Rmu_ssc0000485.1_g000001

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000485.1
OG0013907
Physical Location & Seq
Reverse (-)
670 .. 1879
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
atggagaagcaccaatgcaagctctgcgctaggattttcaacaatggcagagcattgggtggtcacatgaaggctcacatggccgtccttcctctccctccaaagacccaccaacaactcgctgctgctgagtctactcactctgcctcgtcctcctcttcgtcttctgaagatgaacagcaaaagggtagtcatcaacaagaggaggaagatcagaaggctttggcttatgtgttgagggagaatcccaagaaaagtttcagacttgcagatcctgagttctcttttcaggttgatgctgggtctgtagttattcaagacagggagagcgagaccgagtcgagaaacccaactcggagacgatccaagcggaatcggaggatgagttttacagagaaattggagctgaagaaacccaagttgacaacttcaacggttgactcgccgccggccgagccggagccgttgagctcagtctccgacacttcaccggaagaggatgttgccatgtgcctcatgttgctgtcgagggatgtgtggatgagaacaaactgtggagaagcagatcaagaacaaaatgggaaagaggagttcgagcaattggaggagatcaaattgaagaaagtgagaggcaagaatcggtgtgacaaatgcagtaagctctttcgatctcatcaagcaatgtgcgtgcacagaaagatttgctttcgaagcgaagcagaggccaacaatgcagctagcagtgccagtctgttcaagtgcccattctgcagcaagatttttgggtccggacaagctcttgggggtcacaaaaggtctcatctttctggcactgcgggttactcgagagtcgtcacaaaagttacagaagttcgggagagtttcatagatctcaacatgcctgctccacaagaagaagataatttcagtgttgtttccgatgcttag

Protein Analysis

315

Amino Acids

35.21

Weight (kDa)

