Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009337

Physical Location & Seq

Genomic Coordinates Reverse (-)

66593814 .. 66599979

Gene Structure 6166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG488600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGCTCGAAGTCTATAGGAACAGCTCCGTCGATTGGAAGCCGTCGCCGGTCGTTGCCCTAGCCACCAGCGTCGACGACTCGCAGGTCGCCGCCGCCCGCGCCGACGGCTCCGTCGAGATTTGGCTCGTCTCCCCCGGCGCCGTCGGATGGCACTGTCAGCTGACGATTCATGGAGACCCTAACACGAGCGTTTCGTCGCTCATTTGGTGCCGGGCTGGCTCGAAAGGCTTGCCTTGTGGGCGGTTGTTCTCTTCTAGCCTCGACGGCTCAGTTTCGCATTGGGATCTTTTTAATTTGAAGCAGACGACTGTTTTGGATTCTGTGGGGGTCTCAATCTTTAATATGGCCGTGGCACCCTGTGTTAATGATACAGAGAATGGGTTTTTGAATGATAATGGGGGTGATCCTGAAACCAGTGATAGTGAAACCAGTGACAGCGAGGATGATTCAGACTCAGACGATGATCATGCACCATCAGTTCTTGTGAACCCGCGCGTGGCATTAGCTGGTGGTGATGGTTTTCTGCAAATTTACAGTATTAATGATGCAGATGAGTTTGTATACACTAAATCGCTGCCTAGGGTCAATGGTAGTGTTTTGAGTGTGGCGTGGAGTCCCGATGCAAAGTTTATATATGCAGGGAGTACTGATGGCATGATAAGGATCTGGGATGCTAGAGGAGGCATTGAAAAACATAGGATTACAGTTGGACTCGGAGGCTTGGGTAGCGGATCTGAACTCTGTGTGTGGGCGTTACTTTCTCTGAGGTGCGGGACCCTTGTAAGTGCAGACAGTACTGGAAGTGTTCAGTTTTGGGACAGTCAGCATGGAACTCTACTGCAAGCACATTCATATCACAAGGGTGACGTGAAAGCTCTGGCAGCTGCTCCCAGCCATAATCGGGTGTTCTCTGCTGGTTCTGATGGTCAGGTTATTCTTTACAAGCTCTCTAGTGAGACGCTGGGATCTAGTGTTGGGTCTTCTCCTAATGTAATGAAGAAATGGATCTACGTTGGTTATACAAGAGCTCATACACATGATGTTAGGGCTTTGGCAGTGGCTGTACCAATCAGCAGAGAAGCAGATCCCTTACCAGATCAAGGTAGAAAAAGAGCCCGTCGTAAGGACAAGCCTGTTGATTTTGGTTATCTTAAATGGGCACATTTGGGTGTTCCTATGCTTATCTCTGCTGGTGATGACACAAAGCTCTTTACCTACCCTGTTAAGGAGTTCACGCAGTTTTCTCCACATGATATCTGCCCTGCACCTCAGAGAGTATCCATTCAACTGGCACCTAATACAGAGTTCAGTCAAACATCATTGCTTCTTGTTCAAGGTTCTCATTCGTTGGATATCTTGCACGTACGAGTAAAAGCTGGTGCCTTTTTTGATATGGCTCGTGGCTCTTCAGGAGGCCTAGCCTCAACTAATGGGCTGTTTCAAATTAAGTCATCTCGGAAGATCATTTGCAGCACCATATCTAATTCAGGGGTGTTTTTTGCTTATTCTGACCATGTGAAAATTAGCCTGTTTGAGTTGAAGAAGTGTATTCGATCAGGAAAAAAAGAAGTGAAGTGTAAAGTTGGCGAAAGTGAATTGACTCTTAATAAAAGAGAACTTCCTCGAAAACTACCATTTGCTCATTCGATGGTTTTTAGTTTTGATTCTTCTCGCTTGATGATAGCAGGGCATGATAGAAGAATATATGTTGTGGATGTACACAGCTCAGAGCTAGTGCATGCTTTTTCCCCTTGCCGTGATTTGCATGATCAAGAACTACCACCTGGTGAGCCTCCCATAACAAAAATGTTTACGAGTTCTGATGGGCAGTGGTTGGCTGCCATCAACTGCTTTGGAGATGTATATGTATTTAATCTGGAGATACAGAGGCAGCATTGGTTCATTTCAAGACTGGATAATGCCTCTGTGACAGCTGGAGGTTTTTCTCCAAGAAACAATAATGTTCTTATAATCACGACCTCTTCAAATCAGGTATATGCATTGGATGTTGAGGAGAGAAAATTGGGAGACTGGTCGAAGCAGCACACTTATGTTCTTCCCAAGAGATTTCAAGAATTTCCAGGCGAAGTTATTGGGCTCTCTTTCCCACCTTCTCCTAGTACAACATCTGTTATTGTCTATAGTGCCAGGTACCTCCCTGTCCATAATTTGGAATTATGTTATATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010015 GO:0010051 GO:0010073 GO:0010101 GO:0010102 GO:0010154 GO:0010305 GO:0010311 GO:0010449 GO:0010817 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051049 GO:0061458 GO:0065007 GO:0065008 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

