Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009337

Physical Location & Seq

Genomic Coordinates Reverse (-)

69862819 .. 69876190

Gene Structure 13372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG498100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2673 bp

ATGTTTGTGTATAAGTTAGTGGGTTGGTGTTGGAATTGGGTAAGATCTGAATCAGGAGAAGAGGAAAGGGAGTTACTATCACTGGTTTGGAAGCAAGCAATGCGTTTAGTTCAAGTAACGCTCTGGCCGGCCCAAAAATTAAGGGCTTACAAGGCCTTGACCGCGCCAGGGCTTTCCATGACTAATATTAGAGTCATATATCGGGTCGGATATTATGAAACGAAGCGGTCAAGTTCACTAAAGCGGCGGGCCAGTGCATTGGGACTATGGATCAATCACCAATGGGCTTCACCTAAAATTTCCCAGACCGCAACAAACCCGGTTCACAAGGAATCAATCCCGCGGCTTCTTTCTCTTTGTGATGCTCTCACACCACCACCACACTCCATTCTCTCAGACCCTGAGAATCATCATCACTCGCTCCAAACCCTAATCCTTCTTCCCCGCCAAGGCTCTACGCTCAAGCCTCAAGTAGAGACCATGCTCGAAGTCTATAGGAACAGCTCCGTCGATTGGAAGCCGTCGCCGGTCGTTGCCCTAGCCACCAGCGTCGACGACTCGCAGGTCGCCGCCGCCCGCGCCGACGGCTCCGTCGAGATTTGGCTCGTCTCCCCCGGCGCCGTCGGATGGCACTGTCAGCTGACGATTCATGGAGACCCTAACACGAGCGTTTCGTCGCTCATTTGGTGCCGGGCTGGGTCCAAAGGCTTGCCTTGTGGGCGGTTGTTCTCTTCTAGCCTCGACGGCTCGGTTTCGCATTGGGATCTTTTTAATTTGAAGCAGACGACTGTTTTGGATTCTGTGGGGGTTTCAATCTTTAATATGGCCGTGGCACCCTGTGTTAATGATACAGAGAATGGGTTTTTGAATGATAATGGGGGTGATCCTGAAACCAGTGATGGTGAAACCAGTGACAGCGAGGATGATTCCGACTCAGACGATGATCATGCACCATCAGTTCTTGTGAACCCGCGCGTGGCATTAGCTGGTGGTGATGGTTTTCTGCAAATTTACAGTATTAATGATGCAGATGAGTTTGTATACACTAAATCGCTGCCCAGGGTCAATGGTAGTGTTTTGAGTGTGGCGTGGAGTCCCGATGCAAAGTTTATATATGCAGGGAGTACTGATGGCATGATAAGGATCTGGGATGCTAGAGGAGGCATTGAAAAACATAGGATTACAGTTGGACTCGGAGGCTTGGGTAGCGGAACTGAACTCTGTGTGTGGGCGTTACTTTCTCTGAGGTGCGGGACCCTTGTAAGTGCAGACAGTACTGGAAGTGTTCAGTTTTGGGACAGTCAGCATGGAACTCTACTGCAAGCACATTCATATCACAAGGGTGACGTGAAAGCTCTGGCAGCTGCTCCCAGCCATAATCGGGTGTTCTCTGCTGGTTCTGATGGTCAGGTTATTCTTTACAAGCTCTCTAGTGAGACGCTGGGATCTAGTGTTGGGTCTTCTCCTAATGTAATGAAGAAATGGATCTACGTTGGTTATACAAGAGCTCATACACATGATGTTAGGGCTTTGGCAGTGGCTGTACCAATCAGCAGAGAAGCAGATCCCTTACCAGATCAAGGTAGAAAAAGAGCCCGCCGTAAGGACAAGCCTGTTGATTTTGGTTATCTTAAATGGGCACATTTGGGTGTTCCTATGCTTATCTCTGCTGGTGATGACACAAAGCTCTTTACCTACCCTGTTAAGGAGTTCACGCAGTTTTCTCCGCATGATATCTGCCCTGCGCCTCAGAGAGTATCCATTCAATTGGCACCTAATACAGAGTTCAGTCAAACATCATTGCTTCTTGTTCAAGGTTCACATTCGTTGGATATCTTGCGCGTACGAGTAAAAGCTGGTGCCTTTTTTGATATGGCTCGTGGCTCTTCAGGAGGCCTAGCCTCAACTAATGGGCTGTTTCAAATTAAGTCATCTCGGAAGATCATTTGCAGCACCATATCTAATTCAGGGGTGTTTTTTGCTTATTCTGACCATGTGAAAATTAGCCTGTTTGAGTTGAAGAAGTGTATTCGATCAGGAAAAAAAGAAGTGAAGTGTAAAGTTGGCGAAAGTGAATTGACTCTTAATAAAAGAGAACTTCCTCGAAAACTACCATTTGCTCATTCGATGGTTTTTAGTTTTGATTCTTCTCGCTTGATGATAGCAGGGCATGATAGAAGAATATATGTTGTGGATGTACACAGCTCAGAGCTAGTGCATGCCTTTTCCCCTTGCCGTGATTTGCATGATCAAGAACTACCACCTGGTGAGCCTCCCATAACAAAAATGTTTACGAGTTCTGATGGGCAGTGGTTGGCTGCCATCAACTGCTTTGGAGATGTATATGTATTTAATCTGGAGATACAGAGGCAGCATTGGTTCATTTCAAGACTGGATAATGCCTCTGTGACAGCTGGAGGTTTTTCTCCAAGAAACAATAATGTTCTTATAATCACGACCTCTTCAAATCAGGTATATGCATTGGATGTTGAGGAGAGAAAATTGGGAGACTGGTCGAAGCAGCACACTTATGTTCTTCCCAAGAGATTCCAAGAATTTCCAGGCGAAGTTATTGGGCTCTCTTTCCCACCTTCTCCTAGTACAACATCTGTTATTGTCTATAGTGCCAGGTACCTCCCTGTCCATAATTTGGAATTATGTTATATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010015 GO:0010051 GO:0010073 GO:0010101 GO:0010102 GO:0010154 GO:0010305 GO:0010311 GO:0010449 GO:0010817 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051049 GO:0061458 GO:0065007 GO:0065008 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

890

Amino Acids

98.03

Weight (kDa)

7.62

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	177 - 391	6.5e-12	THOC3 beta-propeller domain
Beta-prop_THOC3	PF25174	326 - 478	3.7e-11	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	326 - 480	3.6e-12	WDR5 beta-propeller domain
WDR55	PF24796	326 - 481	1.6e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	342 - 477	1.1e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	351 - 512	2.8e-10	CDC20/Fizzy WD40 domain
WD40	PF00400	357 - 384	1.6e-07	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	422 - 481	5.6e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27470 AT4G07410 AT4G07410
fragaria_vesca	FvH4_2g32880 FvH4_2g32880 FvH4_2g32880 FvH4_2g32880
malus_domestica	MD08G1080300.v1.1 MD15G1067400.v1.1
prunus_persica	Prupe.1G421300_v2.0.a1
pyrus_communis	pycom08g06630 pycom15g06390
rosa_chinensis	RchiOBHm_Chr6g0309831
rosa_laevigata	RLG00000010532
rosa_multiflora	Rmu_ssc0000373.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159140
rosa_rugosa	Rorug06G0375100
rosa_samantha	Rh6AG488600 Rh6BG498100 Rh6CG502900 Rh6DG489000
rosa_wichuraiana	Rw6G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2450
AasI	GACNNNNNNGTC	2 cut(s)	563, 590
Acc36I	ACCTGC	1 cut(s)	553
Acc65I	GGTACC	1 cut(s)	2631
AccB1I	GGYRCC	6 cut(s)	617, 687, 832, 1771, 1859, 2631
