Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000373.1

Orthogroup ID

OG0009337

Physical Location & Seq

Genomic Coordinates Forward (+)

27277 .. 33387

Gene Structure 6111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

atgaaatcctacctctttgcacaagacgagcatgtacggaatattgttgaaaacagatggaagacaccagtggtttcaagcaaaagtgaaggatcctccacaagcattccaaagccaaggaaagattggacagatgaagagcggcttctttctctttgtgatgctctcacaccaccaccacactccattctctcagaccctgagaatcatcatcactcgctccaaaccctaatccttcttccccgccaaggctctacgctcaagcctcaagtagagaccatgctcgaagtctataggaacagctccgtcgattggaagccgtcgccggtcgttgccctagccaccagcgtcgacgactcgcaggtcgccgccgcccgcgccgacggctccgtcgagatttggctcgtctcccccggcgccgtcggatggcactgtcagctgacgattcatggagaccctaacacgagcgtgtcgtcgctcatttggtgccgggctggctcgaaaggcttgccttgtgggcggttgttctcttctagcctcgatggctcggtttcgcattgggatctttttaatttgaagcagacgactgttttggattctgtgggggtctcaatctttaatatggccgtggcaccctgtgttaatgatacagagaatgggtttttgaatgataatgggggtgatcctgaaaccagtgatagtgaaaccagtgacagcgaggatgattccgactcagacgatgatcatgcaccatcagttcttgtgaacccgcgcgtggcattagctggtggtgatggttttctgcaaatttacagtattaatgatgcagatgagtttgtatacactaaatccctgcctagggtcaatggtagtgttttgagtgtggcgtggagtcccgatgcaaagtttatatatgcagggagtactgatggcatgataaggatctgggatgctagaggaggcattgaaaaacataggattacagttggactcggtggcttgggtagcggatctgaactctgtgtgtgggcgttactttctctgaggtgcgggacccttgtaagtgcagacagtactggaagtgttcagttttgggacagtcagcatggaactctactgcaagcacattcatatcacaagggtgacgtgaaagctctggcagctgctcccagccataatcgggtgttctctgctggttctgatggtcaggttattctttacaagctctctagtgagacgctgggatctagtgttgggtcttctcctaatgtaatgaagaaatggatctacgttggttatacaagagctcatacacatgatgttagggctttggcagtggctgtaccaatcagcagagaagatcccttaccagatcaaggtagaaaaagagcccgtcgtaaggacaagcctgttgattttggttatcttaaatgggcacatttgggtgttcctatgcttatctctgctggtgatgacacaaagctctttacctaccctgttaaggagttcacgcagttttctccgcatgatatctgccctgcgcctcagagagtatccattcaattggcacctaatacagagttcagtcaaacatcattgcttcttgttcaaggttctcattcgttggatatcttgcgcgtacgagtaaaagctggtgccttttttgatatggctcgtggctcttcaggaggcctagcctcaactaatgggctgtttcaaattaagtcatctcggaagatcatttgcagcaccatatctaattcaggggtgttttttgcttattctgaccatgtgaaaattagcctgtttgagttgaagaagtgtattcgatcaggaaaaaaagaagtgaagtgtaaagttggcgaaagtgaattgactcttaataaaagagaacttcctcgaaaactaccatttgctcattcgatggtttttagttttgattcttctcgcttgatgatagcagggcatgatagaagaatatatgttgtggatgtacacagctcagagctagtgcatgctttttccccttgccgtgatttgcatgatcaagaactaccacctggtgagcctcccataacaaaaatgtttacgagttctgatgggcagtggttggctgccatcaactgctttggagatgtatatgtatttaatctggagatacagaggcagcattggttcatttcaagactggacaatgcctctgtgacagctggaggtttttctccaagaaacaataatgttcttataatcacgacctcttcaaatcaggtatatgcattggatgttgaggagagaaaattgggagactggtcgaagcagcacacttatgttcttcccaagagatttcaagaatttccaggcgaagttattgggctctctttcccaccttctcctagtacaacatctgttattgtctatagtgccagggctatgtgcttgattgactttgggatgcctgttgatcgagacgatgaaagtgacatgataaatggtcaggatccagcattgaggaatttccaaagtaatgggaaattaaaacgcaagtggacagacagtcaaactaagagtaaactctttggtaggaagaattttgaatttattccattcggagatccagttttatttataggacatctttccaaaagttccgtgttgaaaatatacaaaccatggatggaagtggttagaaatttcgactctgcacctgtagacaaacatacttttgggacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010015 GO:0010051 GO:0010073 GO:0010101 GO:0010102 GO:0010154 GO:0010305 GO:0010311 GO:0010449 GO:0010817 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051049 GO:0061458 GO:0065007 GO:0065008 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

