Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009337

Physical Location & Seq

Genomic Coordinates Reverse (-)

64962850 .. 64968431

Gene Structure 5582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG489000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGCTCGAAGTATATAGGAACAGCTCCGTCGATTGGAAGCCGTCGCCGGTCGTTGCCCTAGCCACCAGCGTCGACGACTCGCAGGTCGCCGCTGCCCGCGCCGACGGCTCCGTCGAGATTTGGCTCGTCTCCCCCGGCGCCGTCGGGTGGCACTGTCAGCTGACGATTCATGGAGACCCTAACACGAGTGTTTCGTCGCTCATTTGGTGCCGGGATGGCTTGAAAGGCTTGCCTTGTGGCCGGTTGTTCTCTTCTAGCCTCGACGGCTCGGTTTCGCATTGGGATCTTTTTAATTTGAAGCAGACGACTGTTTTGGATTCTGTGGGGGTCTCAATCTTTAATATGGCCGTGGCACCCTGTGTTAATGATACAGAGAATGGGTTTTTGAATGATAATGGGGGTGATCCTGAAACCAGTGATAGTGAAACCAGTGACAGCGAGGATGATTCCGACTCAGACGATGATCATGCACCATCAGTTCTTGTGAACCCGCGCGTGGCCTTAGCTGGTGGTGATGGTTTTCTGCAAATTTACAGTATTAATGATGCAGATGAGTTTGTATACACTAAATCGCTGCCCAGGGTCAATGGTAGTGTTTTGAGTGTGGCGTGGAGTCCCGATGCAAAGTTTATATATGCAGGGAGTACTGATGGCATGATAAGGATCTGGGATGCTAGAGGAGGCATTGAAAAACATAGGATTACAGTTGGACTCGGAGGCTTGGGTAGCGGATCTGAACTCTGTGTGTGGGCGTTACTTTCTCTGAGGTGCGGGACCCTTGTAAGTGCAGACAGTACTGGAAGTGTTCAGTTTTGGGACAGTCAGCATGGAACTCTACTGCAAGCACATTCATATCACAAGGGTGACGTGAAAGCTCTGGCAGCTGCTCCCAGCCATAATCGGGTGTTCTCTGCTGGTTCTGATGGTCAGGTTATTCTTTACAAGCTCTCTAGTGAGACGCTGGGATCTAGTGTTGGGTCTTCTCCTAATGTAATGAAGAAATGGATCTACGTTGGTTATACAAGAGCTCATACACATGATGTTAGGGCTTTGGCAGTGGCTGTACCAATCAGCAGAGAAGATCCCTTACCAGATCAAGGTAGAAAAAGAGCCCGTCGTAAGGACAAGCCTGTTGATTTTGGTTATCTTAAATGGGCACATTTGGGTGTTCCTATGCTTATCTCTGCTGGTGATGACACAAAGCTCTTTACCTACCCTGTTAAGGAGTTCACGCAGTTTTCTCCGCATGATATCTGCCCTGCGCCTCAGAGAGTATCCATTCAATTGGCACCTAATACAGAGTTCAGTCAAACATCATTGCTTCTTGTTCAAGGTTCTCATTCGTTGGATATCTTGCGCGTACGAGTTAAAGCTGGTGCCTTTTTTGATATGGCTCGTGGCTCTTCAGGAGGCCTAGCCTCAACTAATGGGCTGTTTCAAATTAAGTCATCTCGGAAGATCATTTGCAGCACCATATCTAATTCAGGGGTGTTTTTTGCTTATTCTGACCATGTGAAAATTAGCCTGTTTGAGTTGAAGAAGTGTATTCGATCAGGAAAAAAAGAAGTGAAGTGTAAAGTTGGCGAAAGTGAATTGACTCTTAATAAAAGAGAACTTCCTCGAAAACTACCATTTGCTCATTCGATGGTTTTTAGTTTTGATTCTTCTCGCTTGATGATAGCTGGGCATGATAGAAGAATATATGTTGTGGATGTACACAGCTCAGAGCTAGTGCATGCTTTTTCCCCTTGCCGTGATTTGCATGATCAAGAACTACCACCTGGTGAGCCTCCCATAACAAAAATGTTTACGAGTTCTGATGGGCAGTGGTTGGCTGCCATCAACTGCTTTGGAGATGTATATGTATTTAATCTGGAGATACAGAGGCAGCATTGGTTCATTTCAAGACTGGATAATGCATCTGTGACAGCTGGAGGTTTTTCTCCAAGAAACAATAATGTTCTTATAATCACGACCTCTTCAAATCAGGTATATGCATTGGATGTTGAGGAGAGAAAATTGGGAGACTGGTCGAAGCAGCACACTTATGTTCTTCCCAAGAGATTTCAAGAATTTCCAGGCGAAGTTATTGGGCTCTCTTTCCCACCTTCTCCTAGTACAACATCTGTTATTGTGTATAGTGCCAGGTACCTCCCTGTCCATAATTTGGAATTATGTTATATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010015 GO:0010051 GO:0010073 GO:0010101 GO:0010102 GO:0010154 GO:0010305 GO:0010311 GO:0010449 GO:0010817 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051049 GO:0061458 GO:0065007 GO:0065008 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

729

Amino Acids

79.7

Weight (kDa)

6.22

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	17 - 231	6.9e-12	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	166 - 320	4.3e-12	WDR5 beta-propeller domain
