Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009337

Physical Location & Seq

Genomic Coordinates Reverse (-)

66534591 .. 66539468

Gene Structure 4878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG502900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGATGATAACGATTCATGGAGACCCTAACACGAGCGTTTCGTCGCTCATTTGGTGCCGGGCTGGCTCGAAAGGCTTGCCTTGTGGGCGGTTGTTCTCTTCTAGCCTCGACGGATCGGTTTCGCATTGGGATCTTTTTAATTTGAAGCAGACGACTGTTTTGGATTCTGTGGGGGTCTCAATCTTTAATATGGCCGTGGCACCCTGTGTTAATGATACAGAGAATGGGTTTTTGAATGATAATGGGGGTGATCCTGAAACCAGTGATGGTGAAACCAGTGACAGCGAGGATGATTCCGACTCAGACGATGATCATGCACCATCAGTTCTTGTGAACCCGCGCGTGGCATTAGCTGGTGGTGATGGTTTTCTGCAAATTTACAGTATTAATGATGCAGATGAGTTTGTATACACTAAATCGCTGCCCAGGGTCAATGGTAGTGTTTTGAGTGTGGCGTGGAGTCCCGATGCAAAGTTTATATATGCAGGGAGTACTGATGGCATGATAAGGATCTGGGATGCTAGAGGAGGCATTGAAAAACATAGGATTACAGTTGGACTCGGAGGCTTGGGTAGCGGAACTGAACTCTGTGTGTGGGCGTTACTTTCTCTGAGGTGCGGGACCCTTGTAAGTGCAGACAGTACTGGAAGTGTTCAGTTTTGGGACAGTCAGCATGGAACTCTACTGCAAGCACATTCATATCACAAGGGTGACGTGAAAGCTCTGGCAGCTGCTCCCAGCCATAATCGGGTGTTCTCTGCTGGTTCTGATGGTCAGGTTATTCTTTACAAGCTCTCTAGTGAGACGCTGGGATCTAGTGTTGGGTCTTCTCCTAATGTAATGAAGAAATGGATCTACGTTGGTTATACAAGAGCTCATACACATGATGTTAGGGCTTTGGCAGTGGCTGTACCAATCAGCAGAGAAGATCCCTTACCAGATCAAGGTAGAAAAAGAGCCCGCCGTAAGGACAAGCCTGTTGATTTTGGTTATCTTAAATGGGCACATTTGGGTGTTCCTATGCTTATCTCTGCTGGTGATGACACAAAGCTCTTTACCTACCCTGTTAAGGAGTTCACGCAGTTTTCTCCGCATGATATCTGCCCTGCGCCTCAGAGAGTATCCATTCAATTGGCACCTAATACAGAGTTCAGTCAAACATCATTGCTTCTTGTTCAAGGTTCACATTCGTTGGATATCTTGCGCGTACGAGTAAAAGCTGGTGCCTTTTTTGATATGGCTCGTGGCTCTTCAGGAGGCCTAGCCTCAACTAATGGGCTGTTTCAAATTAAGTCATCTCGGAAGATCATTTGCAGCACCATATCTAATTCAGGGGTGTTTTTTGCTTATTCTGACCATGTGAAAATTAGCCTGTTTGAGTTGAAGAAGTGTATTCGATCAGGAAAAAAAGAAGTGAAGTGTAAAGTTGGCGAAAGTGAATTGACTCTTAATAAAAGAGAACTTCCTCGAAAACTACCATTTGCTCATTCGATGGTTTTTAGTTTTGATTCTTCTCGCTTGATGATAGCAGGGCATGATAGAAGAATATATGTTGTGGATGTACACAGCTCAGAGCTAGTGCATGCCTTTTCCCCTTGCCGTGATTTGCATGATCAAGAACTACCACCTGGTGAGCCTCCCATAACAAAAATGTTTACGAGTTCTGATGGGCAGTGGTTGGCTGCCATCAACTGCTTTGGAGATGTATATGTATTTAATCTGGAGATACAGAGGCAGCATTGGTTCATTTCAAGACTGGATAATGCCTCTGTGACAGCTGGAGGTTTTTCTCCAAGAAACAATAATGTTCTTATAATCACGACCTCTTCAAATCAGGTATATGCATTGGATGTTGAGGAGAGAAAATTGGGAGACTGGTCAAAGCAGCACACTTATGTTCTTCCCAAGAGATTCCAAGAATTTCCAGGCGAAGTTATTGGGCTCTCTTTCCCACCTTCTCCTAGTACAACATCTGTTATTGTCTATAGTGCCAGGGCTATGTGCTTGATTGACTTTGGGATGCCTGTTGATCGAGACGATGAAAGTGACATGATAAATGGTCAGGATCCAGCATTGAGGAATTTCCAAAGTAATGGGAAATTAAAACGCAAGTGGACAGACAGTCAAACTAAGAGTAAACTCTTTGGTAGGAAGAATTTTGAATTTATTCCATTCGGAGATCCAGTTTTATTTATAGGACATCTTTCCAAAAGTTCCGTGTTGAAAATATACAAACCATGGATGGAAGTGGTTAGAAATTTCGACTCTGCACCTGTAGACAAACATACTTTTGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010015 