910

Amino Acids

100.21

Weight (kDa)

6.57

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	110 - 324	5.6e-12	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	259 - 413	6.2e-12	WDR5 beta-propeller domain
WDR55	PF24796	259 - 413	1.5e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	275 - 410	1.7e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	284 - 445	2.9e-10	CDC20/Fizzy WD40 domain
WD40	PF00400	290 - 317	1.7e-07	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	355 - 414	5.8e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27470 AT4G07410 AT4G07410
fragaria_vesca	FvH4_2g32880 FvH4_2g32880 FvH4_2g32880 FvH4_2g32880
malus_domestica	MD08G1080300.v1.1 MD15G1067400.v1.1
prunus_persica	Prupe.1G421300_v2.0.a1
pyrus_communis	pycom08g06630 pycom15g06390
rosa_chinensis	RchiOBHm_Chr6g0309831
rosa_laevigata	RLG00000010532
rosa_multiflora	Rmu_ssc0000373.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159140
rosa_rugosa	Rorug06G0375100
rosa_samantha	Rh6AG488600 Rh6BG498100 Rh6CG502900 Rh6DG489000
rosa_wichuraiana	Rw6G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2246
AasI	GACNNNNNNGTC	2 cut(s)	362, 389
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	5 cut(s)	416, 486, 631, 1567, 1655
AccBSI	CCGCTC	1 cut(s)	142
AccI	GTMKAC	3 cut(s)	351, 840, 2709
AccII	CGCG	4 cut(s)	378, 772, 774, 1638
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	6 cut(s)	807, 2351, 2512, 2587, 2594, 2689
AcuI	CTGAAG	1 cut(s)	1668
AcyI	GRCGYC	1 cut(s)	417
AdeI	CACNNNGTG	2 cut(s)	638, 2063
AfaI	GTAC	7 cut(s)	36, 925, 1075, 1344, 1641, 1995, 2398
AhdI	GACNNNNNGTC	1 cut(s)	2553
AjiI	CACGTC	1 cut(s)	1147
AjnI	CCWGG	3 cut(s)	2059, 2356, 2423
AleI	CACNNNNGTG	2 cut(s)	467, 1140
Alw21I	GWGCWC	1 cut(s)	1309
Alw26I	GTCTC	7 cut(s)	269, 412, 447, 613, 1229, 2298, 2460
AlwNI	CAGNNNCTG	2 cut(s)	200, 1340
AoxI	GGCC	2 cut(s)	624, 1690
ApeKI	GCWGC	6 cut(s)	1160, 1163, 1746, 2114, 2167, 2317
ApoI	RAATTY	6 cut(s)	807, 2351, 2512, 2587, 2594, 2689
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
AseI	ATTAAT	1 cut(s)	819
Asp700I	GAANNNNTTC	1 cut(s)	2598
AspA2I	CCTAGG	1 cut(s)	857
AspLEI	GCGC	5 cut(s)	380, 419, 774, 1543, 1638
AspS9I	GGNCC	1 cut(s)	1053
AsuC2I	CCSGG	2 cut(s)	414, 491
AsuHPI	GGTGA	5 cut(s)	692, 803, 1154, 1481, 2075
AvaII	GGWCC	1 cut(s)	1053
AvrII	CCTAGG	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	1438
BamHI	GGATCC	2 cut(s)	92, 2497
BanI	GGYRCC	5 cut(s)	416, 486, 631, 1567, 1655
BanII	GRGCYC	3 cut(s)	1309, 1393, 2376
BarI	GAAGNNNNNNTAC	2 cut(s)	1350, 1382
BauI	CACGAG	2 cut(s)	463, 1674