AccB7I	CCANNNNNTGG	1 cut(s)	2650
AccI	GTMKAC	2 cut(s)	552, 1041
AccII	CGCG	6 cut(s)	164, 343, 579, 973, 975, 1842
AclWI	GGATC	7 cut(s)	278, 771, 878, 1151, 1453, 1493, 1559
AcoI	YGGCCR	2 cut(s)	125, 825
AcsI	RAATTY	3 cut(s)	297, 1008, 2555
AcuI	CTGAAG	1 cut(s)	1872
AcyI	GRCGYC	1 cut(s)	618
AdeI	CACNNNGTG	2 cut(s)	839, 2267
AfaI	GTAC	7 cut(s)	1126, 1276, 1545, 1845, 2199, 2602, 2633
AjiI	CACGTC	1 cut(s)	1348
AjnI	CCWGG	5 cut(s)	166, 1058, 2263, 2560, 2627
AleI	CACNNNNGTG	1 cut(s)	1341
Alw21I	GWGCWC	1 cut(s)	1510
Alw26I	GTCTC	5 cut(s)	470, 613, 648, 1430, 2502
AlwI	GGATC	7 cut(s)	278, 771, 878, 1151, 1453, 1493, 1559
AlwNI	CAGNNNCTG	2 cut(s)	401, 1541
AoxI	GGCC	6 cut(s)	125, 129, 153, 249, 825, 1894
ApeKI	GCWGC	7 cut(s)	1054, 1361, 1364, 1950, 2318, 2371, 2521
ApoI	RAATTY	3 cut(s)	297, 1008, 2555
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
AseI	ATTAAT	1 cut(s)	1020
Asp718I	GGTACC	1 cut(s)	2631
AspLEI	GCGC	6 cut(s)	166, 581, 620, 975, 1747, 1842
AspS9I	GGNCC	4 cut(s)	130, 249, 699, 1254
AsuC2I	CCSGG	3 cut(s)	320, 615, 692
AsuHPI	GGTGA	8 cut(s)	269, 282, 893, 914, 1004, 1355, 1685, 2279
AvaII	GGWCC	2 cut(s)	699, 1254
BaeGI	GKGCMC	1 cut(s)	1642
BanI	GGYRCC	6 cut(s)	617, 687, 832, 1771, 1859, 2631
BanII	GRGCYC	3 cut(s)	1510, 1597, 2580
BauI	CACGAG	2 cut(s)	664, 1878
BbsI	GAAGAC	1 cut(s)	1452
Bbv12I	GWGCWC	1 cut(s)	1510
BbvI	GCAGC	7 cut(s)	1041, 1351, 1373, 1962, 2305, 2383, 2533
BccI	CCATC	9 cut(s)	621, 893, 961, 989, 1124, 1397, 2122, 2297, 2330
BceAI	ACGGC	7 cut(s)	505, 601, 605, 760, 812, 1584, 2220
BcgI	CGANNNNNNTGC	2 cut(s)	929, 963
BciT130I	CCWGG	5 cut(s)	168, 1060, 2265, 2562, 2629
BciVI	GTATCC	1 cut(s)	1768
BclI	TGATCA	2 cut(s)	943, 2248
BcnI	CCSGG	3 cut(s)	320, 615, 692
BcoDI	GTCTC	5 cut(s)	470, 613, 648, 1430, 2502
BfaI	CTAG	8 cut(s)	539, 735, 1155, 1431, 1449, 1898, 2213, 2598
BfmI	CTRYAG	2 cut(s)	493, 2620
BfoI	RGCGCY	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	553
BfuI	GTATCC	1 cut(s)	1768
BglI	GCCNNNNNGGC	2 cut(s)	718, 744
BglII	AGATCT	1 cut(s)	44
BmcAI	AGTACT	2 cut(s)	1126, 1276
Bme1390I	CCNGG	8 cut(s)	168, 320, 615, 692, 1060, 2265, 2562, 2629
Bme18I	GGWCC	2 cut(s)	699, 1254
BmgBI	CACGTC	1 cut(s)	1348
BmgT120I	GGNCC	4 cut(s)	130, 249, 699, 1254
BmrFI	CCNGG	8 cut(s)	168, 320, 615, 692, 1060, 2265, 2562, 2629