GO:0010051 GO:0010073 GO:0010101 GO:0010102 GO:0010154 GO:0010305 GO:0010311 GO:0010449 GO:0010817 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051049 GO:0061458 GO:0065007 GO:0065008 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

766

Amino Acids

84.26

Weight (kDa)

6.91

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	30 - 179	3.9e-07	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	115 - 269	2.8e-12	WDR5 beta-propeller domain
WDR55	PF24796	115 - 270	1.3e-06	WDR55
Beta-prop_THOC3	PF25174	116 - 267	3.9e-11	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	131 - 266	8.6e-07	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	140 - 301	2.2e-10	CDC20/Fizzy WD40 domain
WD40	PF00400	146 - 173	1.4e-07	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	211 - 270	4.6e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27470 AT4G07410 AT4G07410
fragaria_vesca	FvH4_2g32880 FvH4_2g32880 FvH4_2g32880 FvH4_2g32880
malus_domestica	MD08G1080300.v1.1 MD15G1067400.v1.1
prunus_persica	Prupe.1G421300_v2.0.a1
pyrus_communis	pycom08g06630 pycom15g06390
rosa_chinensis	RchiOBHm_Chr6g0309831
rosa_laevigata	RLG00000010532
rosa_multiflora	Rmu_ssc0000373.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159140
rosa_rugosa	Rorug06G0375100
rosa_samantha	Rh6AG488600 Rh6BG498100 Rh6CG502900 Rh6DG489000
rosa_wichuraiana	Rw6G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1814
AccB1I	GGYRCC	4 cut(s)	54, 199, 1135, 1223
AccI	GTMKAC	2 cut(s)	408, 2277
AccII	CGCG	3 cut(s)	340, 342, 1206
AciI	CCGC	6 cut(s)	88, 338, 576, 618, 961, 1091
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	6 cut(s)	375, 1919, 2080, 2155, 2162, 2257
AcuI	CTGAAG	1 cut(s)	1236
AdeI	CACNNNGTG	2 cut(s)	206, 1631
AfaI	GTAC	6 cut(s)	493, 643, 912, 1209, 1563, 1966
AfiI	CCNNNNNNNGG	5 cut(s)	343, 748, 944, 967, 1069
AhdI	GACNNNNNGTC	1 cut(s)	2121
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	4 cut(s)	425, 1627, 1924, 1991
AleI	CACNNNNGTG	1 cut(s)	708
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	5 cut(s)	15, 181, 797, 1866, 2028
