Rorug06G0244300

APO protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008942
Physical Location & Seq
Forward (+)
38992347 .. 38993315
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0244300.1

Sequence Viewer

Length: 969 bp
ATGGATGTGTTGAAGAATGTGCTTGTGTCAACTTCAAATGGGGATCCTTATAAGGATCTATGGCGGTGTATTTGGAGAGCGAAGATCCCTGGCAAGGTTAGCATTTGTGCATGGCGTGCATGCAATAACCTCCTACCTACACGGGATCGTCTCTTCACAAAGGGATATGAAGGCCCTATGCAGTGTATTCTATGCAACTATCCAGTCGAAGATGTATCGCATGTTTTCTGCAAATGTGCAGTAGCTGCTAAAATCTTGAAGGCTCCACCTTTTCAATTACAGCATACTATTCTGCCATCCCTAAACTTTAAGGAATGGATGCTCGAGCGTGCAACCTCTTTAAAGCCGGAACTCTTTGCCAAACTATCGATGATACTGTGGCCACTATGGAGGAACAGAAATAACTGTCTCTGGAATGGATCCAAACAGACAGCACATGACATCTCCCTAAGCAGCTTTGCATGGCTCGAAGACTTTCAGAAAGCCCGTCAGTCTACTACTGCGGGCAACAATGCACAGCAGGAAAAGGTATGGGAACCAGCTGCATATGGGGCCTTGAAACTTAACGTCGATGCAGCTTTTCTCCCTCAACACACAAAAGGAGGTATTGGAGGAGTCATCCGTGATGCTCAGGGCAAGTTTGTGGCTGCTTTTGCCAGTCCAGTGGCGCATACTGCATCGCCAAAACAGTGTGAACTGATTGCAATCAGAGCGGGTCTTGATCTCCTTCACTCACTTCGAATACAGCACGTCATAGTGGAGAGTGACTGTATGGAAGCTATTGCTGAAATTCAATGTCGGGATCATACGTTTCTTGCTAATGGAGGGCTTATTGATGACATCAAACATGCTGCTGCCCAAGTCCATTCCATTCAGATACGACATACACCACGTTCTTGTAATCGGGTTGCGCATAGGCTTGCAGCCATAGGTTTTGAGGCATCGATCTCATCATGTAATCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APO_RNA-bind

Protein Analysis

322

Amino Acids

35.82

Weight (kDa)