BmsI	GCATC	4 cut(s)	352, 1015, 1090, 1141
BpiI	GAAGAC	1 cut(s)	1452
BpmI	CTGGAG	2 cut(s)	2378, 2436
BpuEI	CTTGAG	2 cut(s)	446, 453
BpuMI	CCSGG	3 cut(s)	320, 615, 692
BsaBI	GATNNNNATC	2 cut(s)	49, 1142
BsaHI	GRCGYC	1 cut(s)	618
BsaI	GGTCTC	2 cut(s)	470, 648
BsaJI	CCNNGG	7 cut(s)	167, 341, 448, 613, 828, 1058, 1059
Bse118I	RCCGGY	2 cut(s)	127, 526
Bse1I	ACTGG	7 cut(s)	87, 252, 894, 909, 1282, 2397, 2516
Bse3DI	GCAATG	2 cut(s)	105, 1799
Bse8I	GATNNNNATC	2 cut(s)	49, 1142
BseBI	CCWGG	5 cut(s)	168, 1060, 2265, 2562, 2629
BseDI	CCNNGG	7 cut(s)	167, 341, 448, 613, 828, 1058, 1059
BseGI	GGATG	5 cut(s)	632, 928, 1156, 2200, 2491
BseJI	GATNNNNATC	2 cut(s)	49, 1142
BseMI	GCAATG	2 cut(s)	105, 1799
BseMII	CTCAG	6 cut(s)	393, 408, 948, 1235, 1763, 2220
BseNI	ACTGG	7 cut(s)	87, 252, 894, 909, 1282, 2397, 2516
BseRI	GAGGAG	2 cut(s)	1173, 2507
BseSI	GKGCMC	1 cut(s)	1642
BseXI	GCAGC	7 cut(s)	1041, 1351, 1373, 1962, 2305, 2383, 2533
BseYI	CCCAGC	3 cut(s)	695, 1370, 1441
BsgI	GTGCAG	1 cut(s)	1287
Bsh1236I	CGCG	6 cut(s)	164, 343, 579, 973, 975, 1842
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	6 cut(s)	127, 131, 155, 251, 827, 1896
BshNI	GGYRCC	6 cut(s)	617, 687, 832, 1771, 1859, 2631
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	1510
BsiSI	CCGG	5 cut(s)	128, 320, 527, 615, 691
BsiWI	CGTACG	1 cut(s)	1843
BslFI	GGGAC	4 cut(s)	276, 1080, 1267, 1310
BsmAI	GTCTC	5 cut(s)	470, 613, 648, 1430, 2502
BsmBI	CGTCTC	2 cut(s)	613, 1430
BsmFI	GGGAC	4 cut(s)	276, 1080, 1267, 1310
BsnI	GGCC	6 cut(s)	127, 131, 155, 251, 827, 1896
Bso31I	GGTCTC	2 cut(s)	470, 648
Bsp1286I	GDGCHC	4 cut(s)	1510, 1597, 1642, 2580
Bsp1407I	TGTACA	1 cut(s)	2197
BspANI	GGCC	6 cut(s)	127, 131, 155, 251, 827, 1896
BspCNI	CTCAG	6 cut(s)	394, 407, 947, 1236, 1762, 2219
BspFNI	CGCG	6 cut(s)	164, 343, 579, 973, 975, 1842
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	7 cut(s)	278, 771, 878, 1151, 1453, 1493, 1559
BspQI	GCTCTTC	1 cut(s)	1891
BspT107I	GGYRCC	6 cut(s)	617, 687, 832, 1771, 1859, 2631
BspTNI	GGTCTC	2 cut(s)	470, 648
BsrDI	GCAATG	2 cut(s)	105, 1799
BsrFI	RCCGGY	2 cut(s)	127, 526
BsrGI	TGTACA	1 cut(s)	2197
BsrI	ACTGG	7 cut(s)	87, 252, 894, 909, 1282, 2397, 2516
BssAI	RCCGGY	2 cut(s)	127, 526
BssECI	CCNNGG	7 cut(s)	167, 341, 448, 613, 828, 1058, 1059
