Rmu_ssc0000327.1_g000001

APO protein 2

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000327.1
Physical Location & Seq
Forward (+)
1 .. 1699
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000327.1_g000001.1.cds

Sequence Viewer

Length: 1282 bp
ctttgctccggtctgtggtgaagaaatggactttccttccaaacttgggaccctgcagatttcatcaaaatcagaatttctcaatccccacctcttcacttccctcccttcttttcaatttcagaagaatatactcaagctctcattgaagcccagaagagtttcccaattggtggtgaggagtgaggatcctcctcaaaactccgactttcctaagtactattcgaaaagagagaagaagccctttccggtgcccatagtagatttgaggcgtagggcaagggagaggcttaagcagagcaagggcaagcccaaaaagccagtcccacctcccaagaatggcctgctcgtcaagtccctcataccagttgcctatgatgtgtacaatgccagaatcacactgatcaacaacctcaagaaacttttgaaggtggtgcctgtacatgcctgcaggttttgtaatgagattcatgttggaccggttgggcatccgtttaagtcatgtaaagggccggatgctagtatccgaaagggccttcatgattggataacgaatgcatctgtggatgatattttcttgcctgttgaggctttccacttgtttgatcgacttgggaggcggattcctcatgtggagagatttgcaattccgaggattccagcagtagttgagctttgcattcaggctggggtcgatatcccggagtatcccactaagaggaggagaaagccgatcatccgcattgcgaaaagtgagtttgttgatgcagatgagagtgagctgccagaccctgaaggtcctaagggaacggtgttagctgagatacctgattccgagattgtggggccatttaatgaagaggagaagatcttgcttgctgaggaaacgctacgagcatgggaacagatgaggagaggagccaagaggctaatgaagatgtatttggtgagggtttgtgggtattgccctgagattcatgtaggtccaagtgggcacaaagctcagaactgtggtgccttcaagcatcaacagcgaaatgggcagcatggatggcaggctgcggtgctcaatgacttgataccaccgagatatgtgtggcatgtgccggatgtgaatggaccatcattgcaacgggagctgaggagcttctatggacaagcccccgcggtggttgaaatgtgtgttcaggcaggcgctgctgtgccggatgaatgcagaccaactatgagattggatgtggggattccctcaaatgttagagaagctgaaatggtagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

48.11

Weight (kDa)