WDR55	PF24796	166 - 321	1e-06	WDR55
Beta-prop_THOC3	PF25174	172 - 318	1e-10	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	182 - 317	1.1e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	191 - 352	2e-10	CDC20/Fizzy WD40 domain
WD40	PF00400	197 - 224	1.3e-07	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	262 - 321	4.3e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27470 AT4G07410 AT4G07410
fragaria_vesca	FvH4_2g32880 FvH4_2g32880 FvH4_2g32880 FvH4_2g32880
malus_domestica	MD08G1080300.v1.1 MD15G1067400.v1.1
prunus_persica	Prupe.1G421300_v2.0.a1
pyrus_communis	pycom08g06630 pycom15g06390
rosa_chinensis	RchiOBHm_Chr6g0309831
rosa_laevigata	RLG00000010532
rosa_multiflora	Rmu_ssc0000373.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159140
rosa_rugosa	Rorug06G0375100
rosa_samantha	Rh6AG488600 Rh6BG498100 Rh6CG502900 Rh6DG489000
rosa_wichuraiana	Rw6G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1967
AasI	GACNNNNNNGTC	2 cut(s)	83, 110
Acc36I	ACCTGC	1 cut(s)	73
Acc65I	GGTACC	1 cut(s)	2148
AccB1I	GGYRCC	6 cut(s)	137, 207, 352, 1288, 1376, 2148
AccB7I	CCANNNNNTGG	1 cut(s)	2167
AccI	GTMKAC	2 cut(s)	72, 561
AccII	CGCG	4 cut(s)	99, 493, 495, 1359
AciI	CCGC	6 cut(s)	90, 97, 491, 729, 771, 1244
AclWI	GGATC	7 cut(s)	291, 398, 671, 739, 973, 1013, 1076
AcoI	YGGCCR	2 cut(s)	238, 345
AcsI	RAATTY	2 cut(s)	528, 2072
AcuI	CTGAAG	1 cut(s)	1389
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	2 cut(s)	359, 1784
AfaI	GTAC	7 cut(s)	646, 796, 1065, 1362, 1716, 2119, 2150
AfiI	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1097, 1120, 1222, 2167
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	4 cut(s)	578, 1780, 2077, 2144
AleI	CACNNNNGTG	1 cut(s)	861
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	5 cut(s)	133, 168, 334, 950, 2019
AlwI	GGATC	7 cut(s)	291, 398, 671, 739, 973, 1013, 1076
AlwNI	CAGNNNCTG	1 cut(s)	1061
AoxI	GGCC	4 cut(s)	238, 345, 498, 1411
ApeKI	GCWGC	8 cut(s)	92, 574, 881, 884, 1467, 1835, 1888, 2038
ApoI	RAATTY	2 cut(s)	528, 2072
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AseI	ATTAAT	1 cut(s)	540
Asp718I	GGTACC	1 cut(s)	2148
AspLEI	GCGC	5 cut(s)	101, 140, 495, 1264, 1359
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	2 cut(s)	135, 212
AsuHPI	GGTGA	5 cut(s)	413, 524, 875, 1202, 1796
AvaII	GGWCC	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	1159
BanI	GGYRCC	6 cut(s)	137, 207, 352, 1288, 1376, 2148
BanII	GRGCYC	3 cut(s)	1030, 1114, 2097
BarI	GAAGNNNNNNTAC	2 cut(s)	1071, 1103
BauI	CACGAG	2 cut(s)	184, 1395
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	1030
BbvI	GCAGC	8 cut(s)	79, 561, 871, 893, 1479, 1822, 1900, 2050
BccI	CCATC	8 cut(s)	209, 481, 509, 644, 917, 1639, 1814, 1847
BceAI	ACGGC	6 cut(s)	25, 121, 125, 280, 332, 1737
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	4 cut(s)	580, 1782, 2079, 2146
