Rmu_ssc0000233.1_g000002

glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000233.1
OG0012860
Physical Location & Seq
Reverse (-)
3804 .. 5345
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1119 bp
atgtgttcctctaaaccaaaattgcagcaaaatcctagtgttactctaacaacacctaaaaccaatcgccgtttggttcttcagccgactggtaaccaatttccaagcttggaacaaaagaagtttctcaaaaagacctcccatgaatcccttattccacctcctttgctatcacagaaaactaagcccgcaatttctcctcccatctctcccaagttaccttcgcctcgaccaccagcactgaagagaggaaaagaccataatgagctcaattctagtcttgagaagttaattctcacacctaagtcaacaaccaagttgactagttcagtgaaaaagtcaaagagatcaagtgttgcaggtgcagcttctgctgaaaatgtaatgaaaaatatagcatctttgatagtagaggcacctggaagcatagcagctgcaaggagagagcaagttgcaacaatgcaagaacaacgaaagttgagaattgcgcattatggaagaacaaagtctgcaaagtttgaagggaaagtagtgcctcttgatacctcatccaccaatgttgaacaaaggagatgcagttttatcacaccaagttcagaccctctgtatgttgcttaccatgatcaagaatggggagttcctgttcatgatgacaatttgttgcttgaattgctactgttgaccagtgctcaagtaggatcagattggagctcggtcctgaggaaaaggcaggctttgagggaggcattttcaggttttgatgcagaaattgtggctaagtttaatgaaaagaagataacttcagtaagtgctgatactggtactgatataagcttgatcagaggagttgttgacaatgctaaaagaattcttgagattaaaagggaaactgggtcatttgacaactacttgtggggatttgtgaatcacaagccaatttccacccagtacaagtcatgccacaagatccctgtgaagacctccaaatcagagtccataagcaaagccatggtgaagaagggtttcaggtttgtgggccccactgtgattcactccttcatgcaagctgctggcctcactaatgaccacttgatcacttgctcaaggcaccaactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

372

Amino Acids

41.11

Weight (kDa)