9.39

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB1I GGYRCC 3 cut(s) 251, 434, 1014
AccB7I CCANNNNNTGG 1 cut(s) 173
AccII CGCG 1 cut(s) 1167
AciI CCGC 5 cut(s) 620, 740, 1062, 1165, 1167
AclWI GGATC 2 cut(s) 183, 196
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 814
AfaI GTAC 3 cut(s) 219, 384, 442
AfiI CCNNNNNNNGG 6 cut(s) 15, 46, 173, 339, 718, 1169
AflII CTTAAG 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 5 cut(s) 117, 149, 428, 1022, 1176
AjuI GAANNNNNNNTTGG 2 cut(s) 927, 959
AluBI AGCT 8 cut(s) 140, 674, 782, 819, 1002, 1139, 1147, 1266
AluI AGCT 8 cut(s) 140, 674, 782, 819, 1002, 1139, 1147, 1266
Alw21I GWGCWC 1 cut(s) 1069
AlwI GGATC 2 cut(s) 183, 196
AlwNI CAGNNNCTG 2 cut(s) 792, 1197
AoxI GGCC 4 cut(s) 341, 510, 533, 846
ApeKI GCWGC 4 cut(s) 782, 1043, 1059, 1197
ApoI RAATTY 1 cut(s) 75
ArsI GACNNNNNNTTYG 2 cut(s) 307, 339
AsiGI ACCGGT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 1197
AspS9I GGNCC 8 cut(s) 49, 477, 510, 533, 798, 846, 984, 1119
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 3 cut(s) 30, 188, 959
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 5 cut(s) 49, 477, 798, 984, 1119
AxyI CCTNAGG 1 cut(s) 802
BaeGI GKGCMC 2 cut(s) 256, 997
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 3 cut(s) 251, 434, 1014
Bbv12I GWGCWC 1 cut(s) 1069
BbvCI CCTCAGC 2 cut(s) 880, 1140
BbvI GCAGC 4 cut(s) 769, 1046, 1055, 1184
BccI CCATC 2 cut(s) 1045, 1130
BciVI GTATCC 2 cut(s) 534, 718
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 702
BfaI CTAG 1 cut(s) 520
BfmI CTRYAG 2 cut(s) 54, 449
BfoI RGCGCY 1 cut(s) 1198
BfrI CTTAAG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 2 cut(s) 534, 718
BglII AGATCT 1 cut(s) 868
BisI GCNGC 4 cut(s) 783, 1044, 1060, 1198
BlsI GCNGC 4 cut(s) 784, 1045, 1061, 1199
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 5 cut(s) 49, 477, 798, 984, 1119
BmgT120I GGNCC 8 cut(s) 49, 477, 510, 533, 798, 846, 984, 1119
BmiI GGNNCC 8 cut(s) 50, 51, 190, 253, 436, 847, 920, 1016
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 5 cut(s) 497, 506, 567, 755, 1034
Bpu10I CCTNAGC 2 cut(s) 880, 1140
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 120, 399
BpuMI CCSGG 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 651, 1165
BsaWI WCCGGW 3 cut(s) 8, 248, 479
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 46, 173, 339, 718, 1169
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 321, 366
Bse21I CCTNAGG 1 cut(s) 802
Bse3DI GCAATG 2 cut(s) 742, 1125
BseDI CCNNGG 2 cut(s) 651, 1165
BseGI GGATG 8 cut(s) 488, 521, 572, 736, 1056, 1115, 1214, 1241
BseLI CCNNNNNNNGG 6 cut(s) 15, 46, 173, 339, 718, 1169
BseMI GCAATG 2 cut(s) 742, 1125
BseMII CTCAG 5 cut(s) 811, 871, 961, 1017, 1131
BseNI ACTGG 2 cut(s) 321, 366
BseRI GAGGAG 8 cut(s) 184, 194, 734, 737, 876, 926, 931, 1157
BseSI GKGCMC 2 cut(s) 256, 997
BseXI GCAGC 4 cut(s) 769, 1046, 1055, 1184
BseYI CCCAGC 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 1167
BshFI GGCC 4 cut(s) 343, 512, 535, 848
BshNI GGYRCC 3 cut(s) 251, 434, 1014
BshTI ACCGGT 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 1069
BsiSI CCGG 7 cut(s) 9, 249, 480, 513, 702, 1107, 1206
BslFI GGGAC 3 cut(s) 62, 309, 341
BslI CCNNNNNNNGG 6 cut(s) 15, 46, 173, 339, 718, 1169
BsmFI GGGAC 3 cut(s) 62, 309, 341
BsmI GAATGC 3 cut(s) 560, 679, 1218
BsnI GGCC 4 cut(s) 343, 512, 535, 848
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 3 cut(s) 256, 997, 1069
Bsp1407I TGTACA 2 cut(s) 382, 440
Bsp143I GATC 5 cut(s) 188, 403, 605, 733, 868
BspACI CCGC 5 cut(s) 620, 740, 1062, 1165, 1167
BspANI GGCC 4 cut(s) 343, 512, 535, 848
BspCNI CTCAG 5 cut(s) 812, 872, 962, 1016, 1132
BspFNI CGCG 1 cut(s) 1167
BspHI TCATGA 1 cut(s) 539
