Rroxscaffold_121G00451850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000121
OG0017764
Physical Location & Seq
Forward (+)
3719 .. 4347
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_121G00451850.1

Sequence Viewer

Length: 465 bp
ATGTCGACTCCTTGGTCCGTGTTTCAAGACGGGCCGAATGGGGAGCCCGCAGCCGTTACCGTGAGCACGCAGATGCCGAAGCACGCCGAGACGGCGCATGCCGCCTACCATGATCGCGTCGACGACGTCTCCACGGGCATATCAACAGCCCGGCTTTGGCCGCCGCCGCAATCCGTAACGGTCCACGCCCGAGTCGACCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGCCGACGCGCCTCGTGGTGCGACAGGTCCGGCACAACGGGGCTCTCACCCTCTATGGCGCCCTTCCAGGGGACTTGTTCCCGGTCCGCCTCGAGGACGCTTCTCCGTACTACAATTCGGACGCCTTACGACGCCGCATTCTCAAGCCGGGCTATTCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTAAGTTTCTTTTCCTCCGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.78

Weight (kDa)

8.82

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AatII GACGTC 1 cut(s) 129
AbsI CCTCGAGG 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 3 cut(s) 5, 120, 195
AccII CGCG 2 cut(s) 117, 259
AciI CCGC 9 cut(s) 48, 102, 161, 164, 167, 215, 337, 385, 456
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 208
AcyI GRCGYC 4 cut(s) 126, 309, 372, 382
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 5 cut(s) 156, 224, 318, 319, 343
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 83, 133
Ama87I CYCGRG 2 cut(s) 189, 341
AoxI GGCC 2 cut(s) 32, 158
ApeKI GCWGC 2 cut(s) 50, 228
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 3 cut(s) 97, 261, 311
AspS9I GGNCC 5 cut(s) 15, 32, 181, 277, 334
AsuC2I CCSGG 3 cut(s) 151, 332, 399
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 2 cut(s) 189, 341
AvaII GGWCC 4 cut(s) 15, 181, 277, 334
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 48, 295
BauI CACGAG 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 62, 215
BceAI ACGGC 3 cut(s) 38, 108, 404
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 3 cut(s) 151, 332, 399
BcoDI GTCTC 2 cut(s) 83, 133
BfoI RGCGCY 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 7 cut(s) 51, 102, 161, 164, 167, 229, 385
BlsI GCNGC 7 cut(s) 52, 103, 162, 165, 168, 230, 386
Bme1390I CCNGG 4 cut(s) 151, 318, 332, 399
Bme18I GGWCC 4 cut(s) 15, 181, 277, 334
BmeT110I CYCGRG 2 cut(s) 189, 341
BmgT120I GGNCC 5 cut(s) 15, 32, 181, 277, 334
BmiI GGNNCC 2 cut(s) 45, 310
BmrFI CCNGG 4 cut(s) 151, 318, 332, 399
BmsI GCATC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 3 cut(s) 151, 332, 399
BsaHI GRCGYC 4 cut(s) 126, 309, 372, 382
BsaJI CCNNGG 4 cut(s) 11, 132, 199, 317
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 224, 318, 319, 343
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 11, 132, 199, 317
BseLI CCNNNNNNNGG 5 cut(s) 156, 224, 318, 319, 343
BseXI GCAGC 2 cut(s) 62, 215
Bsh1236I CGCG 2 cut(s) 117, 259
BshFI GGCC 2 cut(s) 34, 160
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 2 cut(s) 189, 341
BsiSI CCGG 5 cut(s) 151, 280, 332, 398, 408
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 5 cut(s) 156, 224, 318, 319, 343
BsmAI GTCTC 2 cut(s) 83, 133
BsmBI CGTCTC 2 cut(s) 83, 133
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 2 cut(s) 231, 387
BsnI GGCC 2 cut(s) 34, 160
BsoBI CYCGRG 2 cut(s) 189, 341
Bsp1286I GDGCHC 3 cut(s) 48, 68, 295
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 9 cut(s) 48, 102, 161, 164, 167, 215, 337, 385, 456
BspANI GGCC 2 cut(s) 34, 160
BspFNI CGCG 2 cut(s) 117, 259
BspLI GGNNCC 2 cut(s) 45, 310
BspT107I GGYRCC 1 cut(s) 308
BssECI CCNNGG 4 cut(s) 11, 132, 199, 317
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 4 cut(s) 126, 309, 372, 382
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 11, 199
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 61, 181
BstACI GRCGYC 4 cut(s) 126, 309, 372, 382
BstC8I GCNNGC 5 cut(s) 48, 68, 84, 99, 417
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 2 cut(s) 117, 259
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 3 cut(s) 97, 261, 311
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 83, 133
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 92, 101, 160, 166
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 4 cut(s) 149, 316, 330, 397
BstUI CGCG 2 cut(s) 117, 259
BstV1I GCAGC 2 cut(s) 62, 215
BsuRI GGCC 2 cut(s) 34, 160
BtgI CCRYGG 1 cut(s) 132
Cac8I GCNNGC 5 cut(s) 48, 68, 84, 99, 417
CfoI GCGC 3 cut(s) 97, 261, 311
Cfr13I GGNCC 5 cut(s) 15, 32, 181, 277, 334
CpoI CGGWCCG 1 cut(s) 334
CseI GACGC 5 cut(s) 106, 265, 356, 380, 390
Csp6I GTAC 1 cut(s) 358
CspI CGGWCCG 1 cut(s) 334
CviAII CATG 2 cut(s) 98, 110
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 426
DinI GGCGCC 1 cut(s) 310