BciVI	GTATCC	1 cut(s)	1285
BclI	TGATCA	2 cut(s)	463, 1765
BcnI	CCSGG	2 cut(s)	135, 212
BcoDI	GTCTC	5 cut(s)	133, 168, 334, 950, 2019
BfaI	CTAG	8 cut(s)	59, 255, 675, 951, 969, 1415, 1730, 2115
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	1285
BglI	GCCNNNNNGGC	2 cut(s)	216, 264
BisI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1468, 1836, 1889, 2039
BlsI	GCNGC	9 cut(s)	91, 94, 576, 883, 886, 1469, 1837, 1890, 2040
BmcAI	AGTACT	2 cut(s)	646, 796
Bme1390I	CCNGG	6 cut(s)	135, 212, 580, 1782, 2079, 2146
Bme18I	GGWCC	1 cut(s)	774
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1290, 1378, 2150
BmrFI	CCNGG	6 cut(s)	135, 212, 580, 1782, 2079, 2146
BmsI	GCATC	4 cut(s)	535, 610, 661, 1928
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	2 cut(s)	1895, 1953
Bpu10I	CCTNAGC	1 cut(s)	502
BpuMI	CCSGG	2 cut(s)	135, 212
BsaBI	GATNNNNATC	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	2 cut(s)	168, 334
BsaJI	CCNNGG	4 cut(s)	133, 348, 578, 579
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1097, 1120, 1222, 2167
Bse118I	RCCGGY	2 cut(s)	46, 240
Bse1I	ACTGG	5 cut(s)	414, 429, 802, 1914, 2033
Bse3DI	GCAATG	1 cut(s)	1316
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	4 cut(s)	580, 1782, 2079, 2146
BseDI	CCNNGG	4 cut(s)	133, 348, 578, 579
BseGI	GGATG	5 cut(s)	220, 448, 676, 1717, 2008
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1097, 1120, 1222, 2167
BseMI	GCAATG	1 cut(s)	1316
BseMII	CTCAG	4 cut(s)	468, 755, 1280, 1737
BseNI	ACTGG	5 cut(s)	414, 429, 802, 1914, 2033
BseRI	GAGGAG	2 cut(s)	693, 2024
BseSI	GKGCMC	1 cut(s)	1159
BseXI	GCAGC	8 cut(s)	79, 561, 871, 893, 1479, 1822, 1900, 2050
BseYI	CCCAGC	3 cut(s)	890, 961, 1682
BsgI	GTGCAG	1 cut(s)	807
Bsh1236I	CGCG	4 cut(s)	99, 493, 495, 1359
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	240, 347, 500, 1413
BshNI	GGYRCC	6 cut(s)	137, 207, 352, 1288, 1376, 2148
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiSI	CCGG	4 cut(s)	47, 135, 211, 241
BsiWI	CGTACG	1 cut(s)	1360
BslFI	GGGAC	3 cut(s)	600, 787, 830
BslI	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1097, 1120, 1222, 2167
BsmAI	GTCTC	5 cut(s)	133, 168, 334, 950, 2019
BsmBI	CGTCTC	2 cut(s)	133, 950
BsmFI	GGGAC	3 cut(s)	600, 787, 830
BsnI	GGCC	4 cut(s)	240, 347, 500, 1413
Bso31I	GGTCTC	2 cut(s)	168, 334
Bsp1286I	GDGCHC	4 cut(s)	1030, 1114, 1159, 2097
Bsp1407I	TGTACA	1 cut(s)	1714
BspACI	CCGC	6 cut(s)	90, 97, 491, 729, 771, 1244
BspANI	GGCC	4 cut(s)	240, 347, 500, 1413
BspCNI	CTCAG	4 cut(s)	467, 756, 1279, 1736
BspFNI	CGCG	4 cut(s)	99, 493, 495, 1359
BspLI	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1290, 1378, 2150
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	7 cut(s)	291, 398, 671, 739, 973, 1013, 1076
BspQI	GCTCTTC	1 cut(s)	1408
BspT107I	GGYRCC	6 cut(s)	137, 207, 352, 1288, 1376, 2148
BspTNI	GGTCTC	2 cut(s)	168, 334
BsrDI	GCAATG	1 cut(s)	1316
BsrFI	RCCGGY	2 cut(s)	46, 240
BsrGI	TGTACA	1 cut(s)	1714