BbsI	GAAGAC	2 cut(s)	68, 1251
Bbv12I	GWGCWC	1 cut(s)	1309
BbvI	GCAGC	6 cut(s)	1150, 1172, 1758, 2101, 2179, 2329
BceAI	ACGGC	5 cut(s)	304, 400, 404, 611, 2016
BcgI	CGANNNNNNTGC	4 cut(s)	490, 524, 728, 762
BciT130I	CCWGG	3 cut(s)	2061, 2358, 2425
BciVI	GTATCC	1 cut(s)	1564
BclI	TGATCA	2 cut(s)	742, 2044
BcnI	CCSGG	2 cut(s)	414, 491
BcoDI	GTCTC	7 cut(s)	269, 412, 447, 613, 1229, 2298, 2460
BfaI	CTAG	9 cut(s)	338, 534, 858, 954, 1230, 1248, 1694, 2009, 2394
BfmI	CTRYAG	3 cut(s)	292, 2416, 2706
BfoI	RGCGCY	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	1564
BglI	GCCNNNNNGGC	3 cut(s)	495, 517, 543
BisI	GCNGC	9 cut(s)	143, 369, 372, 1161, 1164, 1747, 2115, 2168, 2318
BlnI	CCTAGG	1 cut(s)	857
BlsI	GCNGC	9 cut(s)	144, 370, 373, 1162, 1165, 1748, 2116, 2169, 2319
BmcAI	AGTACT	2 cut(s)	925, 1075
Bme1390I	CCNGG	5 cut(s)	414, 491, 2061, 2358, 2425
Bme18I	GGWCC	1 cut(s)	1053
BmeRI	GACNNNNNGTC	1 cut(s)	2553
BmgBI	CACGTC	1 cut(s)	1147
BmgT120I	GGNCC	1 cut(s)	1053
BmrFI	CCNGG	5 cut(s)	414, 491, 2061, 2358, 2425
BmsI	GCATC	5 cut(s)	151, 814, 889, 940, 2442
BpiI	GAAGAC	2 cut(s)	68, 1251
BpmI	CTGGAG	2 cut(s)	2174, 2232
BpuEI	CTTGAG	2 cut(s)	245, 252
BpuMI	CCSGG	2 cut(s)	414, 491
BsaBI	GATNNNNATC	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	417
BsaI	GGTCTC	3 cut(s)	269, 447, 613
BsaJI	CCNNGG	7 cut(s)	116, 247, 412, 627, 857, 2424, 2669
BsaXI	ACNNNNNCTCC	2 cut(s)	2601, 2631
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	7 cut(s)	68, 693, 708, 1081, 2193, 2312, 2615
Bse3DI	GCAATG	1 cut(s)	1595
Bse8I	GATNNNNATC	1 cut(s)	941
BseBI	CCWGG	3 cut(s)	2061, 2358, 2425
BseDI	CCNNGG	7 cut(s)	116, 247, 412, 627, 857, 2424, 2669
BseGI	GGATG	7 cut(s)	431, 727, 955, 1996, 2287, 2457, 2679
BseJI	GATNNNNATC	1 cut(s)	941
BseMI	GCAATG	1 cut(s)	1595
BseMII	CTCAG	6 cut(s)	192, 207, 747, 1034, 1559, 2016
BseNI	ACTGG	7 cut(s)	68, 693, 708, 1081, 2193, 2312, 2615
BseRI	GAGGAG	2 cut(s)	972, 2303
BseSI	GKGCMC	1 cut(s)	1438
BseXI	GCAGC	6 cut(s)	1150, 1172, 1758, 2101, 2179, 2329
BseYI	CCCAGC	2 cut(s)	1169, 1240
BsgI	GTGCAG	2 cut(s)	1086, 2685
Bsh1236I	CGCG	4 cut(s)	378, 772, 774, 1638
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	626, 1692
BshNI	GGYRCC	5 cut(s)	416, 486, 631, 1567, 1655
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	1309
BsiSI	CCGG	3 cut(s)	326, 414, 490
BsiWI	CGTACG	1 cut(s)	1639
BslFI	GGGAC	3 cut(s)	879, 1066, 1109
BsmAI	GTCTC	7 cut(s)	269, 412, 447, 613, 1229, 2298, 2460
BsmBI	CGTCTC	3 cut(s)	412, 1229, 2460
BsmFI	GGGAC	3 cut(s)	879, 1066, 1109
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	626, 1692