BssNAI	GTATAC	1 cut(s)	1042
BssNI	GRCGYC	1 cut(s)	618
BssSI	CACGAG	2 cut(s)	664, 1878
BssT1I	CCWWGG	1 cut(s)	448
Bst1107I	GTATAC	1 cut(s)	1042
Bst2BI	CACGAG	2 cut(s)	664, 1878
Bst2UI	CCWGG	5 cut(s)	168, 1060, 2265, 2562, 2629
Bst4CI	ACNGT	6 cut(s)	635, 790, 1016, 1186, 1274, 1301
Bst6I	CTCTTC	4 cut(s)	54, 736, 1891, 2467
BstACI	GRCGYC	1 cut(s)	618
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	2197
BstC8I	GCNNGC	8 cut(s)	96, 129, 249, 577, 710, 1323, 1597, 2220
BstDEI	CTNAG	7 cut(s)	394, 402, 934, 1244, 1749, 2206, 2670
BstDSI	CCRYGG	2 cut(s)	341, 828
BstF5I	GGATG	5 cut(s)	632, 928, 1156, 2200, 2491
BstFNI	CGCG	6 cut(s)	164, 343, 579, 973, 975, 1842
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	6 cut(s)	166, 581, 620, 975, 1747, 1842
BstMAI	GTCTC	5 cut(s)	470, 613, 648, 1430, 2502
BstMCI	CGRYCG	1 cut(s)	531
BstNI	CCWGG	5 cut(s)	168, 1060, 2265, 2562, 2629
BstNSI	RCATGY	1 cut(s)	2222
BstSCI	CCNGG	8 cut(s)	166, 318, 613, 690, 1058, 2263, 2560, 2627
BstSFI	CTRYAG	2 cut(s)	493, 2620
BstSLI	GKGCMC	1 cut(s)	1642
BstUI	CGCG	6 cut(s)	164, 343, 579, 973, 975, 1842
BstV1I	GCAGC	7 cut(s)	1041, 1351, 1373, 1962, 2305, 2383, 2533
BstV2I	GAAGAC	1 cut(s)	1452
BstX2I	RGATCY	6 cut(s)	44, 763, 1143, 1445, 1485, 1564
BstXI	CCANNNNNNTGG	2 cut(s)	259, 1768
BstYI	RGATCY	6 cut(s)	44, 763, 1143, 1445, 1485, 1564
BstZ17I	GTATAC	1 cut(s)	1042
BsuI	GTATCC	1 cut(s)	1768
BsuRI	GGCC	6 cut(s)	127, 131, 155, 251, 827, 1896
BtgI	CCRYGG	2 cut(s)	341, 828
BtrI	CACGTC	1 cut(s)	1348
BtsCI	GGATG	5 cut(s)	632, 928, 1156, 2200, 2491
BtsI	GCAGTG	2 cut(s)	1542, 2315
BtsIMutI	CAGTG	7 cut(s)	80, 259, 631, 901, 916, 1542, 2315
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	8 cut(s)	96, 129, 249, 577, 710, 1323, 1597, 2220
CaiI	CAGNNNCTG	2 cut(s)	401, 1541
CfoI	GCGC	6 cut(s)	166, 581, 620, 975, 1747, 1842
Cfr10I	RCCGGY	2 cut(s)	127, 526
Cfr13I	GGNCC	4 cut(s)	130, 249, 699, 1254
Cfr42I	CCGCGG	1 cut(s)	344
CseI	GACGC	2 cut(s)	538, 1447
CsiI	ACCWGGT	1 cut(s)	2263
Csp6I	GTAC	7 cut(s)	1125, 1275, 1544, 1844, 2198, 2601, 2632
CviQI	GTAC	7 cut(s)	1125, 1275, 1544, 1844, 2198, 2601, 2632
DdeI	CTNAG	7 cut(s)	394, 402, 934, 1244, 1749, 2206, 2670
DinI	GGCGCC	1 cut(s)	619
DraIII	CACNNNGTG	2 cut(s)	839, 2267
DrdI	GACNNNNNNGTC	2 cut(s)	563, 590
DseDI	GACNNNNNNGTC	2 cut(s)	563, 590