10.01

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 199 - 370 7.4e-64 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44680
fragaria_vesca FvH4_3g13300
malus_domestica MD05G1243000.v1.1 MD10G1225100.v1.1
prunus_persica Prupe.4G120400_v2.0.a1
pyrus_communis pycom05g21960 pycom10g18890
rosa_chinensis RchiOBHm_Chr5g0021771
rosa_laevigata RLG00000032626
rosa_multiflora Rmu_ssc0000233.1_g000002
rosa_roxburghii Rroxscaffold_1G00056940
rosa_rugosa Rorug05G0069300 Rorug05G0069400
rosa_samantha Rh5AG157900 Rh5BG157400 Rh5CG171600 Rh5DG157700
rosa_wichuraiana Rw5G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc16I TGCGCA 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 415, 1107
AciI CCGC 1 cut(s) 189
AclWI GGATC 2 cut(s) 706, 961
AcsI RAATTY 1 cut(s) 867
AcuI CTGAAG 3 cut(s) 65, 263, 786
AfaI GTAC 2 cut(s) 823, 950
AgsI TTSAA 3 cut(s) 521, 563, 668
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 418
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 7 cut(s) 108, 268, 368, 434, 711, 834, 1067
AluI AGCT 7 cut(s) 108, 268, 368, 434, 711, 834, 1067
Alw21I GWGCWC 3 cut(s) 270, 691, 713
AlwI GGATC 2 cut(s) 706, 961
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 2 cut(s) 1036, 1072
ApaI GGGCCC 1 cut(s) 1040
ApeKI GCWGC 5 cut(s) 25, 365, 431, 434, 1067
ApoI RAATTY 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 1022
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 715, 1036, 1037
AsuHPI GGTGA 1 cut(s) 1024
AvaII GGWCC 1 cut(s) 715
AxyI CCTNAGG 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 1040
BanI GGYRCC 2 cut(s) 415, 1107
BanII GRGCYC 3 cut(s) 270, 713, 1040
BbsI GAAGAC 1 cut(s) 983
Bbv12I GWGCWC 3 cut(s) 270, 691, 713
BbvI GCAGC 5 cut(s) 37, 377, 421, 443, 1054
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 3 cut(s) 622, 837, 1092
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 3 cut(s) 36, 276, 324
BfmI CTRYAG 1 cut(s) 1115
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 5 cut(s) 26, 366, 432, 435, 1068
BlsI GCNGC 5 cut(s) 27, 367, 433, 436, 1069
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 3 cut(s) 715, 1036, 1037
BmiI GGNNCC 4 cut(s) 417, 1038, 1039, 1109
BmrFI CCNGG 1 cut(s) 420
BmrI ACTGGG 2 cut(s) 900, 940
BmsI GCATC 3 cut(s) 407, 563, 751
BmuI ACTGGG 2 cut(s) 900, 940
BpiI GAAGAC 1 cut(s) 983
BpuEI CTTGAG 4 cut(s) 302, 675, 893, 1087
BsaJI CCNNGG 1 cut(s) 1008
BsaXI ACNNNNNCTCC 4 cut(s) 562, 592, 627, 657
Bse1I ACTGG 5 cut(s) 94, 684, 823, 895, 946
Bse21I CCTNAGG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 1008
BseGI GGATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 5 cut(s) 94, 684, 823, 895, 946
BseRI GAGGAG 2 cut(s) 189, 858
BseSI GKGCMC 1 cut(s) 1040
BseXI GCAGC 5 cut(s) 37, 377, 421, 443, 1054
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 2 cut(s) 1038, 1074
BshNI GGYRCC 2 cut(s) 415, 1107
BsiHKAI GWGCWC 3 cut(s) 270, 691, 713
BsnI GGCC 2 cut(s) 1038, 1074
Bsp120I GGGCCC 1 cut(s) 1036
Bsp1286I GDGCHC 4 cut(s) 270, 691, 713, 1040
Bsp143I GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
Bsp19I CCATGG 1 cut(s) 1008
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 1038, 1074
BspCNI CTCAG 1 cut(s) 711
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 4 cut(s) 417, 1038, 1039, 1109
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 2 cut(s) 706, 961
BspT107I GGYRCC 2 cut(s) 415, 1107
BsrI ACTGG 5 cut(s) 94, 684, 823, 895, 946
BssECI CCNNGG 1 cut(s) 1008
BssMI GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
BssT1I CCWWGG 1 cut(s) 1008
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 678, 1045
Bst6I CTCTTC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 4 cut(s) 189, 732, 1065, 1072
BstDEI CTNAG 4 cut(s) 183, 303, 719, 777
BstDSI CCRYGG 1 cut(s) 1008
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 6 cut(s) 350, 625, 701, 840, 969, 1095
BstMBI GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
BstMWI GCNNNNNNNGC 3 cut(s) 365, 371, 670
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 1115
BstSLI GKGCMC 1 cut(s) 1040
BstV1I GCAGC 5 cut(s) 37, 377, 421, 443, 1054
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 1 cut(s) 966
BstYI RGATCY 1 cut(s) 966
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 2 cut(s) 1038, 1074
BtgI CCRYGG 1 cut(s) 1008
BtsCI GGATG 1 cut(s) 548
BtsIMutI CAGTG 4 cut(s) 239, 336, 691, 1041
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 4 cut(s) 189, 732, 1065, 1072
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 3 cut(s) 715, 1036, 1037
Csp6I GTAC 2 cut(s) 822, 949