Bso31I	GGTCTC	3 cut(s)	269, 447, 613
Bsp1286I	GDGCHC	4 cut(s)	1309, 1393, 1438, 2376
Bsp1407I	TGTACA	1 cut(s)	1993
Bsp19I	CCATGG	1 cut(s)	2669
BspANI	GGCC	2 cut(s)	626, 1692
BspCNI	CTCAG	6 cut(s)	193, 206, 746, 1035, 1558, 2015
BspFNI	CGCG	4 cut(s)	378, 772, 774, 1638
BspMI	ACCTGC	1 cut(s)	352
BspQI	GCTCTTC	2 cut(s)	132, 1687
BspT107I	GGYRCC	5 cut(s)	416, 486, 631, 1567, 1655
BspTNI	GGTCTC	3 cut(s)	269, 447, 613
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	1595
BsrFI	RCCGGY	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	1993
BsrI	ACTGG	7 cut(s)	68, 693, 708, 1081, 2193, 2312, 2615
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	7 cut(s)	116, 247, 412, 627, 857, 2424, 2669
BssNAI	GTATAC	1 cut(s)	841
BssNI	GRCGYC	1 cut(s)	417
BssSI	CACGAG	2 cut(s)	463, 1674
BssT1I	CCWWGG	4 cut(s)	116, 247, 857, 2669
Bst1107I	GTATAC	1 cut(s)	841
Bst2BI	CACGAG	2 cut(s)	463, 1674
Bst2UI	CCWGG	3 cut(s)	2061, 2358, 2425
Bst4CI	ACNGT	7 cut(s)	434, 589, 815, 985, 1073, 1100, 2555
Bst6I	CTCTTC	4 cut(s)	132, 535, 1687, 2263
BstACI	GRCGYC	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	1993
BstC8I	GCNNGC	5 cut(s)	376, 496, 509, 1122, 2016
BstDEI	CTNAG	7 cut(s)	193, 201, 733, 1043, 1545, 2002, 2562
BstDSI	CCRYGG	2 cut(s)	627, 2669
BstF5I	GGATG	7 cut(s)	431, 727, 955, 1996, 2287, 2457, 2679
BstFNI	CGCG	4 cut(s)	378, 772, 774, 1638
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	5 cut(s)	380, 419, 774, 1543, 1638
BstMAI	GTCTC	7 cut(s)	269, 412, 447, 613, 1229, 2298, 2460
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	9 cut(s)	377, 384, 436, 495, 504, 517, 543, 1005, 1160
BstNI	CCWGG	3 cut(s)	2061, 2358, 2425
BstNSI	RCATGY	2 cut(s)	35, 2018
BstSCI	CCNGG	5 cut(s)	412, 489, 2059, 2356, 2423
BstSFI	CTRYAG	3 cut(s)	292, 2416, 2706
BstSLI	GKGCMC	1 cut(s)	1438
BstUI	CGCG	4 cut(s)	378, 772, 774, 1638
BstV1I	GCAGC	6 cut(s)	1150, 1172, 1758, 2101, 2179, 2329
BstV2I	GAAGAC	2 cut(s)	68, 1251
BstX2I	RGATCY	9 cut(s)	92, 562, 942, 1010, 1244, 1284, 1360, 2497, 2611
BstXI	CCANNNNNNTGG	2 cut(s)	1564, 2525
BstYI	RGATCY	9 cut(s)	92, 562, 942, 1010, 1244, 1284, 1360, 2497, 2611
BstZ17I	GTATAC	1 cut(s)	841
BsuI	GTATCC	1 cut(s)	1564
BsuRI	GGCC	2 cut(s)	626, 1692
BtgI	CCRYGG	2 cut(s)	627, 2669
BtrI	CACGTC	1 cut(s)	1147
BtsCI	GGATG	7 cut(s)	431, 727, 955, 1996, 2287, 2457, 2679
BtsI	GCAGTG	2 cut(s)	1341, 2111
BtsIMutI	CAGTG	6 cut(s)	75, 430, 700, 715, 1341, 2111
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	5 cut(s)	376, 496, 509, 1122, 2016
CaiI	CAGNNNCTG	2 cut(s)	200, 1340
