 703, 842
Hpy188III TCNNGA 6 cut(s) 281, 539, 626, 647, 718, 872
Hpy8I GTNNAC 4 cut(s) 309, 321, 681, 853
HpyAV CCTTC 2 cut(s) 231, 515
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4V TGCA 8 cut(s) 25, 359, 365, 437, 455, 463, 512, 576
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 371, 670
HpyF3I CTNAG 4 cut(s) 183, 303, 719, 777
Hsp92II CATG 3 cut(s) 146, 623, 650
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 2 cut(s) 622, 837
Kzo9I GATC 4 cut(s) 347, 622, 698, 837
LmnI GCTCC 1 cut(s) 708
Lsp1109I GCAGC 4 cut(s) 37, 377, 421, 443
LweI GCATC 2 cut(s) 407, 563
MaeI CTAG 3 cut(s) 36, 276, 324
MaeIII GTNAC 3 cut(s) 40, 92, 216
MalI GATC 4 cut(s) 349, 624, 700, 839
MboI GATC 4 cut(s) 347, 622, 698, 837
MboII GAAGA 4 cut(s) 71, 256, 510, 805
MhlI GDGCHC 3 cut(s) 270, 691, 713
MseI TTAA 2 cut(s) 290, 783
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 365, 371, 670
NdeII GATC 4 cut(s) 347, 622, 698, 837
NlaIII CATG 3 cut(s) 146, 623, 650
NlaIV GGNNCC 1 cut(s) 417
NsbI TGCGCA 1 cut(s) 489
PagI TCATGA 1 cut(s) 646
PaqCI CACCTGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 4 cut(s) 27, 367, 433, 436
Psp124BI GAGCTC 2 cut(s) 270, 713
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 823, 879
RsaNI GTAC 2 cut(s) 822, 878
SacI GAGCTC 2 cut(s) 270, 713
SaqAI TTAA 2 cut(s) 290, 783
SatI GCNGC 4 cut(s) 26, 366, 432, 435
Sau3AI GATC 4 cut(s) 347, 622, 698, 837
Sau96I GGNCC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 3 cut(s) 270, 691, 713
SfaNI GCATC 2 cut(s) 407, 563
SinI GGWCC 1 cut(s) 715
SmlI CTYRAG 3 cut(s) 281, 690, 872
SmoI CTYRAG 3 cut(s) 281, 690, 872
SpeI ACTAGT 1 cut(s) 323
SsiI CCGC 1 cut(s) 189
SspMI CTAG 3 cut(s) 36, 276, 324
SstI GAGCTC 2 cut(s) 270, 713
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 678
TaqI TCGA 1 cut(s) 229
TaqII GACCGA 1 cut(s) 703
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 290, 783
Tru9I TTAA 2 cut(s) 290, 783
TscAI CASTG 3 cut(s) 246, 336, 691
TseI GCWGC 4 cut(s) 25, 365, 431, 434
TspDTI ATGAA 4 cut(s) 159, 401, 635, 801
TspRI CASTG 3 cut(s) 246, 336, 691
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 3 cut(s) 36, 276, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.