Rroxscaffold_1G00021320

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
26134401 .. 26138861
4461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021320.1

Sequence Viewer

Length: 1557 bp
ATGCGCTTGTTCTGGTGGCAGCAGTTGCCTCTGCTTATACTCATTCAACTTTTACAACCCAGCAGAACAAGTTACAAAATATACGCTGAAGCATTACTAAACTTCAAGAGCAGAGTTGGAAGTCCTGAACTCTCCAGTGGTCAGATTGGAAAATATCCGTGTCTAAAACAATGGACATTTCCTGGTATCTCTTCAATTCCCCTGCGGTCTAACAGAGTCAACTTAGCACCGTTTGCTCCAAGACTTTTCATGTCACAATCTTCAATTGATGTACAAAAAGAACTCCATAAACCAAGAAACAGAAGGATAGCAGACATAGTTGATGGGGACAGCAGTGTTCCAATACTCACACCTGTACAAGAAGCTGGTGATAAAAAACCGAAACAGAAAGTTGCAGCCATCATTGGTGGAGTTGCTGCTGCTTTTCTTGTGGTTATTGTAGTGATACTAGTTTACATCTACTTGATGCGTGTCAAAAGAGTCGTTAGGCGAACATCTGATACATCATCTTCTACACCATCCCCCCATGTTGAATGGACAAGAGGGGACACATCCCCCTACGCCGTTGCTTTATCTCCATATGATACACACAACTTGAGGCAACTGTCAATATTGGAACTAGAGCAAGCTACTAGCAATTTCAATGAAAATAATATCATAGGCCAAGGTAGATTTGGTTTGGTCTACAAGGGATTGCTCCAAGATGGATCTATTGTGGCTATCAAGAGACGCCTACATGCTCCAACTCAGTATTTTTTTCAAGAGGTGAAGCACATAGCTCGTGTGAACCACGTGCATATTCTCAGGCTCATTGGTTATTGTCAAGATACAAGTCAACAGTTACTTGTCTATGACTATCTTCCAAATGGAAATGTTGGGAATCATCTATATGATGCTGAAGGTTTGCCTATTGGAAAGCTGGGTTTATGGCAAAGGTTATCGGTTGCTTTGGGAGCAGCCAAAGGACTTGCACATCTTCATAGTTTGGTACCTCCTCTCCTGCACATGAATTTCAGGACAAGCAATGTTCTTTTGGATGATAACTTTACACCCAAGGTGTCTGATTATGGATTAACCAGACTGCTAAATAAGGGTCACTATGCTGGATCATCTTCAGCCATAGACTGCTTTCTTGACCCAGAGTTAGATTCATCGAAGAAATTTTCAGAAAGAGGTGATGTGTACAGTTTTGGGGTCTTCTTACTGGAATTGATCAGCGGACGTGAAGCAAATGGCAGAAACCAGTTAAATTTGGGGGATAATTTATTATTGCAGGCGAAGGATTGTGAGGATTTGGACAGATTTGTTGATAAAACATTAGGAGACTATACAATGCAAGCTGCAACAAAACAGATGATGGAGTTAGCATTGATGTGTATAGATGCTAGTGAACAAAGACCACACATGAAGACTGTTGTTCAAGTGCTCGAACGGATACAAGCGAGAGAAATTAGCCATTTTCACATCGAAGTCGAAGAGATAGGTGCTGTGACTCTTGGTAGTGAACTTTTCAAAATGAGTGCCCTCTGTAACAGTCATCTTTTCATTCTTTTATAG

Protein Analysis

518

Amino Acids

58.06

Weight (kDa)