BsrI	ACTGG	5 cut(s)	414, 429, 802, 1914, 2033
BssAI	RCCGGY	2 cut(s)	46, 240
BssECI	CCNNGG	4 cut(s)	133, 348, 578, 579
BssNAI	GTATAC	1 cut(s)	562
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	2 cut(s)	184, 1395
Bst1107I	GTATAC	1 cut(s)	562
Bst2BI	CACGAG	2 cut(s)	184, 1395
Bst2UI	CCWGG	4 cut(s)	580, 1782, 2079, 2146
Bst4CI	ACNGT	6 cut(s)	155, 310, 536, 706, 794, 821
Bst6I	CTCTTC	3 cut(s)	256, 1408, 1984
BstACI	GRCGYC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	1714
BstC8I	GCNNGC	4 cut(s)	97, 230, 843, 1737
BstDEI	CTNAG	6 cut(s)	454, 502, 764, 1266, 1723, 2187
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	5 cut(s)	220, 448, 676, 1717, 2008
BstFNI	CGCG	4 cut(s)	99, 493, 495, 1359
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	5 cut(s)	101, 140, 495, 1264, 1359
BstMAI	GTCTC	5 cut(s)	133, 168, 334, 950, 2019
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 105, 157, 216, 225, 264, 726, 881
BstNI	CCWGG	4 cut(s)	580, 1782, 2079, 2146
BstNSI	RCATGY	1 cut(s)	1739
BstSCI	CCNGG	6 cut(s)	133, 210, 578, 1780, 2077, 2144
BstSLI	GKGCMC	1 cut(s)	1159
BstUI	CGCG	4 cut(s)	99, 493, 495, 1359
BstV1I	GCAGC	8 cut(s)	79, 561, 871, 893, 1479, 1822, 1900, 2050
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	1285
BstYI	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1081
BstZ17I	GTATAC	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	1285
BsuRI	GGCC	4 cut(s)	240, 347, 500, 1413
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	5 cut(s)	220, 448, 676, 1717, 2008
BtsI	GCAGTG	2 cut(s)	1062, 1832
BtsIMutI	CAGTG	5 cut(s)	151, 421, 436, 1062, 1832
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	4 cut(s)	97, 230, 843, 1737
CaiI	CAGNNNCTG	1 cut(s)	1061
CfoI	GCGC	5 cut(s)	101, 140, 495, 1264, 1359
Cfr10I	RCCGGY	2 cut(s)	46, 240
Cfr13I	GGNCC	1 cut(s)	774
CseI	GACGC	2 cut(s)	58, 967
CsiI	ACCWGGT	1 cut(s)	1780
Csp6I	GTAC	7 cut(s)	645, 795, 1064, 1361, 1715, 2118, 2149
CviQI	GTAC	7 cut(s)	645, 795, 1064, 1361, 1715, 2118, 2149
DdeI	CTNAG	6 cut(s)	454, 502, 764, 1266, 1723, 2187
DinI	GGCGCC	1 cut(s)	139
DraIII	CACNNNGTG	2 cut(s)	359, 1784
DrdI	GACNNNNNNGTC	2 cut(s)	83, 110
DseDI	GACNNNNNNGTC	2 cut(s)	83, 110
EaeI	YGGCCR	2 cut(s)	238, 345
Eam1104I	CTCTTC	3 cut(s)	256, 1408, 1984
EarI	CTCTTC	3 cut(s)	256, 1408, 1984
Ecl136II	GAGCTC	1 cut(s)	1028
Eco147I	AGGCCT	1 cut(s)	1413
Eco24I	GRGCYC	3 cut(s)	1030, 1114, 2097
Eco31I	GGTCTC	2 cut(s)	168, 334
Eco32I	GATATC	2 cut(s)	1252, 1351
Eco47I	GGWCC	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	1028
Eco57I	CTGAAG	1 cut(s)	1389
EcoICRI	GAGCTC	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	4 cut(s)	578, 1780, 2077, 2144
EcoRV	GATATC	2 cut(s)	1252, 1351
EcoT22I	ATGCAT	2 cut(s)	1921, 1999
EcoT38I	GRGCYC	3 cut(s)	1030, 1114, 2097
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
Esp3I	CGTCTC	2 cut(s)	133, 950
FaqI	GGGAC	3 cut(s)	600, 787, 830
FauI	CCCGC	3 cut(s)	104, 498, 764
FbaI	TGATCA	2 cut(s)	463, 1765