BspLI GGNNCC 8 cut(s) 50, 51, 190, 253, 436, 847, 920, 1016
BspMAI CTGCAG 2 cut(s) 58, 453
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 2 cut(s) 183, 196
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 3 cut(s) 251, 434, 1014
BspTI CTTAAG 1 cut(s) 291
BsrDI GCAATG 2 cut(s) 742, 1125
BsrFI RCCGGY 1 cut(s) 479
BsrGI TGTACA 2 cut(s) 382, 440
BsrI ACTGG 2 cut(s) 321, 366
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 651, 1165
BssMI GATC 5 cut(s) 188, 403, 605, 733, 868
Bst4CI ACNGT 2 cut(s) 812, 1011
Bst6I CTCTTC 3 cut(s) 99, 152, 853
BstAFI CTTAAG 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 1197
BstAUI TGTACA 2 cut(s) 382, 440
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 6 cut(s) 309, 345, 449, 877, 1057, 1193
BstDEI CTNAG 8 cut(s) 214, 715, 802, 820, 880, 970, 1003, 1140
BstDSI CCRYGG 1 cut(s) 1165
BstF5I GGATG 8 cut(s) 488, 521, 572, 736, 1056, 1115, 1214, 1241
BstFNI CGCG 1 cut(s) 1167
BstH2I RGCGCY 1 cut(s) 1198
BstHHI GCGC 1 cut(s) 1197
BstKTI GATC 5 cut(s) 191, 406, 608, 736, 871
BstMBI GATC 5 cut(s) 188, 403, 605, 733, 868
BstMWI GCNNNNNNNGC 6 cut(s) 317, 1031, 1040, 1052, 1136, 1197
BstNSI RCATGY 2 cut(s) 447, 1104
BstSCI CCNGG 1 cut(s) 700
BstSFI CTRYAG 2 cut(s) 54, 449
BstSLI GKGCMC 2 cut(s) 256, 997
BstUI CGCG 1 cut(s) 1167
BstV1I GCAGC 4 cut(s) 769, 1046, 1055, 1184
BstX2I RGATCY 2 cut(s) 188, 868
BstYI RGATCY 2 cut(s) 188, 868
Bsu36I CCTNAGG 1 cut(s) 802
BsuI GTATCC 2 cut(s) 534, 718
BsuRI GGCC 4 cut(s) 343, 512, 535, 848
BtgI CCRYGG 1 cut(s) 1165
BtsCI GGATG 8 cut(s) 488, 521, 572, 736, 1056, 1115, 1214, 1241
BtsIMutI CAGTG 1 cut(s) 399
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 6 cut(s) 309, 345, 449, 877, 1057, 1193
CaiI CAGNNNCTG 2 cut(s) 792, 1197
CciI TCATGA 1 cut(s) 539
CfoI GCGC 1 cut(s) 1197
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 8 cut(s) 49, 477, 510, 533, 798, 846, 984, 1119
Cfr42I CCGCGG 1 cut(s) 1168
Csp6I GTAC 3 cut(s) 218, 383, 441
CspAI ACCGGT 1 cut(s) 479
CviAII CATG 9 cut(s) 444, 471, 502, 540, 630, 898, 978, 1047, 1101
CviQI GTAC 3 cut(s) 218, 383, 441
DdeI CTNAG 8 cut(s) 214, 715, 802, 820, 880, 970, 1003, 1140
DpnI GATC 5 cut(s) 190, 405, 607, 735, 870
DpnII GATC 5 cut(s) 188, 403, 605, 733, 868
Eam1104I CTCTTC 3 cut(s) 99, 152, 853
EarI CTCTTC 3 cut(s) 99, 152, 853
EciI GGCGGA 1 cut(s) 635
Eco32I GATATC 1 cut(s) 698
Eco47I GGWCC 5 cut(s) 49, 477, 798, 984, 1119
Eco57I CTGAAG 1 cut(s) 814
Eco81I CCTNAGG 1 cut(s) 802
EcoO109I RGGNCCY 3 cut(s) 49, 533, 798
EcoRV GATATC 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 560
FaeI CATG 9 cut(s) 447, 474, 505, 543, 633, 901, 981, 1050, 1104
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 3 cut(s) 62, 309, 341
FatI CATG 9 cut(s) 443, 470, 501, 539, 629, 897, 977, 1046, 1100
FauI CCCGC 1 cut(s) 1172
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 783, 1044, 1060, 1198
FokI GGATG 8 cut(s) 475, 528, 579, 723, 1063, 1122, 1221, 1248
Fsp4HI GCNGC 4 cut(s) 783, 1044, 1060, 1198
FspBI CTAG 1 cut(s) 520
GlaI GCGC 1 cut(s) 1196
GluI GCNGC 4 cut(s) 783, 1044, 1060, 1198
GsaI CCCAGC 1 cut(s) 691
HaeII RGCGCY 1 cut(s) 1198
HaeIII GGCC 4 cut(s) 343, 512, 535, 848
HapII CCGG 7 cut(s) 9, 249, 480, 513, 702, 1107, 1206
HhaI GCGC 1 cut(s) 1197
Hin1II CATG 9 cut(s) 447, 474, 505, 543, 633, 901, 981, 1050, 1104
Hin6I GCGC 1 cut(s) 1195
HinP1I GCGC 1 cut(s) 1195
HinfI GANTC 7 cut(s) 394, 467, 623, 656, 831, 974, 1244
HpaII CCGG 7 cut(s) 9, 249, 480, 513, 702, 1107, 1206
HphI GGTGA 3 cut(s) 30, 188, 959
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 7 cut(s) 74, 124, 206, 528, 652, 836, 1006
Hpy188III TCNNGA 2 cut(s) 416, 540
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 6 cut(s) 46, 118, 422, 546, 789, 1028