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	2 cut(s)	192, 1258
ApeKI	GCWGC	7 cut(s)	421, 728, 731, 1314, 1682, 1735, 1885
ApoI	RAATTY	6 cut(s)	375, 1919, 2080, 2155, 2162, 2257
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	2166
AspLEI	GCGC	3 cut(s)	342, 1111, 1206
AspS9I	GGNCC	1 cut(s)	621
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	6 cut(s)	260, 281, 371, 722, 1049, 1643
AvaII	GGWCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	1006
BamHI	GGATCC	1 cut(s)	2065
BanI	GGYRCC	4 cut(s)	54, 199, 1135, 1223
BanII	GRGCYC	3 cut(s)	877, 961, 1944
BarI	GAAGNNNNNNTAC	2 cut(s)	918, 950
BauI	CACGAG	2 cut(s)	31, 1242
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	7 cut(s)	408, 718, 740, 1326, 1669, 1747, 1897
BccI	CCATC	9 cut(s)	260, 328, 356, 491, 764, 1486, 1661, 1694, 2236
BceAI	ACGGC	3 cut(s)	179, 948, 1584
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 296, 330
BciT130I	CCWGG	4 cut(s)	427, 1629, 1926, 1993
BciVI	GTATCC	1 cut(s)	1132
BclI	TGATCA	2 cut(s)	310, 1612
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	5 cut(s)	15, 181, 797, 1866, 2028
BfaI	CTAG	7 cut(s)	102, 522, 798, 816, 1262, 1577, 1962
BfmI	CTRYAG	2 cut(s)	1984, 2274
BfuI	GTATCC	1 cut(s)	1132
BglI	GCCNNNNNGGC	2 cut(s)	63, 85
BisI	GCNGC	7 cut(s)	422, 729, 732, 1315, 1683, 1736, 1886
BlsI	GCNGC	7 cut(s)	423, 730, 733, 1316, 1684, 1737, 1887
BmcAI	AGTACT	2 cut(s)	493, 643
Bme1390I	CCNGG	5 cut(s)	59, 427, 1629, 1926, 1993
Bme18I	GGWCC	1 cut(s)	621
BmeRI	GACNNNNNGTC	1 cut(s)	2121
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	7 cut(s)	56, 201, 622, 623, 1137, 1225, 2067
BmrFI	CCNGG	5 cut(s)	59, 427, 1629, 1926, 1993
BmsI	GCATC	4 cut(s)	382, 457, 508, 2010
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	2 cut(s)	1742, 1800
BpuMI	CCSGG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	509
BsaI	GGTCTC	2 cut(s)	15, 181
BsaJI	CCNNGG	5 cut(s)	195, 425, 426, 1992, 2237
BsaXI	ACNNNNNCTCC	2 cut(s)	2169, 2199
Bsc4I	CCNNNNNNNGG	5 cut(s)	343, 748, 944, 967, 1069
Bse1I	ACTGG	6 cut(s)	261, 276, 649, 1761, 1880, 2183
Bse3DI	GCAATG	1 cut(s)	1163
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	4 cut(s)	427, 1629, 1926, 1993
BseDI	CCNNGG	5 cut(s)	195, 425, 426, 1992, 2237
BseGI	GGATG	6 cut(s)	295, 523, 1564, 1855, 2025, 2247