CfoI	GCGC	5 cut(s)	380, 419, 774, 1543, 1638
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	1053
CseI	GACGC	2 cut(s)	337, 1246
CsiI	ACCWGGT	1 cut(s)	2059
Csp6I	GTAC	7 cut(s)	35, 924, 1074, 1343, 1640, 1994, 2397
CviQI	GTAC	7 cut(s)	35, 924, 1074, 1343, 1640, 1994, 2397
DdeI	CTNAG	7 cut(s)	193, 201, 733, 1043, 1545, 2002, 2562
DinI	GGCGCC	1 cut(s)	418
DraIII	CACNNNGTG	2 cut(s)	638, 2063
DrdI	GACNNNNNNGTC	2 cut(s)	362, 389
DriI	GACNNNNNGTC	1 cut(s)	2553
DseDI	GACNNNNNNGTC	2 cut(s)	362, 389
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	4 cut(s)	132, 535, 1687, 2263
Eam1105I	GACNNNNNGTC	1 cut(s)	2553
EarI	CTCTTC	4 cut(s)	132, 535, 1687, 2263
Ecl136II	GAGCTC	1 cut(s)	1307
Eco130I	CCWWGG	4 cut(s)	116, 247, 857, 2669
Eco147I	AGGCCT	1 cut(s)	1692
Eco24I	GRGCYC	3 cut(s)	1309, 1393, 2376
Eco31I	GGTCTC	3 cut(s)	269, 447, 613
Eco32I	GATATC	2 cut(s)	1531, 1630
Eco47I	GGWCC	1 cut(s)	1053
Eco53kI	GAGCTC	1 cut(s)	1307
Eco57I	CTGAAG	1 cut(s)	1668
EcoICRI	GAGCTC	1 cut(s)	1307
EcoO109I	RGGNCCY	1 cut(s)	1053
EcoRII	CCWGG	3 cut(s)	2059, 2356, 2423
EcoRV	GATATC	2 cut(s)	1531, 1630
EcoT14I	CCWWGG	4 cut(s)	116, 247, 857, 2669
EcoT22I	ATGCAT	1 cut(s)	2278
EcoT38I	GRGCYC	3 cut(s)	1309, 1393, 2376
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	4 cut(s)	116, 247, 857, 2669
Esp3I	CGTCTC	3 cut(s)	412, 1229, 2460
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	3 cut(s)	879, 1066, 1109
FauI	CCCGC	4 cut(s)	251, 383, 777, 1043
FbaI	TGATCA	2 cut(s)	742, 2044
FblI	GTMKAC	3 cut(s)	351, 840, 2709
Fnu4HI	GCNGC	9 cut(s)	143, 369, 372, 1161, 1164, 1747, 2115, 2168, 2318
FokI	GGATG	7 cut(s)	438, 734, 962, 2003, 2294, 2464, 2686
FriOI	GRGCYC	3 cut(s)	1309, 1393, 2376
Fsp4HI	GCNGC	9 cut(s)	143, 369, 372, 1161, 1164, 1747, 2115, 2168, 2318
FspBI	CTAG	9 cut(s)	338, 534, 858, 954, 1230, 1248, 1694, 2009, 2394
GlaI	GCGC	5 cut(s)	379, 418, 773, 1542, 1637
GluI	GCNGC	9 cut(s)	143, 369, 372, 1161, 1164, 1747, 2115, 2168, 2318
GsaI	CCCAGC	2 cut(s)	1173, 1244
GsuI	CTGGAG	2 cut(s)	2174, 2232
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	626, 1692
HapII	CCGG	3 cut(s)	326, 414, 490
HgaI	GACGC	2 cut(s)	337, 1246
HhaI	GCGC	5 cut(s)	380, 419, 774, 1543, 1638
Hin1I	GRCGYC	1 cut(s)	417
Hin6I	GCGC	5 cut(s)	378, 417, 772, 1541, 1636
HinP1I	GCGC	5 cut(s)	378, 417, 772, 1541, 1636
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HpaII	CCGG	3 cut(s)	326, 414, 490
HphI	GGTGA	5 cut(s)	692, 803, 1154, 1481, 2075
Hpy166II	GTNNAC	9 cut(s)	352, 766, 841, 1509, 1996, 2088, 2547, 2570, 2710
Hpy8I	GTNNAC	9 cut(s)	352, 766, 841, 1509, 1996, 2088, 2547, 2570, 2710