EaeI	YGGCCR	2 cut(s)	125, 825
Eam1104I	CTCTTC	4 cut(s)	54, 736, 1891, 2467
EarI	CTCTTC	4 cut(s)	54, 736, 1891, 2467
Ecl136II	GAGCTC	1 cut(s)	1508
Eco130I	CCWWGG	1 cut(s)	448
Eco147I	AGGCCT	2 cut(s)	155, 1896
Eco24I	GRGCYC	3 cut(s)	1510, 1597, 2580
Eco31I	GGTCTC	2 cut(s)	470, 648
Eco32I	GATATC	2 cut(s)	1735, 1834
Eco47I	GGWCC	2 cut(s)	699, 1254
Eco53kI	GAGCTC	1 cut(s)	1508
Eco57I	CTGAAG	1 cut(s)	1872
EcoICRI	GAGCTC	1 cut(s)	1508
EcoO109I	RGGNCCY	1 cut(s)	1254
EcoRII	CCWGG	5 cut(s)	166, 1058, 2263, 2560, 2627
EcoRV	GATATC	2 cut(s)	1735, 1834
EcoT14I	CCWWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	2482
EcoT38I	GRGCYC	3 cut(s)	1510, 1597, 2580
EgeI	GGCGCC	1 cut(s)	619
EheI	GGCGCC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	448
Esp3I	CGTCTC	2 cut(s)	613, 1430
FaqI	GGGAC	4 cut(s)	276, 1080, 1267, 1310
FauI	CCCGC	7 cut(s)	240, 348, 452, 584, 978, 1244, 1604
FbaI	TGATCA	2 cut(s)	943, 2248
FblI	GTMKAC	2 cut(s)	552, 1041
FokI	GGATG	5 cut(s)	639, 935, 1163, 2207, 2498
FriOI	GRGCYC	3 cut(s)	1510, 1597, 2580
FseI	GGCCGGCC	1 cut(s)	131
FspBI	CTAG	8 cut(s)	539, 735, 1155, 1431, 1449, 1898, 2213, 2598
GlaI	GCGC	6 cut(s)	165, 580, 619, 974, 1746, 1841
GsaI	CCCAGC	3 cut(s)	699, 1374, 1445
GsuI	CTGGAG	2 cut(s)	2378, 2436
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	6 cut(s)	127, 131, 155, 251, 827, 1896
HapII	CCGG	5 cut(s)	128, 320, 527, 615, 691
HgaI	GACGC	2 cut(s)	538, 1447
HhaI	GCGC	6 cut(s)	166, 581, 620, 975, 1747, 1842
Hin1I	GRCGYC	1 cut(s)	618
Hin6I	GCGC	6 cut(s)	164, 579, 618, 973, 1745, 1840
HinP1I	GCGC	6 cut(s)	164, 579, 618, 973, 1745, 1840
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HpaII	CCGG	5 cut(s)	128, 320, 527, 615, 691
HphI	GGTGA	8 cut(s)	269, 282, 893, 914, 1004, 1355, 1685, 2279
Hpy166II	GTNNAC	9 cut(s)	236, 325, 553, 967, 1042, 1713, 1820, 2200, 2292
Hpy8I	GTNNAC	9 cut(s)	236, 325, 553, 967, 1042, 1713, 1820, 2200, 2292
Hpy99I	CGWCG	9 cut(s)	512, 526, 554, 557, 587, 596, 626, 679, 746
HpyAV	CCTTC	2 cut(s)	446, 2601
HpyCH4III	ACNGT	6 cut(s)	635, 790, 1016, 1186, 1274, 1301
HpyCH4IV	ACGT	2 cut(s)	1347, 1491
HpyF3I	CTNAG	7 cut(s)	394, 402, 934, 1244, 1749, 2206, 2670
HpySE526I	ACGT	2 cut(s)	1347, 1491
Hsp92I	GRCGYC	1 cut(s)	618
HspAI	GCGC	6 cut(s)	164, 579, 618, 973, 1745, 1840
KasI	GGCGCC	1 cut(s)	617