8.82

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 215 - 471 1e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 217 - 476 7.3e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis pycom11g11270
rosa_chinensis RchiOBHm_Chr5g0059091
rosa_laevigata RLG00000035279
rosa_multiflora Rmu_sc0002983.1_g000039
rosa_roxburghii Rroxscaffold_1G00021320
rosa_rugosa Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana Rw5G036320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 988
AccB1I GGYRCC 1 cut(s) 988
AccI GTMKAC 1 cut(s) 684
AciI CCGC 2 cut(s) 205, 1218
AclWI GGATC 2 cut(s) 715, 1114
AcsI RAATTY 3 cut(s) 1009, 1160, 1249
AcuI CTGAAG 3 cut(s) 108, 918, 1098
AcvI CACGTG 1 cut(s) 793
AcyI GRCGYC 1 cut(s) 730
AfaI GTAC 4 cut(s) 273, 357, 990, 1184
AgsI TTSAA 9 cut(s) 47, 106, 195, 264, 533, 643, 761, 1421, 1513
AhlI ACTAGT 1 cut(s) 448
AjiI CACGTC 1 cut(s) 1223
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 5 cut(s) 365, 629, 779, 919, 1340
AluI AGCT 5 cut(s) 365, 629, 779, 919, 1340
Alw21I GWGCWC 1 cut(s) 1428
Alw26I GTCTC 2 cut(s) 721, 1317
AlwI GGATC 2 cut(s) 715, 1114
AoxI GGCC 1 cut(s) 661
ApeKI GCWGC 6 cut(s) 19, 395, 416, 419, 956, 1340
ApoI RAATTY 3 cut(s) 1009, 1160, 1249
Asp718I GGTACC 1 cut(s) 988
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 380, 778, 1187
BaeGI GKGCMC 1 cut(s) 1525
BanI GGYRCC 1 cut(s) 988
BauI CACGAG 1 cut(s) 780
BbrPI CACGTG 1 cut(s) 793
BbsI GAAGAC 2 cut(s) 1189, 1415
Bbv12I GWGCWC 1 cut(s) 1428
BbvI GCAGC 6 cut(s) 31, 403, 406, 407, 968, 1327
BccI CCATC 5 cut(s) 317, 407, 526, 698, 1351
BceAI ACGGC 1 cut(s) 548
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 1 cut(s) 1428
BclI TGATCA 1 cut(s) 1212
BcoDI GTCTC 2 cut(s) 721, 1317
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 4 cut(s) 449, 620, 633, 1386
BfuI GTATCC 1 cut(s) 1428
BisI GCNGC 6 cut(s) 20, 396, 417, 420, 957, 1341
BlsI GCNGC 6 cut(s) 21, 397, 418, 421, 958, 1342
Bme1390I CCNGG 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 1223
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 3 cut(s) 456, 883, 1372
BpiI GAAGAC 2 cut(s) 1189, 1415
BpmI CTGGAG 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 616
BsaAI YACGTR 1 cut(s) 793
BsaHI GRCGYC 1 cut(s) 730
BsaJI CCNNGG 2 cut(s) 664, 1053
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bse1I ACTGG 3 cut(s) 135, 1209, 1243
Bse3DI GCAATG 1 cut(s) 1030
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 664, 1053
BseGI GGATG 3 cut(s) 518, 551, 1042
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 2 cut(s) 761, 817
BseNI ACTGG 3 cut(s) 135, 1209, 1243
BseRI GAGGAG 1 cut(s) 984
BseSI GKGCMC 1 cut(s) 1525
BseXI GCAGC 6 cut(s) 31, 403, 406, 407, 968, 1327
BseYI CCCAGC 2 cut(s) 59, 919
BsgI GTGCAG 1 cut(s) 986
BshFI GGCC 1 cut(s) 663
BshNI GGYRCC 1 cut(s) 988
BsiHKAI GWGCWC 1 cut(s) 1428
BslFI GGGAC 2 cut(s) 341, 560
BsmAI GTCTC 2 cut(s) 721, 1317
BsmBI CGTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 341, 560
BsnI GGCC 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 1428, 1525
Bsp1407I TGTACA 3 cut(s) 271, 355, 1182
Bsp143I GATC 3 cut(s) 707, 1106, 1212
BspACI CCGC 2 cut(s) 205, 1218
BspANI GGCC 1 cut(s) 663
BspCNI CTCAG 2 cut(s) 760, 816