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	5 cut(s)	343, 748, 944, 967, 1069
BseMI	GCAATG	1 cut(s)	1163
BseMII	CTCAG	4 cut(s)	315, 602, 1127, 1584
BseNI	ACTGG	6 cut(s)	261, 276, 649, 1761, 1880, 2183
BseRI	GAGGAG	2 cut(s)	540, 1871
BseSI	GKGCMC	1 cut(s)	1006
BseXI	GCAGC	7 cut(s)	408, 718, 740, 1326, 1669, 1747, 1897
BseYI	CCCAGC	2 cut(s)	737, 808
BsgI	GTGCAG	2 cut(s)	654, 2253
Bsh1236I	CGCG	3 cut(s)	340, 342, 1206
BshFI	GGCC	2 cut(s)	194, 1260
BshNI	GGYRCC	4 cut(s)	54, 199, 1135, 1223
BsiHKAI	GWGCWC	1 cut(s)	877
BsiSI	CCGG	1 cut(s)	58
BsiWI	CGTACG	1 cut(s)	1207
BslFI	GGGAC	3 cut(s)	447, 634, 677
BslI	CCNNNNNNNGG	5 cut(s)	343, 748, 944, 967, 1069
BsmAI	GTCTC	5 cut(s)	15, 181, 797, 1866, 2028
BsmBI	CGTCTC	2 cut(s)	797, 2028
BsmFI	GGGAC	3 cut(s)	447, 634, 677
BsnI	GGCC	2 cut(s)	194, 1260
Bso31I	GGTCTC	2 cut(s)	15, 181
Bsp1286I	GDGCHC	4 cut(s)	877, 961, 1006, 1944
Bsp1407I	TGTACA	1 cut(s)	1561
Bsp19I	CCATGG	1 cut(s)	2237
BspACI	CCGC	6 cut(s)	88, 338, 576, 618, 961, 1091
BspANI	GGCC	2 cut(s)	194, 1260
BspCNI	CTCAG	4 cut(s)	314, 603, 1126, 1583
BspFNI	CGCG	3 cut(s)	340, 342, 1206
BspLI	GGNNCC	7 cut(s)	56, 201, 622, 623, 1137, 1225, 2067
BspQI	GCTCTTC	1 cut(s)	1255
BspT107I	GGYRCC	4 cut(s)	54, 199, 1135, 1223
BspTNI	GGTCTC	2 cut(s)	15, 181
BsrDI	GCAATG	1 cut(s)	1163
BsrGI	TGTACA	1 cut(s)	1561
BsrI	ACTGG	6 cut(s)	261, 276, 649, 1761, 1880, 2183
BssECI	CCNNGG	5 cut(s)	195, 425, 426, 1992, 2237
BssNAI	GTATAC	1 cut(s)	409
BssSI	CACGAG	2 cut(s)	31, 1242
BssT1I	CCWWGG	1 cut(s)	2237
Bst1107I	GTATAC	1 cut(s)	409
Bst2BI	CACGAG	2 cut(s)	31, 1242
Bst2UI	CCWGG	4 cut(s)	427, 1629, 1926, 1993
Bst4CI	ACNGT	6 cut(s)	157, 383, 553, 641, 668, 2123
Bst6I	CTCTTC	3 cut(s)	103, 1255, 1831
BstAUI	TGTACA	1 cut(s)	1561
BstC8I	GCNNGC	5 cut(s)	64, 77, 690, 961, 1584
BstDEI	CTNAG	5 cut(s)	301, 611, 1113, 1570, 2130
BstDSI	CCRYGG	2 cut(s)	195, 2237
BstF5I	GGATG	6 cut(s)	295, 523, 1564, 1855, 2025, 2247
BstFNI	CGCG	3 cut(s)	340, 342, 1206
BstHHI	GCGC	3 cut(s)	342, 1111, 1206
BstMAI	GTCTC	5 cut(s)	15, 181, 797, 1866, 2028
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 72, 85, 573, 728
BstNI	CCWGG	4 cut(s)	427, 1629, 1926, 1993
BstNSI	RCATGY	1 cut(s)	1586
BstSCI	CCNGG	5 cut(s)	57, 425, 1627, 1924, 1991
BstSFI	CTRYAG	2 cut(s)	1984, 2274
BstSLI	GKGCMC	1 cut(s)	1006
BstUI	CGCG	3 cut(s)	340, 342, 1206