KflI	GGGWCCC	1 cut(s)	1254
KpnI	GGTACC	1 cut(s)	2635
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Ksp22I	TGATCA	2 cut(s)	943, 2248
KspI	CCGCGG	1 cut(s)	344
LguI	GCTCTTC	1 cut(s)	1891
LmnI	GCTCC	4 cut(s)	426, 509, 593, 1372
Lsp1109I	GCAGC	7 cut(s)	1041, 1351, 1373, 1962, 2305, 2383, 2533
LweI	GCATC	4 cut(s)	352, 1015, 1090, 1141
MabI	ACCWGGT	1 cut(s)	2263
MaeI	CTAG	8 cut(s)	539, 735, 1155, 1431, 1449, 1898, 2213, 2598
MaeII	ACGT	2 cut(s)	1347, 1491
MaeIII	GTNAC	6 cut(s)	72, 115, 911, 1233, 1343, 2407
MfeI	CAATTG	1 cut(s)	1766
MflI	RGATCY	6 cut(s)	44, 763, 1143, 1445, 1485, 1564
MhlI	GDGCHC	4 cut(s)	1510, 1597, 1642, 2580
Mly113I	GGCGCC	1 cut(s)	618
MlyI	GAGTC	6 cut(s)	201, 551, 926, 1102, 1185, 2074
MmeI	TCCRAC	6 cut(s)	11, 187, 604, 954, 1168, 1809
Mph1103I	ATGCAT	1 cut(s)	2482
MroNI	GCCGGC	1 cut(s)	127
MslI	CAYNNNNRTG	4 cut(s)	1341, 1515, 1647, 2529
MspA1I	CMGCKG	4 cut(s)	343, 640, 1364, 2414
MspI	CCGG	5 cut(s)	128, 320, 527, 615, 691
MspR9I	CCNGG	8 cut(s)	168, 320, 615, 692, 1060, 2265, 2562, 2629
MunI	CAATTG	1 cut(s)	1766
MvaI	CCWGG	5 cut(s)	168, 1060, 2265, 2562, 2629
MvnI	CGCG	6 cut(s)	164, 343, 579, 973, 975, 1842
NaeI	GCCGGC	1 cut(s)	129
NarI	GGCGCC	1 cut(s)	618
NciI	CCSGG	3 cut(s)	320, 615, 692
NgoMIV	GCCGGC	1 cut(s)	127
NmuCI	GTSAC	3 cut(s)	911, 1343, 2407
NsiI	ATGCAT	1 cut(s)	2482
NspI	RCATGY	1 cut(s)	2222
OliI	CACNNNNGTG	1 cut(s)	1341
PaeI	GCATGC	1 cut(s)	2222
PasI	CCCWGGG	1 cut(s)	1059
PceI	AGGCCT	2 cut(s)	155, 1896
PciSI	GCTCTTC	1 cut(s)	1891
PcsI	WCGNNNNNNNCGW	2 cut(s)	591, 671
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	8 cut(s)	50, 332, 406, 646, 797, 926, 2144, 2547
Pfl23II	CGTACG	1 cut(s)	1843
PflMI	CCANNNNNTGG	1 cut(s)	2650
PleI	GAGTC	6 cut(s)	200, 551, 926, 1101, 1185, 2074
PluTI	GGCGCC	1 cut(s)	621
PpsI	GAGTC	6 cut(s)	200, 551, 926, 1101, 1185, 2074
PpuMI	RGGWCCY	1 cut(s)	1254
PshBI	ATTAAT	1 cut(s)	1020
PsiI	TTATAA	1 cut(s)	2450
Psp124BI	GAGCTC	1 cut(s)	1510
Psp5II	RGGWCCY	1 cut(s)	1254
Psp6I	CCWGG	5 cut(s)	166, 1058, 2263, 2560, 2627
PspFI	CCCAGC	3 cut(s)	695, 1370, 1441
PspGI	CCWGG	5 cut(s)	166, 1058, 2263, 2560, 2627
PspLI	CGTACG	1 cut(s)	1843
PspPI	GGNCC	4 cut(s)	130, 249, 699, 1254
PspPPI	RGGWCCY	1 cut(s)	1254
PstNI	CAGNNNCTG	2 cut(s)	401, 1541
PsuI	RGATCY	6 cut(s)	44, 763, 1143, 1445, 1485, 1564