BspLI GGNNCC 1 cut(s) 990
BspPI GGATC 2 cut(s) 715, 1114
BspT107I GGYRCC 1 cut(s) 988
BsrDI GCAATG 1 cut(s) 1030
BsrGI TGTACA 3 cut(s) 271, 355, 1182
BsrI ACTGG 3 cut(s) 135, 1209, 1243
BssECI CCNNGG 2 cut(s) 664, 1053
BssMI GATC 3 cut(s) 707, 1106, 1212
BssNI GRCGYC 1 cut(s) 730
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 664, 1053
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 6 cut(s) 231, 606, 840, 1187, 1414, 1535
Bst6I CTCTTC 2 cut(s) 196, 1470
BstACI GRCGYC 1 cut(s) 730
BstAPI GCANNNNNTGC 2 cut(s) 25, 233
BstAUI TGTACA 3 cut(s) 271, 355, 1182
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 3 cut(s) 627, 1275, 1338
BstDEI CTNAG 3 cut(s) 223, 747, 803
BstF5I GGATG 3 cut(s) 518, 551, 1042
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 710, 1109, 1215
BstMAI GTCTC 2 cut(s) 721, 1317
BstMBI GATC 3 cut(s) 707, 1106, 1212
BstMWI GCNNNNNNNGC 3 cut(s) 25, 233, 953
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 1525
BstV1I GCAGC 6 cut(s) 31, 403, 406, 407, 968, 1327
BstV2I GAAGAC 2 cut(s) 1189, 1415
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BsuI GTATCC 1 cut(s) 1428
BsuRI GGCC 1 cut(s) 663
BtrI CACGTC 1 cut(s) 1223
BtsCI GGATG 3 cut(s) 518, 551, 1042
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 142, 340
Cac8I GCNNGC 3 cut(s) 627, 1275, 1338
CfoI GCGC 1 cut(s) 6
CseI GACGC 1 cut(s) 738
Csp6I GTAC 4 cut(s) 272, 356, 989, 1183
CviAII CATG 5 cut(s) 250, 527, 737, 1006, 1405
CviQI GTAC 4 cut(s) 272, 356, 989, 1183
DdeI CTNAG 3 cut(s) 223, 747, 803
DpnI GATC 3 cut(s) 709, 1108, 1214
DpnII GATC 3 cut(s) 707, 1106, 1212
Eam1104I CTCTTC 2 cut(s) 196, 1470
EarI CTCTTC 2 cut(s) 196, 1470
Eco130I CCWWGG 2 cut(s) 664, 1053
Eco57I CTGAAG 3 cut(s) 108, 918, 1098
Eco72I CACGTG 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 664, 1053
ErhI CCWWGG 2 cut(s) 664, 1053
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 5 cut(s) 253, 530, 740, 1009, 1408
FaqI GGGAC 2 cut(s) 341, 560
FatI CATG 5 cut(s) 249, 526, 736, 1005, 1404
FauNDI CATATG 1 cut(s) 580
FbaI TGATCA 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 6 cut(s) 20, 396, 417, 420, 957, 1341
FokI GGATG 3 cut(s) 505, 538, 1049
Fsp4HI GCNGC 6 cut(s) 20, 396, 417, 420, 957, 1341
FspBI CTAG 4 cut(s) 449, 620, 633, 1386
GlaI GCGC 1 cut(s) 5
GluI GCNGC 6 cut(s) 20, 396, 417, 420, 957, 1341
GsaI CCCAGC 2 cut(s) 63, 923
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 1 cut(s) 663
HgaI GACGC 1 cut(s) 738
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 730
Hin1II CATG 5 cut(s) 253, 530, 740, 1009, 1408
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 2 cut(s) 220, 836
HindII GTYRAC 2 cut(s) 220, 836
HinfI GANTC 5 cut(s) 216, 480, 880, 1148, 1492
HphI GGTGA 3 cut(s) 380, 778, 1187
Hpy166II GTNNAC 8 cut(s) 220, 454, 685, 787, 836, 1183, 1391, 1505
Hpy188I TCNGA 4 cut(s) 144, 499, 1063, 1168
Hpy188III TCNNGA 7 cut(s) 106, 125, 724, 761, 824, 1015, 1133
Hpy8I GTNNAC 8 cut(s) 220, 454, 685, 787, 836, 1183, 1391, 1505
HpyAV CCTTC 3 cut(s) 297, 893, 1273
HpyCH4III ACNGT 6 cut(s) 231, 606, 840, 1187, 1414, 1535
HpyCH4IV ACGT 2 cut(s) 792, 1222
HpyCH4V TGCA 7 cut(s) 395, 796, 971, 1003, 1273, 1336, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 233, 953