WD40

Protein Analysis

730

Amino Acids

79.68

Weight (kDa)

6.25

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	17 - 231	3.7e-12	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	166 - 320	4.3e-12	WDR5 beta-propeller domain
WDR55	PF24796	166 - 321	1e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	182 - 317	1.2e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	191 - 352	2e-10	CDC20/Fizzy WD40 domain
WD40	PF00400	197 - 224	1.3e-07	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	262 - 321	4.2e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27470 AT4G07410 AT4G07410
fragaria_vesca	FvH4_2g32880 FvH4_2g32880 FvH4_2g32880 FvH4_2g32880
malus_domestica	MD08G1080300.v1.1 MD15G1067400.v1.1
prunus_persica	Prupe.1G421300_v2.0.a1
pyrus_communis	pycom08g06630 pycom15g06390
rosa_chinensis	RchiOBHm_Chr6g0309831
rosa_laevigata	RLG00000010532
rosa_multiflora	Rmu_ssc0000373.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159140
rosa_rugosa	Rorug06G0375100
rosa_samantha	Rh6AG488600 Rh6BG498100 Rh6CG502900 Rh6DG489000
rosa_wichuraiana	Rw6G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1970
AasI	GACNNNNNNGTC	2 cut(s)	83, 110
Acc36I	ACCTGC	1 cut(s)	73
Acc65I	GGTACC	1 cut(s)	2151
AccB1I	GGYRCC	6 cut(s)	137, 207, 352, 1291, 1379, 2151
AccB7I	CCANNNNNTGG	1 cut(s)	2170
AccI	GTMKAC	2 cut(s)	72, 561
AccII	CGCG	3 cut(s)	99, 493, 495
AciI	CCGC	7 cut(s)	90, 93, 97, 241, 491, 729, 771
AclWI	GGATC	7 cut(s)	291, 398, 671, 739, 973, 1013, 1079
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	528, 2075
AcuI	CTGAAG	1 cut(s)	1392
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	2 cut(s)	359, 1787
AfaI	GTAC	7 cut(s)	646, 796, 1065, 1365, 1719, 2122, 2153
AfiI	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1100, 1123, 1225, 2170
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	1783, 2080, 2147
AleI	CACNNNNGTG	1 cut(s)	861
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	5 cut(s)	133, 168, 334, 950, 2022
AlwI	GGATC	7 cut(s)	291, 398, 671, 739, 973, 1013, 1079
AlwNI	CAGNNNCTG	1 cut(s)	1061
AoxI	GGCC	2 cut(s)	345, 1414
ApeKI	GCWGC	7 cut(s)	574, 881, 884, 1470, 1838, 1891, 2041
ApoI	RAATTY	2 cut(s)	528, 2075
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AseI	ATTAAT	1 cut(s)	540
Asp718I	GGTACC	1 cut(s)	2151
AspA2I	CCTAGG	1 cut(s)	578
AspLEI	GCGC	3 cut(s)	101, 140, 495
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	2 cut(s)	135, 212
AsuHPI	GGTGA	5 cut(s)	413, 524, 875, 1205, 1799
AvaII	GGWCC	1 cut(s)	774
AvrII	CCTAGG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	1162
BanI	GGYRCC	6 cut(s)	137, 207, 352, 1291, 1379, 2151
BanII	GRGCYC	3 cut(s)	1030, 1117, 2100
BauI	CACGAG	2 cut(s)	184, 1398
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	1030
BbvI	GCAGC	7 cut(s)	561, 871, 893, 1482, 1825, 1903, 2053
BccI	CCATC	8 cut(s)	141, 481, 509, 644, 917, 1642, 1817, 1850
BceAI	ACGGC	6 cut(s)	25, 121, 125, 280, 332, 1740
BcgI	CGANNNNNNTGC	4 cut(s)	211, 245, 449, 483
BciT130I	CCWGG	3 cut(s)	1785, 2082, 2149
