Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000280.1

Orthogroup ID

OG0008546

Physical Location & Seq

Genomic Coordinates Reverse (-)

20710 .. 21882

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgcctgagagggactcggccgcgtttaatgcgttgattgatggatatgtcaagttgggggaaatgggctcggctcgaagtttgtttgatgagatgagggataggaatgtggtgacttggactagtatgatttatggttactgccatcgaggtgatgtagaggccgctaaatcactctttgattctatgcccaagaagaatcttatttcttggaatgtgatgattggtggttgttgccaaaacaaacgtccccatgaagccgtgagattgtttcatgaaatgcagtcaactacatcgcttgaaccagatgctgtaacggttgtgagcattcttccggctatagctgatttgggtgctttggatttagggcattgggttcacgagtttgtaaagaggaagaagcttgataggctaaccaatatatgcactgcgcttgtggatatgtatgcaaaatgtggtgaaataaaagaggccaaaagactctttgatgagatgcctgaaaaagaaacggcttcttggaatgctttgataaatgggtttgcagtcaatggctatggaaaggaggcactagatgtatttttagagatgcaaagagaaaagtttaagcctaacaatataacctttgtcagtgttctgtccgcttgtaaccattgtggtctggtagaggaagggaaattttggtttaggaaaatggaaaactttgggctcattccacagattgagcattatggttgtatggtagatcttttaggaagggcagggtgcttggaggaagctgagaagctgatcaagagcatgccttacgatgttaatgggataattttgagttcctttctttttgcatgtgggtattgtgaggacgttacgaaagccaacaaaactttagagcaggctgtcaaactggagccatggaattatggaaattatgtaatcttgagaaatttgtatgcgagaaacagaaggtggagtgatgcagataatattaagagttcaatgcggaagaatcaagcagataaagaggttggttgtagtgttatagaggttgatggtagaatcaagcagtttgtggctggggacaggatgcacacatcttcggaagctatacatttgactttgctacagagttggaagcacatgatgggacaagtcccatgttctatagctaaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

390

Amino Acids

44.11

Weight (kDa)