FblI	GTMKAC	2 cut(s)	72, 561
Fnu4HI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1468, 1836, 1889, 2039
FokI	GGATG	5 cut(s)	227, 455, 683, 1724, 2015
FriOI	GRGCYC	3 cut(s)	1030, 1114, 2097
Fsp4HI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1468, 1836, 1889, 2039
FspBI	CTAG	8 cut(s)	59, 255, 675, 951, 969, 1415, 1730, 2115
GlaI	GCGC	5 cut(s)	100, 139, 494, 1263, 1358
GluI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1468, 1836, 1889, 2039
GsaI	CCCAGC	3 cut(s)	894, 965, 1686
GsuI	CTGGAG	2 cut(s)	1895, 1953
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	240, 347, 500, 1413
HapII	CCGG	4 cut(s)	47, 135, 211, 241
HgaI	GACGC	2 cut(s)	58, 967
HhaI	GCGC	5 cut(s)	101, 140, 495, 1264, 1359
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	5 cut(s)	99, 138, 493, 1262, 1357
HinP1I	GCGC	5 cut(s)	99, 138, 493, 1262, 1357
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	9 cut(s)	77, 166, 317, 446, 452, 613, 711, 1597, 1661
HpaII	CCGG	4 cut(s)	47, 135, 211, 241
HphI	GGTGA	5 cut(s)	413, 524, 875, 1202, 1796
Hpy166II	GTNNAC	6 cut(s)	73, 487, 562, 1230, 1717, 1809
Hpy8I	GTNNAC	6 cut(s)	73, 487, 562, 1230, 1717, 1809
HpyAV	CCTTC	1 cut(s)	2118
HpyCH4III	ACNGT	6 cut(s)	155, 310, 536, 706, 794, 821
HpyCH4IV	ACGT	2 cut(s)	867, 1011
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 105, 157, 216, 225, 264, 726, 881
HpyF3I	CTNAG	6 cut(s)	454, 502, 764, 1266, 1723, 2187
HpySE526I	ACGT	2 cut(s)	867, 1011
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	5 cut(s)	99, 138, 493, 1262, 1357
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	774
KpnI	GGTACC	1 cut(s)	2152
Ksp22I	TGATCA	2 cut(s)	463, 1765
LguI	GCTCTTC	1 cut(s)	1408
LmnI	GCTCC	3 cut(s)	29, 113, 892
Lsp1109I	GCAGC	8 cut(s)	79, 561, 871, 893, 1479, 1822, 1900, 2050
LweI	GCATC	4 cut(s)	535, 610, 661, 1928
MabI	ACCWGGT	1 cut(s)	1780
MaeI	CTAG	8 cut(s)	59, 255, 675, 951, 969, 1415, 1730, 2115
MaeII	ACGT	2 cut(s)	867, 1011
MaeIII	GTNAC	4 cut(s)	431, 753, 863, 1924
MfeI	CAATTG	1 cut(s)	1283
MflI	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1081
MhlI	GDGCHC	4 cut(s)	1030, 1114, 1159, 2097
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	5 cut(s)	71, 446, 622, 705, 1591
MmeI	TCCRAC	3 cut(s)	474, 688, 1326
Mph1103I	ATGCAT	2 cut(s)	1921, 1999
MslI	CAYNNNNRTG	4 cut(s)	861, 1035, 1164, 2046
MspA1I	CMGCKG	4 cut(s)	92, 160, 884, 1931
MspI	CCGG	4 cut(s)	47, 135, 211, 241
MspR9I	CCNGG	6 cut(s)	135, 212, 580, 1782, 2079, 2146
MunI	CAATTG	1 cut(s)	1283
MvaI	CCWGG	4 cut(s)	580, 1782, 2079, 2146
MvnI	CGCG	4 cut(s)	99, 493, 495, 1359
MwoI	GCNNNNNNNGC	8 cut(s)	98, 105, 157, 216, 225, 264, 726, 881
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	135, 212
NlaIV	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1290, 1378, 2150
NmuCI	GTSAC	3 cut(s)	431, 863, 1924
NsiI	ATGCAT	2 cut(s)	1921, 1999
NspI	RCATGY	1 cut(s)	1739
OliI	CACNNNNGTG	1 cut(s)	861
PaeI	GCATGC	1 cut(s)	1739