BciVI	GTATCC	1 cut(s)	1288
BclI	TGATCA	2 cut(s)	463, 1768
BcnI	CCSGG	2 cut(s)	135, 212
BcoDI	GTCTC	5 cut(s)	133, 168, 334, 950, 2022
BfaI	CTAG	9 cut(s)	59, 255, 579, 675, 951, 969, 1418, 1733, 2118
BfmI	CTRYAG	2 cut(s)	13, 2140
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	1288
BglI	GCCNNNNNGGC	3 cut(s)	216, 238, 264
BisI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1471, 1839, 1892, 2042
BlnI	CCTAGG	1 cut(s)	578
BlsI	GCNGC	9 cut(s)	91, 94, 576, 883, 886, 1472, 1840, 1893, 2043
BmcAI	AGTACT	2 cut(s)	646, 796
Bme1390I	CCNGG	5 cut(s)	135, 212, 1785, 2082, 2149
Bme18I	GGWCC	1 cut(s)	774
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1293, 1381, 2153
BmrFI	CCNGG	5 cut(s)	135, 212, 1785, 2082, 2149
BmsI	GCATC	3 cut(s)	535, 610, 661
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	2 cut(s)	1898, 1956
BpuMI	CCSGG	2 cut(s)	135, 212
BsaAI	YACGTR	1 cut(s)	1363
BsaBI	GATNNNNATC	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	2 cut(s)	168, 334
BsaJI	CCNNGG	3 cut(s)	133, 348, 578
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1100, 1123, 1225, 2170
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	6 cut(s)	414, 429, 802, 1293, 1917, 2036
Bse3DI	GCAATG	1 cut(s)	1319
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	3 cut(s)	1785, 2082, 2149
BseDI	CCNNGG	3 cut(s)	133, 348, 578
BseGI	GGATG	5 cut(s)	152, 448, 676, 1720, 2011
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1100, 1123, 1225, 2170
BseMI	GCAATG	1 cut(s)	1319
BseMII	CTCAG	5 cut(s)	282, 468, 755, 1283, 1740
BseNI	ACTGG	6 cut(s)	414, 429, 802, 1293, 1917, 2036
BseRI	GAGGAG	2 cut(s)	693, 2027
BseSI	GKGCMC	1 cut(s)	1162
BseXI	GCAGC	7 cut(s)	561, 871, 893, 1482, 1825, 1903, 2053
BseYI	CCCAGC	2 cut(s)	890, 961
BsgI	GTGCAG	2 cut(s)	807, 1248
Bsh1236I	CGCG	3 cut(s)	99, 493, 495
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	347, 1416
BshNI	GGYRCC	6 cut(s)	137, 207, 352, 1291, 1379, 2151
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiSI	CCGG	3 cut(s)	47, 135, 211
BsiWI	CGTACG	1 cut(s)	1363
BslFI	GGGAC	3 cut(s)	600, 787, 830
BslI	CCNNNNNNNGG	8 cut(s)	33, 147, 496, 901, 1100, 1123, 1225, 2170
BsmAI	GTCTC	5 cut(s)	133, 168, 334, 950, 2022
BsmBI	CGTCTC	2 cut(s)	133, 950
BsmFI	GGGAC	3 cut(s)	600, 787, 830
BsnI	GGCC	2 cut(s)	347, 1416
Bso31I	GGTCTC	2 cut(s)	168, 334
Bsp1286I	GDGCHC	4 cut(s)	1030, 1117, 1162, 2100
Bsp1407I	TGTACA	1 cut(s)	1717
BspACI	CCGC	7 cut(s)	90, 93, 97, 241, 491, 729, 771
BspANI	GGCC	2 cut(s)	347, 1416
BspCNI	CTCAG	5 cut(s)	281, 467, 756, 1282, 1739
BspFNI	CGCG	3 cut(s)	99, 493, 495
BspLI	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1293, 1381, 2153
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	7 cut(s)	291, 398, 671, 739, 973, 1013, 1079
BspQI	GCTCTTC	1 cut(s)	1411
BspT107I	GGYRCC	6 cut(s)	137, 207, 352, 1291, 1379, 2151
BspTNI	GGTCTC	2 cut(s)	168, 334
BsrDI	GCAATG	1 cut(s)	1319
BsrFI	RCCGGY	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	1717
BsrI	ACTGG	6 cut(s)	414, 429, 802, 1293, 1917, 2036