8.01

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 252 - 275 2.1e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16610
fragaria_vesca FvH4_5g19030
malus_domestica MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica Prupe.5G068600_v2.0.a1
pyrus_communis pycom04g05740 pycom06g04850
rosa_chinensis RchiOBHm_Chr7g0203441
rosa_laevigata RLG00000003528
rosa_multiflora Rmu_ssc0000485.1_g000001
rosa_roxburghii Rroxscaffold_3G00253810
rosa_rugosa Rorug07G0076000
rosa_samantha Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana Rw7G017960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 788
AciI CCGC 3 cut(s) 370, 446, 836
AclWI GGATC 2 cut(s) 266, 357
AcoI YGGCCR 2 cut(s) 81, 450
AcuI CTGAAG 2 cut(s) 189, 428
AgsI TTSAA 5 cut(s) 40, 317, 432, 619, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 6 cut(s) 22, 406, 471, 661, 737, 797
AluI AGCT 6 cut(s) 22, 406, 471, 661, 737, 797
Alw21I GWGCWC 2 cut(s) 473, 693
Alw26I GTCTC 4 cut(s) 326, 352, 481, 822
Alw44I GTGCAC 1 cut(s) 689
AlwI GGATC 2 cut(s) 266, 357
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 844
Aor13HI TCCGGA 1 cut(s) 788
AoxI GGCC 3 cut(s) 81, 450, 723
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 4 cut(s) 122, 125, 734, 771
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 786
AsuHPI GGTGA 1 cut(s) 480
AsuII TTCGAA 1 cut(s) 709
AsuNHI GCTAGC 1 cut(s) 737
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 1 cut(s) 786
BaeGI GKGCMC 2 cut(s) 693, 764
BanII GRGCYC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 473, 693
BbvI GCAGC 4 cut(s) 109, 112, 746, 783
BceAI ACGGC 2 cut(s) 68, 448
BcoDI GTCTC 4 cut(s) 326, 352, 481, 822
BfaI CTAG 2 cut(s) 30, 738
BfmI CTRYAG 2 cut(s) 306, 769
BglII AGATCT 1 cut(s) 889
BisI GCNGC 5 cut(s) 123, 126, 446, 735, 772
BlsI GCNGC 5 cut(s) 124, 127, 447, 736, 773
Bme18I GGWCC 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 786
BmiI GGNNCC 2 cut(s) 462, 787
BmsI GCATC 2 cut(s) 286, 931
BmtI GCTAGC 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 709
BsaI GGTCTC 2 cut(s) 326, 822
BsaWI WCCGGW 2 cut(s) 490, 788
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 687
BseAI TCCGGA 1 cut(s) 788
BseGI GGATG 4 cut(s) 387, 505, 538, 546
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 3 cut(s) 120, 267, 486
BseNI ACTGG 1 cut(s) 747
BseRI GAGGAG 4 cut(s) 145, 218, 602, 620
BseSI GKGCMC 2 cut(s) 693, 764
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 4 cut(s) 109, 112, 746, 783
BseYI CCCAGC 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 3 cut(s) 83, 452, 725
BsiEI CGRYCG 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 473, 693
BsiHKCI CYCGRG 1 cut(s) 844
BsiSI CCGG 4 cut(s) 449, 458, 491, 789
BsmAI GTCTC 4 cut(s) 326, 352, 481, 822
BsmBI CGTCTC 1 cut(s) 352
BsnI GGCC 3 cut(s) 83, 452, 725
Bso31I GGTCTC 2 cut(s) 326, 822
BsoBI CYCGRG 1 cut(s) 844
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 3 cut(s) 473, 693, 764
Bsp13I TCCGGA 1 cut(s) 788
Bsp143I GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
BspACI CCGC 3 cut(s) 370, 446, 836
BspANI GGCC 3 cut(s) 83, 452, 725
BspCNI CTCAG 3 cut(s) 121, 268, 485
BspEI TCCGGA 1 cut(s) 788
BspLI GGNNCC 2 cut(s) 462, 787
BspMAI CTGCAG 1 cut(s) 773
BspOI GCTAGC 1 cut(s) 741
BspPI GGATC 2 cut(s) 266, 357
BspT104I TTCGAA 1 cut(s) 709
BspTNI GGTCTC 2 cut(s) 326, 822
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 1 cut(s) 448
BssMI GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
Bst4CI ACNGT 2 cut(s) 436, 554
Bst6I CTCTTC 2 cut(s) 163, 489
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 5 cut(s) 20, 450, 689, 739, 903
BstDEI CTNAG 4 cut(s) 129, 276, 472, 945
BstF5I GGATG 4 cut(s) 387, 505, 538, 546
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 7 cut(s) 214, 274, 365, 568, 612, 671, 892
BstMAI GTCTC 4 cut(s) 326, 352, 481, 822
BstMBI GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 711, 731, 743, 768
BstNSI RCATGY 1 cut(s) 901
BstSFI CTRYAG 2 cut(s) 306, 769
BstSLI GKGCMC 2 cut(s) 693, 764
BstV1I GCAGC 4 cut(s) 109, 112, 746, 783
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 271, 889
BstYI RGATCY 2 cut(s) 271, 889
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 3 cut(s) 83, 452, 725
BtsCI GGATG 4 cut(s) 387, 505, 538, 546
BtsI GCAGTG 2 cut(s) 748, 831
BtsIMutI CAGTG 3 cut(s) 748, 831, 934
Cac8I GCNNGC 5 cut(s) 20, 450, 689, 739, 903
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 786
CviAII CATG 5 cut(s) 67, 79, 508, 517, 898
DdeI CTNAG 4 cut(s) 129, 276, 472, 945
DpnI GATC 7 cut(s) 213, 273, 364, 567, 611, 670, 891
DpnII GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
EaeI YGGCCR 2 cut(s) 81, 450
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 163, 489
EarI CTCTTC 2 cut(s) 163, 489
Ecl136II GAGCTC 1 cut(s) 471