BstV1I	GCAGC	7 cut(s)	408, 718, 740, 1326, 1669, 1747, 1897
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	7 cut(s)	130, 510, 812, 852, 928, 2065, 2179
BstXI	CCANNNNNNTGG	2 cut(s)	1132, 2093
BstYI	RGATCY	7 cut(s)	130, 510, 812, 852, 928, 2065, 2179
BstZ17I	GTATAC	1 cut(s)	409
BsuI	GTATCC	1 cut(s)	1132
BsuRI	GGCC	2 cut(s)	194, 1260
BtgI	CCRYGG	2 cut(s)	195, 2237
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	6 cut(s)	295, 523, 1564, 1855, 2025, 2247
BtsI	GCAGTG	2 cut(s)	909, 1679
BtsIMutI	CAGTG	4 cut(s)	268, 283, 909, 1679
Cac8I	GCNNGC	5 cut(s)	64, 77, 690, 961, 1584
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	3 cut(s)	342, 1111, 1206
Cfr13I	GGNCC	1 cut(s)	621
CseI	GACGC	1 cut(s)	814
CsiI	ACCWGGT	1 cut(s)	1627
Csp6I	GTAC	6 cut(s)	492, 642, 911, 1208, 1562, 1965
CviQI	GTAC	6 cut(s)	492, 642, 911, 1208, 1562, 1965
DdeI	CTNAG	5 cut(s)	301, 611, 1113, 1570, 2130
DraIII	CACNNNGTG	2 cut(s)	206, 1631
DriI	GACNNNNNGTC	1 cut(s)	2121
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	103, 1255, 1831
Eam1105I	GACNNNNNGTC	1 cut(s)	2121
EarI	CTCTTC	3 cut(s)	103, 1255, 1831
Ecl136II	GAGCTC	1 cut(s)	875
Eco130I	CCWWGG	1 cut(s)	2237
Eco147I	AGGCCT	1 cut(s)	1260
Eco24I	GRGCYC	3 cut(s)	877, 961, 1944
Eco31I	GGTCTC	2 cut(s)	15, 181
Eco32I	GATATC	2 cut(s)	1099, 1198
Eco47I	GGWCC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	875
Eco57I	CTGAAG	1 cut(s)	1236
EcoICRI	GAGCTC	1 cut(s)	875
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRII	CCWGG	4 cut(s)	425, 1627, 1924, 1991
EcoRV	GATATC	2 cut(s)	1099, 1198
EcoT14I	CCWWGG	1 cut(s)	2237
EcoT22I	ATGCAT	1 cut(s)	1846
EcoT38I	GRGCYC	3 cut(s)	877, 961, 1944
ErhI	CCWWGG	1 cut(s)	2237
Esp3I	CGTCTC	2 cut(s)	797, 2028
FaqI	GGGAC	3 cut(s)	447, 634, 677
FauI	CCCGC	3 cut(s)	345, 611, 968
FbaI	TGATCA	2 cut(s)	310, 1612
FblI	GTMKAC	2 cut(s)	408, 2277
Fnu4HI	GCNGC	7 cut(s)	422, 729, 732, 1315, 1683, 1736, 1886
FokI	GGATG	6 cut(s)	302, 530, 1571, 1862, 2032, 2254
FriOI	GRGCYC	3 cut(s)	877, 961, 1944
Fsp4HI	GCNGC	7 cut(s)	422, 729, 732, 1315, 1683, 1736, 1886
FspBI	CTAG	7 cut(s)	102, 522, 798, 816, 1262, 1577, 1962
GlaI	GCGC	3 cut(s)	341, 1110, 1205
GluI	GCNGC	7 cut(s)	422, 729, 732, 1315, 1683, 1736, 1886
GsaI	CCCAGC	2 cut(s)	741, 812
GsuI	CTGGAG	2 cut(s)	1742, 1800
HaeIII	GGCC	2 cut(s)	194, 1260
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	814