PasI	CCCWGGG	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	1413
PciSI	GCTCTTC	1 cut(s)	1408
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 191
PfeI	GAWTC	4 cut(s)	166, 317, 446, 1661
Pfl23II	CGTACG	1 cut(s)	1360
PflMI	CCANNNNNTGG	1 cut(s)	2167
PkrI	GCNGC	9 cut(s)	91, 94, 576, 883, 886, 1469, 1837, 1890, 2040
PleI	GAGTC	5 cut(s)	71, 446, 621, 705, 1591
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	5 cut(s)	71, 446, 621, 705, 1591
PpuMI	RGGWCCY	1 cut(s)	774
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	1967
Psp124BI	GAGCTC	1 cut(s)	1030
Psp5II	RGGWCCY	1 cut(s)	774
Psp6I	CCWGG	4 cut(s)	578, 1780, 2077, 2144
PspFI	CCCAGC	3 cut(s)	890, 961, 1682
PspGI	CCWGG	4 cut(s)	578, 1780, 2077, 2144
PspLI	CGTACG	1 cut(s)	1360
PspN4I	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1290, 1378, 2150
PspPI	GGNCC	1 cut(s)	774
PspPPI	RGGWCCY	1 cut(s)	774
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1081
PvuII	CAGCTG	3 cut(s)	160, 884, 1931
RsaI	GTAC	7 cut(s)	646, 796, 1065, 1362, 1716, 2119, 2150
RsaNI	GTAC	7 cut(s)	645, 795, 1064, 1361, 1715, 2118, 2149
RseI	CAYNNNNRTG	4 cut(s)	861, 1035, 1164, 2046
SacI	GAGCTC	1 cut(s)	1030
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	1408
SatI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1468, 1836, 1889, 2039
Sau96I	GGNCC	1 cut(s)	774
ScaI	AGTACT	2 cut(s)	646, 796
SchI	GAGTC	5 cut(s)	71, 446, 622, 705, 1591
ScrFI	CCNGG	6 cut(s)	135, 212, 580, 1782, 2079, 2146
SduI	GDGCHC	4 cut(s)	1030, 1114, 1159, 2097
SexAI	ACCWGGT	1 cut(s)	1780
SfaNI	GCATC	4 cut(s)	535, 610, 661, 1928
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	774
SmiMI	CAYNNNNRTG	4 cut(s)	861, 1035, 1164, 2046
SphI	GCATGC	1 cut(s)	1739
SseBI	AGGCCT	1 cut(s)	1413
SsiI	CCGC	6 cut(s)	90, 97, 491, 729, 771, 1244
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	8 cut(s)	59, 255, 675, 951, 969, 1415, 1730, 2115
SstI	GAGCTC	1 cut(s)	1030
StuI	AGGCCT	1 cut(s)	1413
StyD4I	CCNGG	6 cut(s)	133, 210, 578, 1780, 2077, 2144
TaaI	ACNGT	6 cut(s)	155, 310, 536, 706, 794, 821
TaiI	ACGT	2 cut(s)	870, 1014
TaqI	TCGA	9 cut(s)	6, 30, 72, 114, 261, 1549, 1621, 1643, 2033
TatI	WGTACW	4 cut(s)	644, 794, 1714, 2117
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	166, 317, 446, 1661
TscAI	CASTG	5 cut(s)	158, 421, 436, 1062, 1832
TseFI	GTSAC	3 cut(s)	431, 863, 1924
TseI	GCWGC	8 cut(s)	92, 574, 881, 884, 1467, 1835, 1888, 2038
Tsp45I	GTSAC	3 cut(s)	431, 863, 1924
TspDTI	ATGAA	4 cut(s)	158, 840, 1010, 1888
TspGWI	ACGGA	2 cut(s)	16, 100
TspRI	CASTG	5 cut(s)	158, 421, 436, 1062, 1832
Van91I	CCANNNNNTGG	1 cut(s)	2167
VpaK11BI	GGWCC	1 cut(s)	774
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	2 cut(s)	528, 2072
XceI	RCATGY	1 cut(s)	1739
XmiI	GTMKAC	2 cut(s)	72, 561
XspI	CTAG	8 cut(s)	59, 255, 675, 951, 969, 1415, 1730, 2115
ZrmI	AGTACT	2 cut(s)	646, 796
Zsp2I	ATGCAT	2 cut(s)	1921, 1999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.