HpyCH4III ACNGT 2 cut(s) 812, 1011
HpyCH4V TGCA 8 cut(s) 56, 451, 558, 645, 679, 768, 1130, 1216
HpyF10VI GCNNNNNNNGC 6 cut(s) 317, 1031, 1040, 1052, 1136, 1197
HpyF3I CTNAG 8 cut(s) 214, 715, 802, 820, 880, 970, 1003, 1140
Hsp92II CATG 9 cut(s) 447, 474, 505, 543, 633, 901, 981, 1050, 1104
HspAI GCGC 1 cut(s) 1195
KflI GGGWCCC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 403
KspI CCGCGG 1 cut(s) 1168
Kzo9I GATC 5 cut(s) 188, 403, 605, 733, 868
LmnI GCTCC 4 cut(s) 11, 918, 1136, 1144
Lsp1109I GCAGC 4 cut(s) 769, 1046, 1055, 1184
LweI GCATC 5 cut(s) 497, 506, 567, 755, 1034
MaeI CTAG 1 cut(s) 520
MalI GATC 5 cut(s) 190, 405, 607, 735, 870
MboI GATC 5 cut(s) 188, 403, 605, 733, 868
MboII GAAGA 8 cut(s) 33, 86, 137, 169, 248, 870, 878, 947
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 2 cut(s) 188, 868
MhlI GDGCHC 3 cut(s) 256, 997, 1069
MluCI AATT 4 cut(s) 75, 117, 168, 646
MmeI TCCRAC 2 cut(s) 229, 455
Mph1103I ATGCAT 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 3 cut(s) 292, 496, 853
MspA1I CMGCKG 1 cut(s) 1167
MspCI CTTAAG 1 cut(s) 291
MspI CCGG 7 cut(s) 9, 249, 480, 513, 702, 1107, 1206
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 3 cut(s) 560, 679, 1218
MvnI CGCG 1 cut(s) 1167
MwoI GCNNNNNNNGC 6 cut(s) 317, 1031, 1040, 1052, 1136, 1197
NciI CCSGG 1 cut(s) 702
NdeII GATC 5 cut(s) 188, 403, 605, 733, 868
NlaIII CATG 9 cut(s) 447, 474, 505, 543, 633, 901, 981, 1050, 1104
NlaIV GGNNCC 8 cut(s) 50, 51, 190, 253, 436, 847, 920, 1016
NsiI ATGCAT 1 cut(s) 560
NspI RCATGY 2 cut(s) 447, 1104
NspV TTCGAA 1 cut(s) 225
PagI TCATGA 1 cut(s) 539
PctI GAATGC 3 cut(s) 560, 679, 1218
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 7 cut(s) 394, 467, 623, 656, 831, 974, 1244
PflMI CCANNNNNTGG 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 4 cut(s) 784, 1045, 1061, 1199
PpuMI RGGWCCY 2 cut(s) 49, 798
Psp5II RGGWCCY 2 cut(s) 49, 798
PspFI CCCAGC 1 cut(s) 687
PspN4I GGNNCC 8 cut(s) 50, 51, 190, 253, 436, 847, 920, 1016
PspPI GGNCC 8 cut(s) 49, 477, 510, 533, 798, 846, 984, 1119
PspPPI RGGWCCY 2 cut(s) 49, 798
PstI CTGCAG 2 cut(s) 58, 453
PstNI CAGNNNCTG 2 cut(s) 792, 1197
PsuI RGATCY 2 cut(s) 188, 868
RsaI GTAC 3 cut(s) 219, 384, 442
RsaNI GTAC 3 cut(s) 218, 383, 441
SacII CCGCGG 1 cut(s) 1168
SaqAI TTAA 3 cut(s) 292, 496, 853
SatI GCNGC 4 cut(s) 783, 1044, 1060, 1198
Sau3AI GATC 5 cut(s) 188, 403, 605, 733, 868
Sau96I GGNCC 8 cut(s) 49, 477, 510, 533, 798, 846, 984, 1119
SbfI CCTGCAGG 1 cut(s) 453
ScaI AGTACT 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 702
SdaI CCTGCAGG 1 cut(s) 453
SduI GDGCHC 3 cut(s) 256, 997, 1069
SfaNI GCATC 5 cut(s) 497, 506, 567, 755, 1034
SfcI CTRYAG 2 cut(s) 54, 449
Sfr303I CCGCGG 1 cut(s) 1168
SfuI TTCGAA 1 cut(s) 225
SgrBI CCGCGG 1 cut(s) 1168
SinI GGWCC 5 cut(s) 49, 477, 798, 984, 1119
SmlI CTYRAG 3 cut(s) 135, 291, 414
SmoI CTYRAG 3 cut(s) 135, 291, 414
Sse8387I CCTGCAGG 1 cut(s) 453
Sse9I AATT 4 cut(s) 75, 117, 168, 646
SsiI CCGC 5 cut(s) 620, 740, 1062, 1165, 1167
SspMI CTAG 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 812, 1011
TaqI TCGA 3 cut(s) 225, 608, 694
TasI AATT 4 cut(s) 75, 117, 168, 646
TatI WGTACW 3 cut(s) 217, 382, 440
TfiI GAWTC 7 cut(s) 394, 467, 623, 656, 831, 974, 1244
Tru1I TTAA 3 cut(s) 292, 496, 853
Tru9I TTAA 3 cut(s) 292, 496, 853
TscAI CASTG 1 cut(s) 406
TseI GCWGC 4 cut(s) 782, 1043, 1059, 1197
TspDTI ATGAA 7 cut(s) 52, 459, 528, 871, 948, 966, 1225
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 291
VpaK11BI GGWCC 5 cut(s) 49, 477, 798, 984, 1119
XapI RAATTY 1 cut(s) 75
XceI RCATGY 2 cut(s) 447, 1104
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 520
ZrmI AGTACT 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.