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	133, 348, 578
BssNAI	GTATAC	1 cut(s)	562
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	2 cut(s)	184, 1398
BssT1I	CCWWGG	1 cut(s)	578
Bst1107I	GTATAC	1 cut(s)	562
Bst2BI	CACGAG	2 cut(s)	184, 1398
Bst2UI	CCWGG	3 cut(s)	1785, 2082, 2149
Bst4CI	ACNGT	6 cut(s)	155, 310, 536, 706, 794, 821
Bst6I	CTCTTC	3 cut(s)	256, 1411, 1987
BstACI	GRCGYC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	1717
BstBAI	YACGTR	1 cut(s)	1363
BstC8I	GCNNGC	5 cut(s)	97, 217, 230, 843, 1740
BstDEI	CTNAG	6 cut(s)	268, 454, 764, 1269, 1726, 2190
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	5 cut(s)	152, 448, 676, 1720, 2011
BstFNI	CGCG	3 cut(s)	99, 493, 495
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	101, 140, 495
BstMAI	GTCTC	5 cut(s)	133, 168, 334, 950, 2022
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 105, 157, 216, 225, 238, 264, 726, 881
BstNI	CCWGG	3 cut(s)	1785, 2082, 2149
BstNSI	RCATGY	1 cut(s)	1742
BstSCI	CCNGG	5 cut(s)	133, 210, 1783, 2080, 2147
BstSFI	CTRYAG	2 cut(s)	13, 2140
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	3 cut(s)	99, 493, 495
BstV1I	GCAGC	7 cut(s)	561, 871, 893, 1482, 1825, 1903, 2053
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BstYI	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1084
BstZ17I	GTATAC	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	1288
BsuRI	GGCC	2 cut(s)	347, 1416
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	5 cut(s)	152, 448, 676, 1720, 2011
BtsI	GCAGTG	2 cut(s)	1062, 1835
BtsIMutI	CAGTG	5 cut(s)	151, 421, 436, 1062, 1835
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	5 cut(s)	97, 217, 230, 843, 1740
CaiI	CAGNNNCTG	1 cut(s)	1061
CfoI	GCGC	3 cut(s)	101, 140, 495
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	774
CseI	GACGC	2 cut(s)	58, 967
CsiI	ACCWGGT	1 cut(s)	1783
Csp6I	GTAC	7 cut(s)	645, 795, 1064, 1364, 1718, 2121, 2152
CviQI	GTAC	7 cut(s)	645, 795, 1064, 1364, 1718, 2121, 2152
DdeI	CTNAG	6 cut(s)	268, 454, 764, 1269, 1726, 2190
DinI	GGCGCC	1 cut(s)	139
DraIII	CACNNNGTG	2 cut(s)	359, 1787
DrdI	GACNNNNNNGTC	2 cut(s)	83, 110
DseDI	GACNNNNNNGTC	2 cut(s)	83, 110
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	256, 1411, 1987
EarI	CTCTTC	3 cut(s)	256, 1411, 1987
Ecl136II	GAGCTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	578
Eco147I	AGGCCT	1 cut(s)	1416
Eco24I	GRGCYC	3 cut(s)	1030, 1117, 2100
Eco31I	GGTCTC	2 cut(s)	168, 334
Eco32I	GATATC	2 cut(s)	1255, 1354
Eco47I	GGWCC	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	1028
Eco57I	CTGAAG	1 cut(s)	1392
EcoICRI	GAGCTC	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	3 cut(s)	1783, 2080, 2147
EcoRV	GATATC	2 cut(s)	1255, 1354
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	2002
EcoT38I	GRGCYC	3 cut(s)	1030, 1117, 2100
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	2 cut(s)	133, 950
FaqI	GGGAC	3 cut(s)	600, 787, 830
FauI	CCCGC	3 cut(s)	104, 498, 764
FbaI	TGATCA	2 cut(s)	463, 1768