Hpy99I	CGWCG	9 cut(s)	311, 325, 353, 356, 386, 395, 425, 478, 1398
HpyAV	CCTTC	3 cut(s)	83, 245, 2397
HpyCH4III	ACNGT	7 cut(s)	434, 589, 815, 985, 1073, 1100, 2555
HpyCH4IV	ACGT	2 cut(s)	1146, 1290
HpyF10VI	GCNNNNNNNGC	9 cut(s)	377, 384, 436, 495, 504, 517, 543, 1005, 1160
HpyF3I	CTNAG	7 cut(s)	193, 201, 733, 1043, 1545, 2002, 2562
HpySE526I	ACGT	2 cut(s)	1146, 1290
Hsp92I	GRCGYC	1 cut(s)	417
HspAI	GCGC	5 cut(s)	378, 417, 772, 1541, 1636
KasI	GGCGCC	1 cut(s)	416
KflI	GGGWCCC	1 cut(s)	1053
Ksp22I	TGATCA	2 cut(s)	742, 2044
LguI	GCTCTTC	2 cut(s)	132, 1687
LmnI	GCTCC	4 cut(s)	225, 308, 392, 1171
Lsp1109I	GCAGC	6 cut(s)	1150, 1172, 1758, 2101, 2179, 2329
LweI	GCATC	5 cut(s)	151, 814, 889, 940, 2442
MabI	ACCWGGT	1 cut(s)	2059
MaeI	CTAG	9 cut(s)	338, 534, 858, 954, 1230, 1248, 1694, 2009, 2394
MaeII	ACGT	2 cut(s)	1146, 1290
MaeIII	GTNAC	5 cut(s)	710, 1032, 1142, 2203, 2477
MbiI	CCGCTC	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	1562
MflI	RGATCY	9 cut(s)	92, 562, 942, 1010, 1244, 1284, 1360, 2497, 2611
MhlI	GDGCHC	4 cut(s)	1309, 1393, 1438, 2376
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	6 cut(s)	350, 725, 901, 984, 1870, 2690
MmeI	TCCRAC	4 cut(s)	403, 753, 967, 1605
Mph1103I	ATGCAT	1 cut(s)	2278
MroXI	GAANNNNTTC	1 cut(s)	2598
MslI	CAYNNNNRTG	5 cut(s)	467, 1140, 1314, 1443, 2325
MspA1I	CMGCKG	3 cut(s)	439, 1163, 2210
MspI	CCGG	3 cut(s)	326, 414, 490
MspR9I	CCNGG	5 cut(s)	414, 491, 2061, 2358, 2425
MunI	CAATTG	1 cut(s)	1562
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	3 cut(s)	2061, 2358, 2425
MvnI	CGCG	4 cut(s)	378, 772, 774, 1638
MwoI	GCNNNNNNNGC	9 cut(s)	377, 384, 436, 495, 504, 517, 543, 1005, 1160
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	2 cut(s)	414, 491
NcoI	CCATGG	1 cut(s)	2669
NmuCI	GTSAC	4 cut(s)	710, 1142, 2203, 2477
NsiI	ATGCAT	1 cut(s)	2278
NspI	RCATGY	2 cut(s)	35, 2018
OliI	CACNNNNGTG	2 cut(s)	467, 1140
PaeI	GCATGC	1 cut(s)	2018
PceI	AGGCCT	1 cut(s)	1692
PciSI	GCTCTTC	2 cut(s)	132, 1687
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 470
PctI	GAATGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	2598
PfeI	GAWTC	5 cut(s)	205, 445, 596, 725, 1940
Pfl23II	CGTACG	1 cut(s)	1639
PkrI	GCNGC	9 cut(s)	144, 370, 373, 1162, 1165, 1748, 2116, 2169, 2319
PleI	GAGTC	6 cut(s)	350, 725, 900, 984, 1870, 2690
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	6 cut(s)	350, 725, 900, 984, 1870, 2690
PpuMI	RGGWCCY	1 cut(s)	1053
PshBI	ATTAAT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	2246
Psp124BI	GAGCTC	1 cut(s)	1309
Psp5II	RGGWCCY	1 cut(s)	1053