HpyF3I CTNAG 3 cut(s) 223, 747, 803
HpySE526I ACGT 2 cut(s) 792, 1222
Hsp92I GRCGYC 1 cut(s) 730
Hsp92II CATG 5 cut(s) 253, 530, 740, 1009, 1408
HspAI GCGC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 992
Ksp22I TGATCA 1 cut(s) 1212
Kzo9I GATC 3 cut(s) 707, 1106, 1212
LmnI GCTCC 4 cut(s) 241, 702, 745, 953
Lsp1109I GCAGC 6 cut(s) 31, 403, 406, 407, 968, 1327
LweI GCATC 3 cut(s) 456, 883, 1372
MaeI CTAG 4 cut(s) 449, 620, 633, 1386
MaeII ACGT 2 cut(s) 792, 1222
MaeIII GTNAC 6 cut(s) 71, 252, 840, 1094, 1489, 1529
MalI GATC 3 cut(s) 709, 1108, 1214
MboI GATC 3 cut(s) 707, 1106, 1212
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 2 cut(s) 1428, 1525
MluCI AATT 9 cut(s) 195, 264, 637, 1009, 1160, 1208, 1249, 1261, 1449
MlyI GAGTC 3 cut(s) 225, 489, 1486
MmeI TCCRAC 2 cut(s) 97, 767
MnlI CCTC 9 cut(s) 39, 536, 591, 757, 1002, 1005, 1166, 1282, 1535
MseI TTAA 2 cut(s) 1073, 1247
MslI CAYNNNNRTG 2 cut(s) 888, 1372
MspA1I CMGCKG 1 cut(s) 1218
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 25, 233, 953
NdeI CATATG 1 cut(s) 580
NdeII GATC 3 cut(s) 707, 1106, 1212
NlaIII CATG 5 cut(s) 253, 530, 740, 1009, 1408
NlaIV GGNNCC 1 cut(s) 990
NmuCI GTSAC 3 cut(s) 252, 1094, 1489
NspI RCATGY 1 cut(s) 740
PfeI GAWTC 2 cut(s) 880, 1148
PkrI GCNGC 6 cut(s) 21, 397, 418, 421, 958, 1342
PleI GAGTC 3 cut(s) 224, 488, 1486
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
PpsI GAGTC 3 cut(s) 224, 488, 1486
Ppu21I YACGTR 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 181
PspCI CACGTG 1 cut(s) 793
PspFI CCCAGC 2 cut(s) 59, 919
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 990
PsrI GAACNNNNNNTAC 2 cut(s) 484, 516
PsuI RGATCY 1 cut(s) 707
RsaI GTAC 4 cut(s) 273, 357, 990, 1184
RsaNI GTAC 4 cut(s) 272, 356, 989, 1183
RseI CAYNNNNRTG 2 cut(s) 888, 1372
SaqAI TTAA 2 cut(s) 1073, 1247
SatI GCNGC 6 cut(s) 20, 396, 417, 420, 957, 1341
Sau3AI GATC 3 cut(s) 707, 1106, 1212
SchI GAGTC 3 cut(s) 225, 489, 1486
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 1428, 1525
SfaNI GCATC 3 cut(s) 456, 883, 1372
SmiMI CAYNNNNRTG 2 cut(s) 888, 1372
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
SpeI ACTAGT 1 cut(s) 448
Sse9I AATT 9 cut(s) 195, 264, 637, 1009, 1160, 1208, 1249, 1261, 1449
SsiI CCGC 2 cut(s) 205, 1218
SspI AATATT 1 cut(s) 612
SspMI CTAG 4 cut(s) 449, 620, 633, 1386
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 2 cut(s) 664, 1053
TaaI ACNGT 6 cut(s) 231, 606, 840, 1187, 1414, 1535
TaiI ACGT 2 cut(s) 795, 1225
TaqI TCGA 4 cut(s) 1154, 1428, 1467, 1473
TasI AATT 9 cut(s) 195, 264, 637, 1009, 1160, 1208, 1249, 1261, 1449
TatI WGTACW 3 cut(s) 271, 355, 1182
TfiI GAWTC 2 cut(s) 880, 1148
Tru1I TTAA 2 cut(s) 1073, 1247
Tru9I TTAA 2 cut(s) 1073, 1247
TscAI CASTG 2 cut(s) 142, 340
TseFI GTSAC 3 cut(s) 252, 1094, 1489
TseI GCWGC 6 cut(s) 19, 395, 416, 419, 956, 1340
Tsp45I GTSAC 3 cut(s) 252, 1094, 1489
TspDTI ATGAA 7 cut(s) 238, 660, 968, 1022, 1140, 1421, 1534
TspGWI ACGGA 2 cut(s) 147, 1447
TspRI CASTG 2 cut(s) 142, 340
XapI RAATTY 3 cut(s) 1009, 1160, 1249
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 684
XspI CTAG 4 cut(s) 449, 620, 633, 1386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.