FblI	GTMKAC	2 cut(s)	72, 561
Fnu4HI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1471, 1839, 1892, 2042
FokI	GGATG	5 cut(s)	159, 455, 683, 1727, 2018
FriOI	GRGCYC	3 cut(s)	1030, 1117, 2100
Fsp4HI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1471, 1839, 1892, 2042
FspBI	CTAG	9 cut(s)	59, 255, 579, 675, 951, 969, 1418, 1733, 2118
GlaI	GCGC	3 cut(s)	100, 139, 494
GluI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1471, 1839, 1892, 2042
GsaI	CCCAGC	2 cut(s)	894, 965
GsuI	CTGGAG	2 cut(s)	1898, 1956
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	347, 1416
HapII	CCGG	3 cut(s)	47, 135, 211
HgaI	GACGC	2 cut(s)	58, 967
HhaI	GCGC	3 cut(s)	101, 140, 495
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	3 cut(s)	99, 138, 493
HinP1I	GCGC	3 cut(s)	99, 138, 493
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	9 cut(s)	77, 166, 317, 446, 452, 613, 711, 1600, 1664
HpaII	CCGG	3 cut(s)	47, 135, 211
HphI	GGTGA	5 cut(s)	413, 524, 875, 1205, 1799
Hpy166II	GTNNAC	6 cut(s)	73, 487, 562, 1233, 1720, 1812
Hpy8I	GTNNAC	6 cut(s)	73, 487, 562, 1233, 1720, 1812
HpyAV	CCTTC	1 cut(s)	2121
HpyCH4III	ACNGT	6 cut(s)	155, 310, 536, 706, 794, 821
HpyCH4IV	ACGT	3 cut(s)	867, 1011, 1362
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 105, 157, 216, 225, 238, 264, 726, 881
HpyF3I	CTNAG	6 cut(s)	268, 454, 764, 1269, 1726, 2190
HpySE526I	ACGT	3 cut(s)	867, 1011, 1362
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	3 cut(s)	99, 138, 493
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	774
KpnI	GGTACC	1 cut(s)	2155
Ksp22I	TGATCA	2 cut(s)	463, 1768
LguI	GCTCTTC	1 cut(s)	1411
LmnI	GCTCC	3 cut(s)	29, 113, 892
Lsp1109I	GCAGC	7 cut(s)	561, 871, 893, 1482, 1825, 1903, 2053
LweI	GCATC	3 cut(s)	535, 610, 661
MabI	ACCWGGT	1 cut(s)	1783
MaeI	CTAG	9 cut(s)	59, 255, 579, 675, 951, 969, 1418, 1733, 2118
MaeII	ACGT	3 cut(s)	867, 1011, 1362
MaeIII	GTNAC	4 cut(s)	431, 753, 863, 1927
MflI	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1084
MhlI	GDGCHC	4 cut(s)	1030, 1117, 1162, 2100
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	5 cut(s)	71, 446, 622, 705, 1594
MmeI	TCCRAC	3 cut(s)	124, 688, 1329
Mph1103I	ATGCAT	1 cut(s)	2002
MseI	TTAA	9 cut(s)	291, 339, 363, 540, 1152, 1224, 1446, 1605, 1872
MslI	CAYNNNNRTG	4 cut(s)	861, 1035, 1167, 2049
MspA1I	CMGCKG	3 cut(s)	160, 884, 1934
MspI	CCGG	3 cut(s)	47, 135, 211
MspR9I	CCNGG	5 cut(s)	135, 212, 1785, 2082, 2149
MvaI	CCWGG	3 cut(s)	1785, 2082, 2149
MvnI	CGCG	3 cut(s)	99, 493, 495
MwoI	GCNNNNNNNGC	9 cut(s)	98, 105, 157, 216, 225, 238, 264, 726, 881
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	135, 212
NlaIV	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1293, 1381, 2153
NmuCI	GTSAC	3 cut(s)	431, 863, 1927
NsiI	ATGCAT	1 cut(s)	2002
NspI	RCATGY	1 cut(s)	1742
OliI	CACNNNNGTG	1 cut(s)	861
PaeI	GCATGC	1 cut(s)	1742
PceI	AGGCCT	1 cut(s)	1416
PciSI	GCTCTTC	1 cut(s)	1411
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 191
PfeI	GAWTC	4 cut(s)	166, 317, 446, 1664