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 541, 576
CviAII CATG 6 cut(s) 143, 620, 647, 957, 1009, 1060
CviQI GTAC 2 cut(s) 822, 949
DdeI CTNAG 4 cut(s) 183, 303, 719, 777
DpnI GATC 6 cut(s) 349, 624, 700, 839, 968, 1094
DpnII GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 2 cut(s) 268, 711
Eco130I CCWWGG 1 cut(s) 1008
Eco24I GRGCYC 3 cut(s) 270, 713, 1040
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 2 cut(s) 268, 711
Eco57I CTGAAG 3 cut(s) 65, 263, 786
Eco81I CCTNAGG 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 268, 711
EcoO109I RGGNCCY 1 cut(s) 1037
EcoO65I GGTNACC 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 1008
EcoT38I GRGCYC 3 cut(s) 270, 713, 1040
ErhI CCWWGG 1 cut(s) 1008
FaeI CATG 6 cut(s) 146, 623, 650, 960, 1012, 1063
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FatI CATG 6 cut(s) 142, 619, 646, 956, 1008, 1059
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 3 cut(s) 622, 837, 1092
Fnu4HI GCNGC 5 cut(s) 26, 366, 432, 435, 1068
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 3 cut(s) 270, 713, 1040
Fsp4HI GCNGC 5 cut(s) 26, 366, 432, 435, 1068
FspBI CTAG 3 cut(s) 36, 276, 324
FspI TGCGCA 1 cut(s) 489
GlaI GCGC 1 cut(s) 489
GluI GCNGC 5 cut(s) 26, 366, 432, 435, 1068
HaeIII GGCC 2 cut(s) 1038, 1074
HhaI GCGC 1 cut(s) 490
Hin1II CATG 6 cut(s) 146, 623, 650, 960, 1012, 1063
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 4 cut(s) 309, 321, 681, 853
HindII GTYRAC 4 cut(s) 309, 321, 681, 853
HindIII AAGCTT 2 cut(s) 106, 832
HinfI GANTC 4 cut(s) 146, 925, 992, 1048
HphI GGTGA 1 cut(s) 1024
Hpy166II GTNNAC 4 cut(s) 309, 321, 681, 853
Hpy188I TCNGA 4 cut(s) 598, 703, 842, 991
Hpy188III TCNNGA 6 cut(s) 281, 539, 626, 647, 718, 872
Hpy8I GTNNAC 4 cut(s) 309, 321, 681, 853
HpyAV CCTTC 4 cut(s) 231, 515, 1012, 1066
HpyCH4III ACNGT 2 cut(s) 678, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 371, 670
HpyF3I CTNAG 4 cut(s) 183, 303, 719, 777
Hsp92II CATG 6 cut(s) 146, 623, 650, 960, 1012, 1063
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 3 cut(s) 622, 837, 1092
Kzo9I GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
LmnI GCTCC 1 cut(s) 708
Lsp1109I GCAGC 5 cut(s) 37, 377, 421, 443, 1054
LweI GCATC 3 cut(s) 407, 563, 751
MaeI CTAG 3 cut(s) 36, 276, 324
MaeIII GTNAC 3 cut(s) 40, 92, 216
MalI GATC 6 cut(s) 349, 624, 700, 839, 968, 1094
MboI GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
MboII GAAGA 6 cut(s) 71, 256, 510, 805, 988, 1027
MflI RGATCY 1 cut(s) 966
MhlI GDGCHC 4 cut(s) 270, 691, 713, 1040
MlyI GAGTC 1 cut(s) 1001
MroXI GAANNNNTTC 1 cut(s) 1022
MseI TTAA 3 cut(s) 290, 783, 879
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 365, 371, 670
NcoI CCATGG 1 cut(s) 1008
NdeII GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
NlaIII CATG 6 cut(s) 146, 623, 650, 960, 1012, 1063
NlaIV GGNNCC 4 cut(s) 417, 1038, 1039, 1109
NsbI TGCGCA 1 cut(s) 489
PagI TCATGA 1 cut(s) 646
PaqCI CACCTGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 1022
PfeI GAWTC 3 cut(s) 146, 925, 1048
PkrI GCNGC 5 cut(s) 27, 367, 433, 436, 1069
PleI GAGTC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 1000
Psp124BI GAGCTC 2 cut(s) 270, 713
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 417, 1038, 1039, 1109
PspOMI GGGCCC 1 cut(s) 1036
PspPI GGNCC 3 cut(s) 715, 1036, 1037
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 966
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 823, 950
RsaNI GTAC 2 cut(s) 822, 949
SacI GAGCTC 2 cut(s) 270, 713
SaqAI TTAA 3 cut(s) 290, 783, 879
SatI GCNGC 5 cut(s) 26, 366, 432, 435, 1068
Sau3AI GATC 6 cut(s) 347, 622, 698, 837, 966, 1092
Sau96I GGNCC 3 cut(s) 715, 1036, 1037
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 4 cut(s) 270, 691, 713, 1040
SfaNI GCATC 3 cut(s) 407, 563, 751
SfcI CTRYAG 1 cut(s) 1115
SinI GGWCC 1 cut(s) 715
SmlI CTYRAG 4 cut(s) 281, 690, 872, 1102
SmoI CTYRAG 4 cut(s) 281, 690, 872, 1102
SpeI ACTAGT 1 cut(s) 323
SsiI CCGC 1 cut(s) 189
SspMI CTAG 3 cut(s) 36, 276, 324
SstI GAGCTC 2 cut(s) 270, 713
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 2 cut(s) 678, 1045
TaqI TCGA 1 cut(s) 229
TaqII GACCGA 1 cut(s) 703
TatI WGTACW 1 cut(s) 948
TfiI GAWTC 3 cut(s) 146, 925, 1048
Tru1I TTAA 3 cut(s) 290, 783, 879
Tru9I TTAA 3 cut(s) 290, 783, 879
TscAI CASTG 4 cut(s) 246, 336, 691, 1048
TseI GCWGC 5 cut(s) 25, 365, 431, 434, 1067
TspDTI ATGAA 5 cut(s) 159, 401, 635, 801, 1048
TspRI CASTG 4 cut(s) 246, 336, 691, 1048
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 1022
XspI CTAG 3 cut(s) 36, 276, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.