Psp6I	CCWGG	3 cut(s)	2059, 2356, 2423
PspFI	CCCAGC	2 cut(s)	1169, 1240
PspGI	CCWGG	3 cut(s)	2059, 2356, 2423
PspLI	CGTACG	1 cut(s)	1639
PspPI	GGNCC	1 cut(s)	1053
PspPPI	RGGWCCY	1 cut(s)	1053
PstNI	CAGNNNCTG	2 cut(s)	200, 1340
PsuI	RGATCY	9 cut(s)	92, 562, 942, 1010, 1244, 1284, 1360, 2497, 2611
PvuII	CAGCTG	3 cut(s)	439, 1163, 2210
RsaI	GTAC	7 cut(s)	36, 925, 1075, 1344, 1641, 1995, 2398
RsaNI	GTAC	7 cut(s)	35, 924, 1074, 1343, 1640, 1994, 2397
RseI	CAYNNNNRTG	5 cut(s)	467, 1140, 1314, 1443, 2325
SacI	GAGCTC	1 cut(s)	1309
SalI	GTCGAC	1 cut(s)	350
SapI	GCTCTTC	2 cut(s)	132, 1687
SatI	GCNGC	9 cut(s)	143, 369, 372, 1161, 1164, 1747, 2115, 2168, 2318
Sau96I	GGNCC	1 cut(s)	1053
ScaI	AGTACT	2 cut(s)	925, 1075
SchI	GAGTC	6 cut(s)	350, 725, 901, 984, 1870, 2690
ScrFI	CCNGG	5 cut(s)	414, 491, 2061, 2358, 2425
SduI	GDGCHC	4 cut(s)	1309, 1393, 1438, 2376
SexAI	ACCWGGT	1 cut(s)	2059
SfaNI	GCATC	5 cut(s)	151, 814, 889, 940, 2442
SfcI	CTRYAG	3 cut(s)	292, 2416, 2706
SfoI	GGCGCC	1 cut(s)	418
SgrDI	CGTCGACG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	1053
SmiMI	CAYNNNNRTG	5 cut(s)	467, 1140, 1314, 1443, 2325
SmlI	CTYRAG	2 cut(s)	260, 267
SmoI	CTYRAG	2 cut(s)	260, 267
SphI	GCATGC	1 cut(s)	2018
SseBI	AGGCCT	1 cut(s)	1692
SspDI	GGCGCC	1 cut(s)	416
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	9 cut(s)	338, 534, 858, 954, 1230, 1248, 1694, 2009, 2394
SstI	GAGCTC	1 cut(s)	1309
StuI	AGGCCT	1 cut(s)	1692
StyD4I	CCNGG	5 cut(s)	412, 489, 2059, 2356, 2423
StyI	CCWWGG	4 cut(s)	116, 247, 857, 2669
TaaI	ACNGT	7 cut(s)	434, 589, 815, 985, 1073, 1100, 2555
TaiI	ACGT	2 cut(s)	1149, 1293
TatI	WGTACW	4 cut(s)	923, 1073, 1993, 2396
TauI	GCSGC	3 cut(s)	145, 371, 374
TfiI	GAWTC	5 cut(s)	205, 445, 596, 725, 1940
TscAI	CASTG	6 cut(s)	75, 437, 700, 715, 1341, 2111
TseFI	GTSAC	4 cut(s)	710, 1142, 2203, 2477
TseI	GCWGC	6 cut(s)	1160, 1163, 1746, 2114, 2167, 2317
Tsp45I	GTSAC	4 cut(s)	710, 1142, 2203, 2477
TspDTI	ATGAA	7 cut(s)	17, 150, 437, 1119, 1289, 2167, 2487
TspGWI	ACGGA	4 cut(s)	52, 295, 379, 2638
TspRI	CASTG	6 cut(s)	75, 437, 700, 715, 1341, 2111
VpaK11BI	GGWCC	1 cut(s)	1053
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	6 cut(s)	807, 2351, 2512, 2587, 2594, 2689
XceI	RCATGY	2 cut(s)	35, 2018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XmaJI	CCTAGG	1 cut(s)	857
XmiI	GTMKAC	3 cut(s)	351, 840, 2709
XmnI	GAANNNNTTC	1 cut(s)	2598
XspI	CTAG	9 cut(s)	338, 534, 858, 954, 1230, 1248, 1694, 2009, 2394
ZrmI	AGTACT	2 cut(s)	925, 1075
Zsp2I	ATGCAT	1 cut(s)	2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.