HhaI	GCGC	3 cut(s)	342, 1111, 1206
Hin6I	GCGC	3 cut(s)	340, 1109, 1204
HinP1I	GCGC	3 cut(s)	340, 1109, 1204
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	6 cut(s)	260, 281, 371, 722, 1049, 1643
Hpy166II	GTNNAC	9 cut(s)	334, 409, 1077, 1184, 1564, 1656, 2115, 2138, 2278
Hpy8I	GTNNAC	9 cut(s)	334, 409, 1077, 1184, 1564, 1656, 2115, 2138, 2278
Hpy99I	CGWCG	2 cut(s)	46, 113
HpyAV	CCTTC	1 cut(s)	1965
HpyCH4III	ACNGT	6 cut(s)	157, 383, 553, 641, 668, 2123
HpyCH4IV	ACGT	2 cut(s)	714, 858
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 72, 85, 573, 728
HpyF3I	CTNAG	5 cut(s)	301, 611, 1113, 1570, 2130
HpySE526I	ACGT	2 cut(s)	714, 858
HspAI	GCGC	3 cut(s)	340, 1109, 1204
KflI	GGGWCCC	1 cut(s)	621
Ksp22I	TGATCA	2 cut(s)	310, 1612
LguI	GCTCTTC	1 cut(s)	1255
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	7 cut(s)	408, 718, 740, 1326, 1669, 1747, 1897
LweI	GCATC	4 cut(s)	382, 457, 508, 2010
MabI	ACCWGGT	1 cut(s)	1627
MaeI	CTAG	7 cut(s)	102, 522, 798, 816, 1262, 1577, 1962
MaeII	ACGT	2 cut(s)	714, 858
MaeIII	GTNAC	5 cut(s)	278, 600, 710, 1771, 2045
MfeI	CAATTG	1 cut(s)	1130
MflI	RGATCY	7 cut(s)	130, 510, 812, 852, 928, 2065, 2179
MhlI	GDGCHC	4 cut(s)	877, 961, 1006, 1944
MlyI	GAGTC	5 cut(s)	293, 469, 552, 1438, 2258
MmeI	TCCRAC	3 cut(s)	321, 535, 1173
Mph1103I	ATGCAT	1 cut(s)	1846
MroXI	GAANNNNTTC	1 cut(s)	2166
MslI	CAYNNNNRTG	4 cut(s)	708, 882, 1011, 1893
MspA1I	CMGCKG	2 cut(s)	731, 1778
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	5 cut(s)	59, 427, 1629, 1926, 1993
MunI	CAATTG	1 cut(s)	1130
MvaI	CCWGG	4 cut(s)	427, 1629, 1926, 1993
MvnI	CGCG	3 cut(s)	340, 342, 1206
MwoI	GCNNNNNNNGC	5 cut(s)	63, 72, 85, 573, 728
NciI	CCSGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	2237
NlaIV	GGNNCC	7 cut(s)	56, 201, 622, 623, 1137, 1225, 2067
NmuCI	GTSAC	4 cut(s)	278, 710, 1771, 2045
NsiI	ATGCAT	1 cut(s)	1846
NspI	RCATGY	1 cut(s)	1586
OliI	CACNNNNGTG	1 cut(s)	708
PaeI	GCATGC	1 cut(s)	1586
PasI	CCCWGGG	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	1260
PciSI	GCTCTTC	1 cut(s)	1255
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	2166
PfeI	GAWTC	5 cut(s)	13, 164, 293, 1508, 1911
Pfl23II	CGTACG	1 cut(s)	1207
PkrI	GCNGC	7 cut(s)	423, 730, 733, 1316, 1684, 1737, 1887
PleI	GAGTC	5 cut(s)	293, 468, 552, 1438, 2258
PpsI	GAGTC	5 cut(s)	293, 468, 552, 1438, 2258
PpuMI	RGGWCCY	1 cut(s)	621
