Rorug05G0321000

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
38170886 .. 38172882
1997 bp
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UTR
Exon/CDS
Intron
Rorug05G0321000.1

Sequence Viewer

Length: 354 bp
ATGTTTGAGCTTACCCATGTCCACGATAATGAAAAACCTGATGAACCGAATTCCAAAGCTATTGCCTTGATGAAGGACAAGATTGACAAGATGAAGACTACAAAGAGGGCATCCCAACTTCCAGAGGTTCTTAATGATTTTGAAATCAATGAAGTATATGCGTCTGTGCTTGGAAAAGAGACACGTGGAGGGGTGCGAGGATTTGGCATTGGAGCCATACCTGAACAAGTTCCTGGTGTACTAGTGCAGAAGAGATGTGTTCATTTAGAGGTACAAGCAATGAGAGAACAACATGAGCTTGAGATTGAAACGATTCGGAAGGAGAGCCAAAAAAAGGAAGATAAGCAGAAATGA

Protein Analysis

117

Amino Acids

13.37

Weight (kDa)

6.43

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis pycom11g11270
rosa_chinensis RchiOBHm_Chr5g0059091
rosa_laevigata RLG00000035279
rosa_multiflora Rmu_sc0002983.1_g000039
rosa_roxburghii Rroxscaffold_1G00021320
rosa_rugosa Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana Rw5G036320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 49
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 2 cut(s) 240, 273
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 143, 308
AhlI ACTAGT 1 cut(s) 241
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 3 cut(s) 10, 59, 298
AluI AGCT 3 cut(s) 10, 59, 298
Alw26I GTCTC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 2 cut(s) 228, 312
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 185
BstF5I GGATG 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 110
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 239, 272
CviAII CATG 2 cut(s) 17, 293
CviJI RGCY 5 cut(s) 10, 59, 215, 298, 327
CviKI_1 RGCY 5 cut(s) 10, 59, 215, 298, 327
CviQI GTAC 2 cut(s) 239, 272
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 20, 296
FaiI YATR 5 cut(s) 18, 157, 159, 218, 294
FatI CATG 2 cut(s) 16, 292
FokI GGATG 1 cut(s) 97
FspBI CTAG 1 cut(s) 242
HgaI GACGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 20, 296
HinfI GANTC 1 cut(s) 313
Hpy166II GTNNAC 2 cut(s) 22, 239
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 22, 239
HpyAV CCTTC 2 cut(s) 67, 313
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 2 cut(s) 20, 296
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 51, 135, 219, 234, 246
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 184
MboII GAAGA 3 cut(s) 106, 262, 350
MluCI AATT 1 cut(s) 49
MnlI CCTC 5 cut(s) 99, 118, 182, 191, 262
MroXI GAANNNNTTC 2 cut(s) 228, 312
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NlaIII CATG 2 cut(s) 20, 296
NlaIV GGNNCC 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 228, 312
PfeI GAWTC 1 cut(s) 313
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 232
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 214
RsaI GTAC 2 cut(s) 240, 273
RsaNI GTAC 2 cut(s) 239, 272
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 234
SetI ASST 8 cut(s) 12, 40, 61, 129, 187, 223, 273, 300
SfaNI GCATC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 187
TasI AATT 1 cut(s) 49
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TspDTI ATGAA 6 cut(s) 45, 57, 86, 107, 165, 251
XapI RAATTY 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 228, 312
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.