Rorug05G0069300

glycosylase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
5926176 .. 5927448
1273 bp
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UTR
Exon/CDS
Intron
Rorug05G0069300.1

Sequence Viewer

Length: 480 bp
ATGACTTTTTTCCTGTTTTTCAGAGAGGTTATTCCACAAGCAATATGCACTAGATATGGACTTGTTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGTTCTAAGAGGAACAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAACAATTATAATGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATACACTTAATCAGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGATACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGGTTCTTGCCTCTGTTTTCTATTCTGCTTCGTCATTTTTTATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

18.14

Weight (kDa)

5.45

Isoelectric Point (pI)

19.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 366
AgsI TTSAA 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AloI GAACNNNNNNTCC 2 cut(s) 418, 450
AluBI AGCT 3 cut(s) 194, 282, 305
AluI AGCT 3 cut(s) 194, 282, 305
AlwI GGATC 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 285
AvaII GGWCC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 292, 314
BccI CCATC 1 cut(s) 208
BciVI GTATCC 1 cut(s) 90
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 306
BfuI GTATCC 1 cut(s) 90
BglII AGATCT 1 cut(s) 295
BisI GCNGC 2 cut(s) 303, 306
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 2 cut(s) 304, 307
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 73, 318
Bpu1102I GCTNAGC 1 cut(s) 195
BseGI GGATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 292, 314
Bsp143I GATC 3 cut(s) 271, 295, 342
Bsp1720I GCTNAGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 73, 318
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 1 cut(s) 350
BssMI GATC 3 cut(s) 271, 295, 342
Bst6I CTCTTC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 159, 195
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 3 cut(s) 274, 298, 345
BstMBI GATC 3 cut(s) 271, 295, 342
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 292, 314
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 285
CviAII CATG 4 cut(s) 118, 229, 245, 404
CviJI RGCY 4 cut(s) 194, 199, 282, 305
CviKI_1 RGCY 4 cut(s) 194, 199, 282, 305
DdeI CTNAG 2 cut(s) 159, 195
DpnI GATC 3 cut(s) 273, 297, 344
DpnII GATC 3 cut(s) 271, 295, 342
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 366
FaeI CATG 4 cut(s) 121, 232, 248, 407
FatI CATG 4 cut(s) 117, 228, 244, 403
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 1 cut(s) 439
Fsp4HI GCNGC 2 cut(s) 303, 306
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 303, 306
Hin1II CATG 4 cut(s) 121, 232, 248, 407
HinfI GANTC 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 3 cut(s) 23, 276, 339
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 411
HpyAV CCTTC 1 cut(s) 416
HpyCH4V TGCA 8 cut(s) 48, 121, 223, 248, 262, 302, 308, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 159, 195
Hsp92II CATG 4 cut(s) 121, 232, 248, 407
Kzo9I GATC 3 cut(s) 271, 295, 342
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 2 cut(s) 26, 268
Lsp1109I GCAGC 2 cut(s) 292, 314
MaeI CTAG 1 cut(s) 51
MalI GATC 3 cut(s) 273, 297, 344
MboI GATC 3 cut(s) 271, 295, 342
MboII GAAGA 2 cut(s) 233, 401
MflI RGATCY 1 cut(s) 295
MluCI AATT 5 cut(s) 132, 252, 263, 346, 366
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 6 cut(s) 19, 156, 249, 298, 333, 452
MseI TTAA 2 cut(s) 180, 333
MspA1I CMGCKG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 3 cut(s) 271, 295, 342
NlaIII CATG 4 cut(s) 121, 232, 248, 407
NlaIV GGNNCC 2 cut(s) 73, 318
NspI RCATGY 1 cut(s) 121
PaeI GCATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 304, 307
PsiI TTATAA 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 73, 318
PspPI GGNCC 1 cut(s) 285
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 305
SaqAI TTAA 2 cut(s) 180, 333
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 3 cut(s) 271, 295, 342
Sau96I GGNCC 1 cut(s) 285
SetI ASST 5 cut(s) 30, 196, 284, 290, 307
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 285
SphI GCATGC 1 cut(s) 121
Sse9I AATT 5 cut(s) 132, 252, 263, 346, 366
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 51
TasI AATT 5 cut(s) 132, 252, 263, 346, 366
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 180, 333
Tru9I TTAA 2 cut(s) 180, 333
TseI GCWGC 2 cut(s) 302, 305
TspDTI ATGAA 2 cut(s) 217, 233
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 1 cut(s) 366
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.