Pfl23II	CGTACG	1 cut(s)	1363
PflMI	CCANNNNNTGG	1 cut(s)	2170
PkrI	GCNGC	9 cut(s)	91, 94, 576, 883, 886, 1472, 1840, 1893, 2043
PleI	GAGTC	5 cut(s)	71, 446, 621, 705, 1594
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	5 cut(s)	71, 446, 621, 705, 1594
Ppu21I	YACGTR	1 cut(s)	1363
PpuMI	RGGWCCY	1 cut(s)	774
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	1970
Psp124BI	GAGCTC	1 cut(s)	1030
Psp5II	RGGWCCY	1 cut(s)	774
Psp6I	CCWGG	3 cut(s)	1783, 2080, 2147
PspFI	CCCAGC	2 cut(s)	890, 961
PspGI	CCWGG	3 cut(s)	1783, 2080, 2147
PspLI	CGTACG	1 cut(s)	1363
PspN4I	GGNNCC	9 cut(s)	109, 139, 209, 354, 775, 776, 1293, 1381, 2153
PspPI	GGNCC	1 cut(s)	774
PspPPI	RGGWCCY	1 cut(s)	774
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	6 cut(s)	283, 663, 731, 965, 1005, 1084
PvuII	CAGCTG	3 cut(s)	160, 884, 1934
RsaI	GTAC	7 cut(s)	646, 796, 1065, 1365, 1719, 2122, 2153
RsaNI	GTAC	7 cut(s)	645, 795, 1064, 1364, 1718, 2121, 2152
RseI	CAYNNNNRTG	4 cut(s)	861, 1035, 1167, 2049
SacI	GAGCTC	1 cut(s)	1030
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	1411
SaqAI	TTAA	9 cut(s)	291, 339, 363, 540, 1152, 1224, 1446, 1605, 1872
SatI	GCNGC	9 cut(s)	90, 93, 575, 882, 885, 1471, 1839, 1892, 2042
Sau96I	GGNCC	1 cut(s)	774
ScaI	AGTACT	2 cut(s)	646, 796
SchI	GAGTC	5 cut(s)	71, 446, 622, 705, 1594
ScrFI	CCNGG	5 cut(s)	135, 212, 1785, 2082, 2149
SduI	GDGCHC	4 cut(s)	1030, 1117, 1162, 2100
SexAI	ACCWGGT	1 cut(s)	1783
SfaNI	GCATC	3 cut(s)	535, 610, 661
SfcI	CTRYAG	2 cut(s)	13, 2140
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	774
SmiMI	CAYNNNNRTG	4 cut(s)	861, 1035, 1167, 2049
SphI	GCATGC	1 cut(s)	1742
SseBI	AGGCCT	1 cut(s)	1416
SsiI	CCGC	7 cut(s)	90, 93, 97, 241, 491, 729, 771
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	9 cut(s)	59, 255, 579, 675, 951, 969, 1418, 1733, 2118
SstI	GAGCTC	1 cut(s)	1030
StuI	AGGCCT	1 cut(s)	1416
StyD4I	CCNGG	5 cut(s)	133, 210, 1783, 2080, 2147
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	6 cut(s)	155, 310, 536, 706, 794, 821
TaiI	ACGT	3 cut(s)	870, 1014, 1365
TatI	WGTACW	4 cut(s)	644, 794, 1717, 2120
TauI	GCSGC	2 cut(s)	92, 95
TfiI	GAWTC	4 cut(s)	166, 317, 446, 1664
Tru1I	TTAA	9 cut(s)	291, 339, 363, 540, 1152, 1224, 1446, 1605, 1872
Tru9I	TTAA	9 cut(s)	291, 339, 363, 540, 1152, 1224, 1446, 1605, 1872
TscAI	CASTG	5 cut(s)	158, 421, 436, 1062, 1835
TseFI	GTSAC	3 cut(s)	431, 863, 1927
TseI	GCWGC	7 cut(s)	574, 881, 884, 1470, 1838, 1891, 2041
Tsp45I	GTSAC	3 cut(s)	431, 863, 1927
TspDTI	ATGAA	4 cut(s)	158, 840, 1010, 1891
TspGWI	ACGGA	2 cut(s)	16, 100
TspRI	CASTG	5 cut(s)	158, 421, 436, 1062, 1835
Van91I	CCANNNNNTGG	1 cut(s)	2170
VpaK11BI	GGWCC	1 cut(s)	774
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	2 cut(s)	528, 2075
XceI	RCATGY	1 cut(s)	1742
XmaJI	CCTAGG	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	72, 561
XspI	CTAG	9 cut(s)	59, 255, 579, 675, 951, 969, 1418, 1733, 2118
ZrmI	AGTACT	2 cut(s)	646, 796
Zsp2I	ATGCAT	1 cut(s)	2002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.