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	1814
Psp124BI	GAGCTC	1 cut(s)	877
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	4 cut(s)	425, 1627, 1924, 1991
PspFI	CCCAGC	2 cut(s)	737, 808
PspGI	CCWGG	4 cut(s)	425, 1627, 1924, 1991
PspLI	CGTACG	1 cut(s)	1207
PspN4I	GGNNCC	7 cut(s)	56, 201, 622, 623, 1137, 1225, 2067
PspPI	GGNCC	1 cut(s)	621
PspPPI	RGGWCCY	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	7 cut(s)	130, 510, 812, 852, 928, 2065, 2179
PvuII	CAGCTG	2 cut(s)	731, 1778
RsaI	GTAC	6 cut(s)	493, 643, 912, 1209, 1563, 1966
RsaNI	GTAC	6 cut(s)	492, 642, 911, 1208, 1562, 1965
RseI	CAYNNNNRTG	4 cut(s)	708, 882, 1011, 1893
SacI	GAGCTC	1 cut(s)	877
SapI	GCTCTTC	1 cut(s)	1255
SatI	GCNGC	7 cut(s)	422, 729, 732, 1315, 1683, 1736, 1886
Sau96I	GGNCC	1 cut(s)	621
ScaI	AGTACT	2 cut(s)	493, 643
SchI	GAGTC	5 cut(s)	293, 469, 552, 1438, 2258
ScrFI	CCNGG	5 cut(s)	59, 427, 1629, 1926, 1993
SduI	GDGCHC	4 cut(s)	877, 961, 1006, 1944
SexAI	ACCWGGT	1 cut(s)	1627
SfaNI	GCATC	4 cut(s)	382, 457, 508, 2010
SfcI	CTRYAG	2 cut(s)	1984, 2274
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	4 cut(s)	708, 882, 1011, 1893
SphI	GCATGC	1 cut(s)	1586
SseBI	AGGCCT	1 cut(s)	1260
SsiI	CCGC	6 cut(s)	88, 338, 576, 618, 961, 1091
SspMI	CTAG	7 cut(s)	102, 522, 798, 816, 1262, 1577, 1962
SstI	GAGCTC	1 cut(s)	877
StuI	AGGCCT	1 cut(s)	1260
StyD4I	CCNGG	5 cut(s)	57, 425, 1627, 1924, 1991
StyI	CCWWGG	1 cut(s)	2237
TaaI	ACNGT	6 cut(s)	157, 383, 553, 641, 668, 2123
TaiI	ACGT	2 cut(s)	717, 861
TaqI	TCGA	7 cut(s)	68, 108, 1396, 1468, 1490, 2032, 2262
TatI	WGTACW	4 cut(s)	491, 641, 1561, 1964
TfiI	GAWTC	5 cut(s)	13, 164, 293, 1508, 1911
TscAI	CASTG	4 cut(s)	268, 283, 909, 1679
TseFI	GTSAC	4 cut(s)	278, 710, 1771, 2045
TseI	GCWGC	7 cut(s)	421, 728, 731, 1314, 1682, 1735, 1885
Tsp45I	GTSAC	4 cut(s)	278, 710, 1771, 2045
TspDTI	ATGAA	5 cut(s)	5, 687, 857, 1735, 2055
TspGWI	ACGGA	2 cut(s)	126, 2206
TspRI	CASTG	4 cut(s)	268, 283, 909, 1679
VpaK11BI	GGWCC	1 cut(s)	621
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	6 cut(s)	375, 1919, 2080, 2155, 2162, 2257
XceI	RCATGY	1 cut(s)	1586
XmiI	GTMKAC	2 cut(s)	408, 2277
XmnI	GAANNNNTTC	1 cut(s)	2166
XspI	CTAG	7 cut(s)	102, 522, 798, 816, 1262, 1577, 1962
ZrmI	AGTACT	2 cut(s)	493, 643
Zsp2I	ATGCAT	1 cut(s)	1846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.