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 158
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 11, 199
Eco24I GRGCYC 2 cut(s) 48, 295
Eco47I GGWCC 4 cut(s) 15, 181, 277, 334
Eco88I CYCGRG 2 cut(s) 189, 341
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 11, 199
EcoT38I GRGCYC 2 cut(s) 48, 295
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 11, 199
Esp3I CGTCTC 2 cut(s) 83, 133
FaeI CATG 2 cut(s) 101, 113
FaiI YATR 4 cut(s) 99, 111, 140, 306
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 97, 109
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 3 cut(s) 5, 120, 195
Fnu4HI GCNGC 7 cut(s) 51, 102, 161, 164, 167, 229, 385
FriOI GRGCYC 2 cut(s) 48, 295
Fsp4HI GCNGC 7 cut(s) 51, 102, 161, 164, 167, 229, 385
GlaI GCGC 3 cut(s) 96, 260, 310
GluI GCNGC 7 cut(s) 51, 102, 161, 164, 167, 229, 385
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 2 cut(s) 34, 160
HapII CCGG 5 cut(s) 151, 280, 332, 398, 408
HgaI GACGC 5 cut(s) 106, 265, 356, 380, 390
HhaI GCGC 3 cut(s) 97, 261, 311
Hin1I GRCGYC 4 cut(s) 126, 309, 372, 382
Hin1II CATG 2 cut(s) 101, 113
Hin6I GCGC 3 cut(s) 95, 259, 309
HinP1I GCGC 3 cut(s) 95, 259, 309
HincII GTYRAC 3 cut(s) 6, 121, 196
HindII GTYRAC 3 cut(s) 6, 121, 196
HinfI GANTC 4 cut(s) 7, 192, 248, 432
HpaII CCGG 5 cut(s) 151, 280, 332, 398, 408
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 4 cut(s) 6, 121, 184, 196
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 4 cut(s) 6, 121, 184, 196
Hpy99I CGWCG 5 cut(s) 122, 125, 128, 259, 384
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 61, 181
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 101, 160, 166
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 4 cut(s) 126, 309, 372, 382
Hsp92II CATG 2 cut(s) 101, 113
HspAI GCGC 3 cut(s) 95, 259, 309
KasI GGCGCC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 8 cut(s) 164, 260, 293, 303, 330, 345, 411, 421
Lsp1109I GCAGC 2 cut(s) 62, 215
LweI GCATC 1 cut(s) 63
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 55, 175, 421
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MhlI GDGCHC 3 cut(s) 48, 68, 295
MluCI AATT 2 cut(s) 208, 364
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 201, 242
MnlI CCTC 5 cut(s) 272, 311, 337, 350, 463
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 5 cut(s) 151, 280, 332, 398, 408
MspR9I CCNGG 4 cut(s) 151, 318, 332, 399
Mva1269I GAATGC 2 cut(s) 231, 387
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 2 cut(s) 117, 259
MwoI GCNNNNNNNGC 4 cut(s) 92, 101, 160, 166
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 3 cut(s) 151, 332, 399
NdeII GATC 1 cut(s) 112
NlaIII CATG 2 cut(s) 101, 113
NlaIV GGNNCC 2 cut(s) 45, 310
NmeAIII GCCGAG 1 cut(s) 112
NspI RCATGY 1 cut(s) 101
PaeI GCATGC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 341
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 192
PctI GAATGC 2 cut(s) 231, 387
PfeI GAWTC 1 cut(s) 432
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 7 cut(s) 52, 103, 162, 165, 168, 230, 386
PleI GAGTC 2 cut(s) 200, 242
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 200, 242
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 45, 310
PspPI GGNCC 5 cut(s) 15, 32, 181, 277, 334
PspXI VCTCGAGB 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 71
Rsr2I CGGWCCG 1 cut(s) 334
RsrII CGGWCCG 1 cut(s) 334
SalI GTCGAC 3 cut(s) 4, 119, 194
SatI GCNGC 7 cut(s) 51, 102, 161, 164, 167, 229, 385
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 5 cut(s) 15, 32, 181, 277, 334
SchI GAGTC 2 cut(s) 201, 242
ScrFI CCNGG 4 cut(s) 151, 318, 332, 399
SduI GDGCHC 3 cut(s) 48, 68, 295
SetI ASST 3 cut(s) 129, 201, 279
SfaNI GCATC 1 cut(s) 63
SfoI GGCGCC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 341
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 4 cut(s) 15, 181, 277, 334
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 341, 392
SmoI CTYRAG 2 cut(s) 341, 392
SphI GCATGC 1 cut(s) 101
Sse9I AATT 2 cut(s) 208, 364
SsiI CCGC 9 cut(s) 48, 102, 161, 164, 167, 215, 337, 385, 456
SspDI GGCGCC 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 149, 316, 330, 397
StyI CCWWGG 2 cut(s) 11, 199
TaaI ACNGT 2 cut(s) 61, 181
TaiI ACGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 5, 120, 195, 342
TasI AATT 2 cut(s) 208, 364
TauI GCSGC 5 cut(s) 104, 163, 166, 169, 387
TfiI GAWTC 1 cut(s) 432
TseI GCWGC 2 cut(s) 50, 228
TspGWI ACGGA 4 cut(s) 7, 163, 220, 345
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 4 cut(s) 15, 181, 277, 334
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 341
XmiI GTMKAC 3 cut(s) 5, 120, 195
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.