8.95

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 15 - 84 1.7e-16 zinc-binding in reverse transcriptase
RVT_3 PF13456 189 - 309 1.3e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
Acc16I TGCGCA 1 cut(s) 912
AccBSI CCGCTC 1 cut(s) 713
AccI GTMKAC 1 cut(s) 494
AciI CCGC 3 cut(s) 64, 503, 713
AclWI GGATC 8 cut(s) 38, 51, 63, 79, 153, 414, 427, 810
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 1 cut(s) 789
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 6 cut(s) 13, 36, 259, 275, 559, 794
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 5 cut(s) 245, 456, 542, 578, 779
AluI AGCT 5 cut(s) 245, 456, 542, 578, 779
Alw26I GTCTC 2 cut(s) 155, 413
AlwI GGATC 8 cut(s) 38, 51, 63, 79, 153, 414, 427, 810
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 3 cut(s) 172, 380, 552
ApeKI GCWGC 8 cut(s) 245, 453, 542, 575, 647, 851, 854, 923
ApoI RAATTY 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 2 cut(s) 670, 913
AspS9I GGNCC 2 cut(s) 173, 552
AsuII TTCGAA 1 cut(s) 739
AvaI CYCGRG 1 cut(s) 323
BalI TGGCCA 1 cut(s) 382
BamHI GGATCC 2 cut(s) 43, 419
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 8 cut(s) 232, 465, 529, 587, 634, 838, 841, 935
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 155, 413
BisI GCNGC 8 cut(s) 246, 454, 543, 576, 648, 852, 855, 924
BlsI GCNGC 8 cut(s) 247, 455, 544, 577, 649, 853, 856, 925
Bme1390I CCNGG 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 173, 552
BmiI GGNNCC 5 cut(s) 45, 264, 421, 537, 553
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 5 cut(s) 309, 562, 616, 686, 950
BpiI GAAGAC 1 cut(s) 477
Bpu10I CCTNAGC 2 cut(s) 449, 630
Bpu14I TTCGAA 1 cut(s) 739
Bsa29I ATCGAT 2 cut(s) 368, 944
BsaBI GATNNNNATC 1 cut(s) 704
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 203, 657, 662
Bse8I GATNNNNATC 1 cut(s) 704
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 2 cut(s) 368, 944
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 4 cut(s) 10, 296, 324, 618
BseJI GATNNNNATC 1 cut(s) 704
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 3 cut(s) 203, 657, 662
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 8 cut(s) 232, 465, 529, 587, 634, 838, 841, 935
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 3 cut(s) 174, 382, 554
BshVI ATCGAT 2 cut(s) 368, 944
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 155, 413
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 3 cut(s) 174, 382, 554
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 739
Bsp143I GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
BspACI CCGC 3 cut(s) 64, 503, 713
BspANI GGCC 3 cut(s) 174, 382, 554
BspCNI CTCAG 1 cut(s) 643
BspDI ATCGAT 2 cut(s) 368, 944
BspLI GGNNCC 5 cut(s) 45, 264, 421, 537, 553
BspPI GGATC 8 cut(s) 38, 51, 63, 79, 153, 414, 427, 810
BspT104I TTCGAA 1 cut(s) 739
BsrBI CCGCTC 1 cut(s) 713
BsrI ACTGG 3 cut(s) 203, 657, 662
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 4 cut(s) 378, 407, 690, 770
Bst6I CTCTTC 1 cut(s) 158
BstAPI GCANNNNNTGC 2 cut(s) 116, 245
BstBI TTCGAA 1 cut(s) 739
BstC8I GCNNGC 5 cut(s) 117, 121, 330, 505, 921
BstDEI CTNAG 2 cut(s) 449, 630
BstF5I GGATG 4 cut(s) 10, 296, 324, 618
BstHHI GCGC 2 cut(s) 670, 913
BstKTI GATC 8 cut(s) 46, 58, 87, 148, 422, 724, 805, 948
BstMAI GTCTC 2 cut(s) 155, 413
BstMBI GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
BstMWI GCNNNNNNNGC 7 cut(s) 99, 116, 245, 551, 653, 674, 710
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 3 cut(s) 123, 224, 851
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 8 cut(s) 232, 465, 529, 587, 634, 838, 841, 935
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 4 cut(s) 43, 55, 84, 419
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 4 cut(s) 43, 55, 84, 419
Bsu15I ATCGAT 2 cut(s) 368, 944
BsuRI GGCC 3 cut(s) 174, 382, 554
BsuTUI ATCGAT 2 cut(s) 368, 944
BtgZI GCGATG 1 cut(s) 663
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 4 cut(s) 10, 296, 324, 618
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 3 cut(s) 188, 669, 695
Cac8I GCNNGC 5 cut(s) 117, 121, 330, 505, 921
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 2 cut(s) 670, 913
Cfr13I GGNCC 2 cut(s) 173, 552
ClaI ATCGAT 2 cut(s) 368, 944
CviAII CATG 7 cut(s) 111, 120, 221, 437, 462, 848, 954