6.57

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 37	3.7e-07	PPR repeat family
PPR	PF01535	8 - 37	1.7e-07	PPR repeat
PPR_2	PF13041	35 - 68	4.2e-09	PPR repeat family
PPR_1	PF12854	36 - 63	1.2e-07	PPR repeat
PPR	PF01535	38 - 67	7.5e-09	PPR repeat
PPR_2	PF13041	67 - 111	3.3e-10	PPR repeat family
PPR_1	PF12854	67 - 95	3.3e-06	PPR repeat
PPR	PF01535	69 - 96	1e-08	PPR repeat
PPR_2	PF13041	170 - 215	2.6e-11	PPR repeat family
PPR	PF01535	172 - 200	9.1e-08	PPR repeat
E_motif	PF20431	287 - 347	3.3e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880
fragaria_vesca	FvH4_7g09950
malus_domestica	MD07G1104700.v1.1 MD07G1105400.v1.1
prunus_persica	Prupe.2G128300_v2.0.a1
pyrus_communis	pycom07g08960
rosa_chinensis	RchiOBHm_Chr1g0347511 RchiOBHm_Chr1g0347541
rosa_laevigata	RLG00000028745
rosa_multiflora	Rmu_ssc0000280.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307740
rosa_rugosa	Rorug01G0187500
rosa_samantha	Rh1AG204700 Rh1BG170500 Rh1CG189800 Rh1DG200800
rosa_wichuraiana	Rw0G013630 Rw1G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	4 cut(s)	21, 165, 639, 997
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	674, 940
AgsI	TTSAA	2 cut(s)	302, 993
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	6 cut(s)	344, 403, 776, 784, 1100, 1163
AluI	AGCT	6 cut(s)	344, 403, 776, 784, 1100, 1163
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	18, 162, 471
ApoI	RAATTY	2 cut(s)	674, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspLEI	GCGC	1 cut(s)	433
AsuHPI	GGTGA	3 cut(s)	124, 164, 470
BanII	GRGCYC	2 cut(s)	71, 708
BauI	CACGAG	1 cut(s)	380
BccI	CCATC	4 cut(s)	35, 153, 1040, 1132
BceAI	ACGGC	2 cut(s)	245, 525
BclI	TGATCA	1 cut(s)	786
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	123, 569
BfmI	CTRYAG	3 cut(s)	339, 1118, 1158
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	2 cut(s)	21, 165
BlsI	GCNGC	2 cut(s)	22, 166
BmiI	GGNNCC	1 cut(s)	906
BmsI	GCATC	5 cut(s)	298, 483, 576, 961, 1071
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	1164
BpuEI	CTTGAG	1 cut(s)	955
BsaJI	CCNNGG	1 cut(s)	908
Bse1I	ACTGG	1 cut(s)	906
BseDI	CCNNGG	1 cut(s)	908
BseGI	GGATG	1 cut(s)	1086
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	906
BseX3I	CGGCCG	1 cut(s)	18
BseYI	CCCAGC	1 cut(s)	1070
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	20, 164, 473
BsiEI	CGRYCG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	5 cut(s)	26, 234, 1088, 1133, 1155
BsmFI	GGGAC	5 cut(s)	26, 234, 1088, 1133, 1155
BsmI	GAATGC	2 cut(s)	327, 526
BsnI	GGCC	3 cut(s)	20, 164, 473
Bsp1286I	GDGCHC	2 cut(s)	71, 708
Bsp143I	GATC	2 cut(s)	742, 786
Bsp19I	CCATGG	1 cut(s)	908
BspACI	CCGC	4 cut(s)	21, 165, 639, 997
BspANI	GGCC	3 cut(s)	20, 164, 473
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	906
BsrI	ACTGG	1 cut(s)	906
BssECI	CCNNGG	1 cut(s)	908
BssMI	GATC	2 cut(s)	742, 786
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	908
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	797, 891
BstDEI	CTNAG	3 cut(s)	6, 777, 1164
BstDSI	CCRYGG	1 cut(s)	908
BstF5I	GGATG	1 cut(s)	1086
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	2 cut(s)	745, 789
BstMBI	GATC	2 cut(s)	742, 786
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 409
BstNSI	RCATGY	2 cut(s)	799, 846
BstSFI	CTRYAG	3 cut(s)	339, 1118, 1158
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BstZI	CGGCCG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	20, 164, 473
BtgI	CCRYGG	1 cut(s)	908
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	1086
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 634
Cac8I	GCNNGC	2 cut(s)	797, 891
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	433
CviAII	CATG	7 cut(s)	254, 275, 796, 843, 909, 1135, 1152
DdeI	CTNAG	3 cut(s)	6, 777, 1164
DpnI	GATC	2 cut(s)	744, 788
DpnII	GATC	2 cut(s)	742, 786
EaeI	YGGCCR	1 cut(s)	18
