Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0014918

Physical Location & Seq

Genomic Coordinates Forward (+)

139144 .. 139668

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgaactattcaatccaaaccccccttcttcttcttcttgttcatattgttttcttcaatgtgcaaacccaatcccaaagcactgatctaatatccaaaacatgcaagaaaacaccccactttgacctttgtctctcgtctctccaatcaagccctcagagctcaaactcagacatttcaggcttggctcacataatggctgatcttgttctgtccaatgcaactgatacactggattacatccatggcctactcaagcaatccccagaagcagatttgcagaagcctttggcaaactgtgcagagttgtacattccagtggtgaagtacactctcccacagtcaattgatgctctcagtaatggccattatgggtttgccaactacggcatttctgatgctgcaaaggaagctgaggcttgtgagaaggggttttccggggagtcgccgttgacagataggaacactcttgtgagcagtctcgctgaagtagctgtggctatcatcaagttagtgcagggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

174

Amino Acids

18.74

Weight (kDa)

5.02

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17130
fragaria_vesca	FvH4_4g20180
malus_domestica	MD13G1149800.v1.1 MD16G1150200.v1.1
prunus_persica	Prupe.1G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0425861
rosa_laevigata	RLG00000007334
rosa_multiflora	Rmu_co8423965.1_g000001 Rmu_sc0002091.1_g000032 Rmu_ssc0000281.1_g000037
rosa_roxburghii	Rroxscaffold_5G00367840
rosa_rugosa	Rorug04G0207000
rosa_samantha	Rh4AG264100 Rh4CG282500 Rh4DG266300
rosa_wichuraiana	Rw4G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	311, 329
AgsI	TTSAA	2 cut(s)	12, 58
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	3 cut(s)	162, 413, 494
AluI	AGCT	3 cut(s)	162, 413, 494
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	3 cut(s)	137, 144, 485
AoxI	GGCC	2 cut(s)	247, 364
ApeKI	GCWGC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	403, 433
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	3 cut(s)	137, 144, 485
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	340, 388
BoxI	GACNNNNGTC	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	244, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bse1I	ACTGG	2 cut(s)	237, 317
BseDI	CCNNGG	2 cut(s)	244, 438
BseGI	GGATG	1 cut(s)	240
BseMII	CTCAG	4 cut(s)	170, 183, 370, 405
BseNI	ACTGG	2 cut(s)	237, 317
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	249, 366
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	438
BsmAI	GTCTC	3 cut(s)	137, 144, 485
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	249, 366
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	85, 202
Bsp19I	CCATGG	1 cut(s)	244
BspANI	GGCC	2 cut(s)	249, 366
BspCNI	CTCAG	4 cut(s)	169, 182, 369, 406
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	237, 317
BssECI	CCNNGG	2 cut(s)	244, 438
BssMI	GATC	2 cut(s)	85, 202
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	299, 342
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	156, 169, 356, 414
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	88, 205
BstMAI	GTCTC	3 cut(s)	137, 144, 485
BstMBI	GATC	2 cut(s)	85, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 299, 410, 491
BstNSI	RCATGY	1 cut(s)	105
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	249, 366
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	81, 230, 324
Csp6I	GTAC	2 cut(s)	310, 328
CviAII	CATG	2 cut(s)	102, 245
CviQI	GTAC	2 cut(s)	310, 328
DdeI	CTNAG	4 cut(s)	156, 169, 356, 414
DpnI	GATC	2 cut(s)	87, 204
DpnII	GATC	2 cut(s)	85, 202
EaeI	YGGCCR	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	2 cut(s)	105, 248
FaiI	YATR	5 cut(s)	45, 103, 194, 246, 372
FatI	CATG	2 cut(s)	101, 244
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	249, 366
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	2 cut(s)	105, 248
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	330, 453
Hpy188I	TCNGA	3 cut(s)	159, 172, 397
Hpy8I	GTNNAC	2 cut(s)	330, 453
HpyAV	CCTTC	2 cut(s)	35, 421
HpyCH4III	ACNGT	2 cut(s)	299, 342
HpyCH4V	TGCA	7 cut(s)	64, 105, 221, 280, 302, 404, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 299, 410, 491
HpyF3I	CTNAG	4 cut(s)	156, 169, 356, 414
Hsp92II	CATG	2 cut(s)	105, 248
Kzo9I	GATC	2 cut(s)	85, 202
LpnPI	CCDG	6 cut(s)	165, 218, 279, 330, 451, 503
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	340, 388
MalI	GATC	2 cut(s)	87, 204
MboI	GATC	2 cut(s)	85, 202
MboII	GAAGA	4 cut(s)	20, 23, 26, 46
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	1 cut(s)	345
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	2 cut(s)	165, 409
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	317, 470
Msp20I	TGGCCA	1 cut(s)	366
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	159, 299, 410, 491
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	85, 202
NlaIII	CATG	2 cut(s)	105, 248
NspI	RCATGY	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	311, 329
RsaNI	GTAC	2 cut(s)	310, 328
RseI	CAYNNNNRTG	2 cut(s)	317, 470
SacI	GAGCTC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	85, 202
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	129, 164, 415, 496
SfaNI	GCATC	2 cut(s)	340, 388
SmiMI	CAYNNNNRTG	2 cut(s)	317, 470
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	299, 342
TasI	AATT	1 cut(s)	345
TatI	WGTACW	2 cut(s)	309, 327
TscAI	CASTG	3 cut(s)	88, 237, 324
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	17, 32
TspRI	CASTG	3 cut(s)	88, 237, 324
XceI	RCATGY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.