EclXI CGGCCG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 473
Eco31I GGTCTC 2 cut(s) 326, 822
Eco47I GGWCC 1 cut(s) 786
Eco52I CGGCCG 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 2 cut(s) 189, 428
Eco88I CYCGRG 1 cut(s) 844
EcoICRI GAGCTC 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 5 cut(s) 70, 82, 511, 520, 901
FaiI YATR 7 cut(s) 68, 80, 231, 509, 518, 887, 899
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FatI CATG 5 cut(s) 66, 78, 507, 516, 897
FauI CCCGC 1 cut(s) 829
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 5 cut(s) 123, 126, 446, 735, 772
FokI GGATG 4 cut(s) 394, 512, 545, 553
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 5 cut(s) 123, 126, 446, 735, 772
FspBI CTAG 2 cut(s) 30, 738
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 123, 126, 446, 735, 772
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 3 cut(s) 83, 452, 725
HapII CCGG 4 cut(s) 449, 458, 491, 789
HhaI GCGC 1 cut(s) 29
Hin1II CATG 5 cut(s) 70, 82, 511, 520, 901
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 2 cut(s) 423, 439
HindII GTYRAC 2 cut(s) 423, 439
HinfI GANTC 7 cut(s) 131, 244, 338, 373, 440, 637, 849
HpaII CCGG 4 cut(s) 449, 458, 491, 789
HphI GGTGA 1 cut(s) 480
Hpy166II GTNNAC 4 cut(s) 135, 423, 439, 691
Hpy188I TCNGA 7 cut(s) 169, 216, 263, 357, 378, 481, 940
Hpy188III TCNNGA 7 cut(s) 275, 317, 342, 569, 789, 846, 875
Hpy8I GTNNAC 4 cut(s) 135, 423, 439, 691
HpyAV CCTTC 3 cut(s) 64, 98, 211
HpyCH4III ACNGT 2 cut(s) 436, 554
HpyCH4V TGCA 6 cut(s) 18, 269, 654, 691, 734, 771
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 711, 731, 743, 768
HpyF3I CTNAG 4 cut(s) 129, 276, 472, 945
Hsp92II CATG 5 cut(s) 70, 82, 511, 520, 901
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 788
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
Kzo9I GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
LmnI GCTCC 3 cut(s) 403, 460, 910
Lsp1109I GCAGC 4 cut(s) 109, 112, 746, 783
LweI GCATC 2 cut(s) 286, 931
MaeI CTAG 2 cut(s) 30, 738
MaeIII GTNAC 6 cut(s) 62, 644, 806, 839, 853, 862
MalI GATC 7 cut(s) 213, 273, 364, 567, 611, 670, 891
MboI GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
MboII GAAGA 9 cut(s) 150, 156, 182, 221, 421, 506, 631, 926, 929
MfeI CAATTG 1 cut(s) 599
MflI RGATCY 2 cut(s) 271, 889
MhlI GDGCHC 3 cut(s) 473, 693, 764
MluCI AATT 4 cut(s) 398, 599, 614, 922
MlyI GAGTC 4 cut(s) 140, 347, 434, 858
MmeI TCCRAC 1 cut(s) 504
MroI TCCGGA 1 cut(s) 788
MroNI GCCGGC 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 257
MspI CCGG 4 cut(s) 449, 458, 491, 789
MunI CAATTG 1 cut(s) 599
MwoI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 711, 731, 743, 768
NaeI GCCGGC 1 cut(s) 450
NdeII GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
NgoMIV GCCGGC 1 cut(s) 448
NheI GCTAGC 1 cut(s) 737
NlaIII CATG 5 cut(s) 70, 82, 511, 520, 901
NlaIV GGNNCC 2 cut(s) 462, 787
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 4 cut(s) 62, 644, 806, 853
NspI RCATGY 1 cut(s) 901
NspV TTCGAA 1 cut(s) 709
PaeR7I CTCGAG 1 cut(s) 844
PdiI GCCGGC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 244, 373, 637
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 5 cut(s) 124, 127, 447, 736, 773
PleI GAGTC 4 cut(s) 139, 346, 434, 857
PpsI GAGTC 4 cut(s) 139, 346, 434, 857
Psp124BI GAGCTC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 462, 787
PspPI GGNCC 1 cut(s) 786
PstI CTGCAG 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 271, 889
PsyI GACNNNGTC 1 cut(s) 337
SacI GAGCTC 1 cut(s) 473
SatI GCNGC 5 cut(s) 123, 126, 446, 735, 772
Sau3AI GATC 7 cut(s) 211, 271, 362, 565, 609, 668, 889
Sau96I GGNCC 1 cut(s) 786
SchI GAGTC 4 cut(s) 140, 347, 434, 858
SduI GDGCHC 3 cut(s) 473, 693, 764
SetI ASST 8 cut(s) 24, 294, 408, 473, 663, 739, 799, 818
SfaNI GCATC 2 cut(s) 286, 931
SfcI CTRYAG 2 cut(s) 306, 769
Sfr274I CTCGAG 1 cut(s) 844
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 1 cut(s) 786
SlaI CTCGAG 1 cut(s) 844
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 4 cut(s) 398, 599, 614, 922
SsiI CCGC 3 cut(s) 370, 446, 836
SspMI CTAG 2 cut(s) 30, 738
SstI GAGCTC 1 cut(s) 473
TaaI ACNGT 2 cut(s) 436, 554
TaqI TCGA 6 cut(s) 341, 527, 594, 667, 709, 845
TaqII GACCGA 1 cut(s) 350
TasI AATT 4 cut(s) 398, 599, 614, 922
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 3 cut(s) 244, 373, 637
TscAI CASTG 3 cut(s) 748, 838, 934
TseFI GTSAC 4 cut(s) 62, 644, 806, 853
TseI GCWGC 4 cut(s) 122, 125, 734, 771
Tsp45I GTSAC 4 cut(s) 62, 644, 806, 853
TspDTI ATGAA 3 cut(s) 83, 189, 874
TspRI CASTG 3 cut(s) 748, 838, 934
Tth111I GACNNNGTC 1 cut(s) 337
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 786
XceI RCATGY 1 cut(s) 901
XhoI CTCGAG 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 30, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.