EagI	CGGCCG	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	908
Eco24I	GRGCYC	2 cut(s)	71, 708
Eco52I	CGGCCG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	908
EcoT38I	GRGCYC	2 cut(s)	71, 708
ErhI	CCWWGG	1 cut(s)	908
FaeI	CATG	7 cut(s)	257, 278, 799, 846, 912, 1138, 1155
FaqI	GGGAC	5 cut(s)	26, 234, 1088, 1133, 1155
FatI	CATG	7 cut(s)	253, 274, 795, 842, 908, 1134, 1151
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	2 cut(s)	21, 165
FokI	GGATG	1 cut(s)	1093
FriOI	GRGCYC	2 cut(s)	71, 708
Fsp4HI	GCNGC	2 cut(s)	21, 165
FspBI	CTAG	2 cut(s)	123, 569
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	2 cut(s)	21, 165
GsaI	CCCAGC	1 cut(s)	1074
GsuI	CTGGAG	1 cut(s)	923
HaeIII	GGCC	3 cut(s)	20, 164, 473
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	7 cut(s)	257, 278, 799, 846, 912, 1138, 1155
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	6 cut(s)	14, 182, 199, 480, 1003, 1053
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	124, 164, 470
Hpy166II	GTNNAC	2 cut(s)	288, 379
Hpy188I	TCNGA	1 cut(s)	1096
Hpy188III	TCNNGA	4 cut(s)	275, 380, 790, 934
Hpy8I	GTNNAC	2 cut(s)	288, 379
HpyAV	CCTTC	3 cut(s)	662, 747, 954
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	247, 861
HpyCH4V	TGCA	8 cut(s)	283, 426, 449, 542, 589, 842, 974, 1084
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 409
HpyF3I	CTNAG	3 cut(s)	6, 777, 1164
HpySE526I	ACGT	2 cut(s)	247, 861
Hsp92II	CATG	7 cut(s)	257, 278, 799, 846, 912, 1138, 1155
HspAI	GCGC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	786
Kzo9I	GATC	2 cut(s)	742, 786
LmnI	GCTCC	1 cut(s)	904
LweI	GCATC	5 cut(s)	298, 483, 576, 961, 1071
MaeI	CTAG	2 cut(s)	123, 569
MaeII	ACGT	2 cut(s)	247, 861
MaeIII	GTNAC	5 cut(s)	112, 137, 313, 644, 862
MalI	GATC	2 cut(s)	744, 788
MboI	GATC	2 cut(s)	742, 786
MboII	GAAGA	5 cut(s)	208, 323, 409, 1012, 1083
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	2 cut(s)	71, 708
MluCI	AATT	5 cut(s)	674, 819, 913, 922, 940
MlyI	GAGTC	2 cut(s)	8, 474
MmeI	TCCRAC	1 cut(s)	1106
MseI	TTAA	4 cut(s)	27, 603, 810, 984
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	335
Mva1269I	GAATGC	2 cut(s)	327, 526
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	29, 409
NcoI	CCATGG	1 cut(s)	908
NdeII	GATC	2 cut(s)	742, 786
NlaIII	CATG	7 cut(s)	257, 278, 799, 846, 912, 1138, 1155
NlaIV	GGNNCC	1 cut(s)	906
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	799, 846
PaeI	GCATGC	1 cut(s)	799
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	2 cut(s)	327, 526
PfeI	GAWTC	4 cut(s)	182, 199, 1003, 1053
PkrI	GCNGC	2 cut(s)	22, 166
PleI	GAGTC	2 cut(s)	8, 474
PpsI	GAGTC	2 cut(s)	8, 474
PspFI	CCCAGC	1 cut(s)	1070
PspN4I	GGNNCC	1 cut(s)	906
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	742
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	27, 603, 810, 984
SatI	GCNGC	2 cut(s)	21, 165
Sau3AI	GATC	2 cut(s)	742, 786
SchI	GAGTC	2 cut(s)	8, 474
SduI	GDGCHC	2 cut(s)	71, 708
SfaNI	GCATC	5 cut(s)	298, 483, 576, 961, 1071
SfcI	CTRYAG	3 cut(s)	339, 1118, 1158
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	934
SmoI	CTYRAG	1 cut(s)	934
SpeI	ACTAGT	1 cut(s)	122
SphI	GCATGC	1 cut(s)	799
Sse9I	AATT	5 cut(s)	674, 819, 913, 922, 940
SsiI	CCGC	4 cut(s)	21, 165, 639, 997
SspI	AATATT	1 cut(s)	982
SspMI	CTAG	2 cut(s)	123, 569
StyI	CCWWGG	1 cut(s)	908
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	2 cut(s)	250, 864
TaqI	TCGA	2 cut(s)	76, 148
TasI	AATT	5 cut(s)	674, 819, 913, 922, 940
TauI	GCSGC	2 cut(s)	23, 167
TfiI	GAWTC	4 cut(s)	182, 199, 1003, 1053
Tru1I	TTAA	4 cut(s)	27, 603, 810, 984
Tru9I	TTAA	4 cut(s)	27, 603, 810, 984
TscAI	CASTG	2 cut(s)	433, 634
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	263, 270, 291
TspRI	CASTG	2 cut(s)	433, 634
XapI	RAATTY	2 cut(s)	674, 940
XceI	RCATGY	2 cut(s)	799, 846
XspI	CTAG	2 cut(s)	123, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.