PvuII	CAGCTG	3 cut(s)	640, 1364, 2414
RigI	GGCCGGCC	1 cut(s)	131
RsaI	GTAC	7 cut(s)	1126, 1276, 1545, 1845, 2199, 2602, 2633
RsaNI	GTAC	7 cut(s)	1125, 1275, 1544, 1844, 2198, 2601, 2632
RseI	CAYNNNNRTG	4 cut(s)	1341, 1515, 1647, 2529
SacI	GAGCTC	1 cut(s)	1510
SacII	CCGCGG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	1891
Sau96I	GGNCC	4 cut(s)	130, 249, 699, 1254
ScaI	AGTACT	2 cut(s)	1126, 1276
SchI	GAGTC	6 cut(s)	201, 551, 926, 1102, 1185, 2074
ScrFI	CCNGG	8 cut(s)	168, 320, 615, 692, 1060, 2265, 2562, 2629
SduI	GDGCHC	4 cut(s)	1510, 1597, 1642, 2580
SexAI	ACCWGGT	1 cut(s)	2263
SfaNI	GCATC	4 cut(s)	352, 1015, 1090, 1141
SfcI	CTRYAG	2 cut(s)	493, 2620
SfoI	GGCGCC	1 cut(s)	619
Sfr303I	CCGCGG	1 cut(s)	344
SgrBI	CCGCGG	1 cut(s)	344
SgrDI	CGTCGACG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	699, 1254
SmiMI	CAYNNNNRTG	4 cut(s)	1341, 1515, 1647, 2529
SmlI	CTYRAG	2 cut(s)	461, 468
SmoI	CTYRAG	2 cut(s)	461, 468
SphI	GCATGC	1 cut(s)	2222
SseBI	AGGCCT	2 cut(s)	155, 1896
SspDI	GGCGCC	1 cut(s)	617
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	8 cut(s)	539, 735, 1155, 1431, 1449, 1898, 2213, 2598
SstI	GAGCTC	1 cut(s)	1510
StuI	AGGCCT	2 cut(s)	155, 1896
StyD4I	CCNGG	8 cut(s)	166, 318, 613, 690, 1058, 2263, 2560, 2627
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	6 cut(s)	635, 790, 1016, 1186, 1274, 1301
TaiI	ACGT	2 cut(s)	1350, 1494
TaqI	TCGA	9 cut(s)	486, 510, 552, 594, 741, 2032, 2104, 2126, 2516
TatI	WGTACW	4 cut(s)	1124, 1274, 2197, 2600
TauI	GCSGC	4 cut(s)	247, 346, 572, 575
TfiI	GAWTC	8 cut(s)	50, 332, 406, 646, 797, 926, 2144, 2547
TscAI	CASTG	7 cut(s)	87, 259, 638, 901, 916, 1542, 2315
TseFI	GTSAC	3 cut(s)	911, 1343, 2407
TseI	GCWGC	7 cut(s)	1054, 1361, 1364, 1950, 2318, 2371, 2521
Tsp45I	GTSAC	3 cut(s)	911, 1343, 2407
TspDTI	ATGAA	5 cut(s)	231, 638, 1320, 1490, 2371
TspGWI	ACGGA	2 cut(s)	496, 580
TspRI	CASTG	7 cut(s)	87, 259, 638, 901, 916, 1542, 2315
Van91I	CCANNNNNTGG	1 cut(s)	2650
VpaK11BI	GGWCC	2 cut(s)	699, 1254
VspI	ATTAAT	1 cut(s)	1020
XapI	RAATTY	3 cut(s)	297, 1008, 2555
XceI	RCATGY	1 cut(s)	2222
XmiI	GTMKAC	2 cut(s)	552, 1041
XspI	CTAG	8 cut(s)	539, 735, 1155, 1431, 1449, 1898, 2213, 2598
ZrmI	AGTACT	2 cut(s)	1126, 1276
Zsp2I	ATGCAT	1 cut(s)	2482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.