DdeI CTNAG 2 cut(s) 449, 630
DpnI GATC 8 cut(s) 45, 57, 86, 147, 421, 723, 804, 947
DpnII GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
DraI TTTAAA 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 323
EcoO109I RGGNCCY 2 cut(s) 173, 552
EcoRII CCWGG 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 7 cut(s) 114, 123, 224, 440, 465, 851, 957
FatI CATG 7 cut(s) 110, 119, 220, 436, 461, 847, 953
FauI CCCGC 2 cut(s) 496, 706
FauNDI CATATG 1 cut(s) 547
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 8 cut(s) 246, 454, 543, 576, 648, 852, 855, 924
FokI GGATG 4 cut(s) 17, 283, 331, 605
Fsp4HI GCNGC 8 cut(s) 246, 454, 543, 576, 648, 852, 855, 924
FspI TGCGCA 1 cut(s) 912
GlaI GCGC 2 cut(s) 669, 912
GluI GCNGC 8 cut(s) 246, 454, 543, 576, 648, 852, 855, 924
HaeIII GGCC 3 cut(s) 174, 382, 554
HapII CCGG 1 cut(s) 347
HhaI GCGC 2 cut(s) 670, 913
Hin1II CATG 7 cut(s) 114, 123, 224, 440, 465, 851, 957
Hin6I GCGC 2 cut(s) 668, 911
HinP1I GCGC 2 cut(s) 668, 911
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 615
HpaII CCGG 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 30, 495, 695
Hpy188I TCNGA 3 cut(s) 480, 710, 876
Hpy188III TCNNGA 4 cut(s) 256, 412, 719, 800
Hpy8I GTNNAC 3 cut(s) 30, 495, 695
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 3 cut(s) 164, 253, 737
HpyCH4III ACNGT 4 cut(s) 378, 407, 690, 770
HpyCH4IV ACGT 4 cut(s) 567, 750, 809, 892
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 116, 245, 551, 653, 674, 710
HpyF3I CTNAG 2 cut(s) 449, 630
HpySE526I ACGT 4 cut(s) 567, 750, 809, 892
Hsp92II CATG 7 cut(s) 114, 123, 224, 440, 465, 851, 957
HspAI GCGC 2 cut(s) 668, 911
Kzo9I GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 8 cut(s) 232, 465, 529, 587, 634, 838, 841, 935
LweI GCATC 5 cut(s) 309, 562, 616, 686, 950
MaeII ACGT 4 cut(s) 567, 750, 809, 892
MaeIII GTNAC 1 cut(s) 764
MalI GATC 8 cut(s) 45, 57, 86, 147, 421, 723, 804, 947
MbiI CCGCTC 1 cut(s) 713
MboI GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
MboII GAAGA 5 cut(s) 25, 94, 145, 221, 482
MflI RGATCY 4 cut(s) 43, 55, 84, 419
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 2 cut(s) 275, 789
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 1 cut(s) 624
MnlI CCTC 8 cut(s) 140, 346, 384, 596, 597, 605, 818, 931
Mox20I TGGCCA 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 474
MscI TGGCCA 1 cut(s) 382
MseI TTAA 3 cut(s) 309, 341, 564
Msp20I TGGCCA 1 cut(s) 382
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 7 cut(s) 99, 116, 245, 551, 653, 674, 710
NdeI CATATG 1 cut(s) 547
NdeII GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
NlaIII CATG 7 cut(s) 114, 123, 224, 440, 465, 851, 957
NlaIV GGNNCC 5 cut(s) 45, 264, 421, 537, 553
NmuCI GTSAC 1 cut(s) 764
NsbI TGCGCA 1 cut(s) 912
NspI RCATGY 3 cut(s) 123, 224, 851
NspV TTCGAA 1 cut(s) 739
PaeI GCATGC 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 474
PkrI GCNGC 8 cut(s) 247, 455, 544, 577, 649, 853, 856, 925
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 5 cut(s) 45, 264, 421, 537, 553
PspPI GGNCC 2 cut(s) 173, 552
PspXI VCTCGAGB 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 4 cut(s) 43, 55, 84, 419
PvuII CAGCTG 1 cut(s) 542
SaqAI TTAA 3 cut(s) 309, 341, 564
SatI GCNGC 8 cut(s) 246, 454, 543, 576, 648, 852, 855, 924
Sau3AI GATC 8 cut(s) 43, 55, 84, 145, 419, 721, 802, 945
Sau96I GGNCC 2 cut(s) 173, 552
SchI GAGTC 1 cut(s) 624
ScrFI CCNGG 1 cut(s) 90
SfaNI GCATC 5 cut(s) 309, 562, 616, 686, 950
Sfr274I CTCGAG 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 739
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 123
Sse9I AATT 2 cut(s) 275, 789
SsiI CCGC 3 cut(s) 64, 503, 713
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 4 cut(s) 378, 407, 690, 770
TaiI ACGT 4 cut(s) 570, 753, 812, 895
TaqI TCGA 7 cut(s) 207, 324, 368, 468, 570, 739, 944
TasI AATT 2 cut(s) 275, 789
Tru1I TTAA 3 cut(s) 309, 341, 564
Tru9I TTAA 3 cut(s) 309, 341, 564
TscAI CASTG 3 cut(s) 188, 669, 695
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 8 cut(s) 245, 453, 542, 575, 647, 851, 854, 923
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 3 cut(s) 188, 669, 695
XapI RAATTY 1 cut(s) 789
XceI RCATGY 3 cut(s) 123, 224, 851
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.