Rh5BG397300

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
64307073 .. 64312128
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG397300.1

Sequence Viewer

Length: 1269 bp
ATGTCACAATCTTCAATTGATGTACAAAAAGAACTCCATAAACCAAGAAACAGAAGGATAGCAGACATAGTTGATGGGGACAGCAGTGTTCCAACATTCACACCTGTACAAGAAGCTGGTGATAAAAAACCAAAACAGAAAGTTGCAGCCATCATTGGTGGAGTTGCTGCTGCTTTTCTTGTGGTTATTGTAGTGATACTAGTTTACATCTACTTGACGCGTGTCAAAAGAGTCGTCAGGCGAACATCTGATACATCATCTTCTACACCATCCCCCCATGTTGAATGGACAAGAGGGGACACATCCCCCTACGCCGTTGCTTTATCTCCATATGATACACACAACTTGAGGCAACTGTCAATATTGGAACTAGAGCAAGCTACTAGCAATTTCAATGAAAATAATATCATAGGCCAAGGTAGATTTGGTTTGGTCTACAAGGGATTGCTCCAAGATGGATCTATTGTGGCTATCAAGAGACGCCTACATGCTCCGACTCAGTATTTTTTTCAAGAGGTGAAGCACATAGCTCGTGTGAACCACGTGCATATTCTCAGGCTCATTGGTTATTGTCAAGATACAAGTCAACAGTTACTTGTCTATGACTATCTTCCAAATGGAAATGTTGGGAATCATCTATATGATGCTGAAGGTTTGCCTAATGGAAAGCTCGGTTTATGGCAAAGGTTATCGGTTGCTTTGGGAGCAGCCAAAGGACTTGCACATCTTCATAGTTTGGTACCTCCTCTCCTGCACATGAATTTCAGGACAAGCAATGTTCTTTTGGATGATAACTTTACACCCAAGGTGTCTGATTATGGATTAACCAGACTGCTAAATAAGGGTCACTATGCTGGATCATCTTCAGCCATAGACTGCTTTCTTGACCCAGAGTTAGATTCATCGAAGAAATTTTCAGAAAGAGGTGATGTGTACAGTTTTGGGGTCTTCTTACTGGAATTGATCAGCGGACGTGAAGCAAATGGCAGAAACCAGTTAAATTTGGGGGATAATTTATTATTGCAGGCGAAGGATTGTGAGGATTTGGACAGATTTGTTGATAAAACATTAGGAGACTATACAATGCAAGCTGCAACAAAACAGATGATGGAGTTAGCATTGATGTGTATAGAGGCTAGTGAACAAAGACCACACATGAAGACTGTTGTTCAAGTGCTCGAACGGATTCAAGCGAAAGAAATTAGCCATTTTCACATCGAAGTCGAGGAGATAGGTGCTGTGACTCTTGGTAGTGAACTTTTCAAATGA

Protein Analysis

422

Amino Acids

47.02

Weight (kDa)

6.74

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 132 - 389 1.8e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 134 - 393 8.7e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis pycom11g11270
rosa_chinensis RchiOBHm_Chr5g0059091
rosa_laevigata RLG00000035279
rosa_multiflora Rmu_sc0002983.1_g000039
rosa_roxburghii Rroxscaffold_1G00021320
rosa_rugosa Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana Rw5G036320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 739
AccB1I GGYRCC 1 cut(s) 739
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 220
AciI CCGC 1 cut(s) 969
AclWI GGATC 2 cut(s) 466, 865
AcsI RAATTY 3 cut(s) 760, 911, 1000
AcuI CTGAAG 2 cut(s) 669, 849
AcvI CACGTG 1 cut(s) 544
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 4 cut(s) 24, 108, 741, 935
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 7 cut(s) 15, 284, 394, 512, 1172, 1190, 1264
AhlI ACTAGT 1 cut(s) 199
AjiI CACGTC 1 cut(s) 974
AluBI AGCT 5 cut(s) 116, 380, 530, 670, 1091
AluI AGCT 5 cut(s) 116, 380, 530, 670, 1091
Alw21I GWGCWC 1 cut(s) 1179
Alw26I GTCTC 2 cut(s) 472, 1068
AlwI GGATC 2 cut(s) 466, 865
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 5 cut(s) 146, 167, 170, 707, 1091
ApoI RAATTY 3 cut(s) 760, 911, 1000
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
Asp700I GAANNNNTTC 1 cut(s) 1185
Asp718I GGTACC 1 cut(s) 739
AsuHPI GGTGA 3 cut(s) 131, 529, 938
BanI GGYRCC 1 cut(s) 739
BauI CACGAG 1 cut(s) 531
BbrPI CACGTG 1 cut(s) 544
BbsI GAAGAC 2 cut(s) 940, 1166
Bbv12I GWGCWC 1 cut(s) 1179
BbvI GCAGC 5 cut(s) 154, 157, 158, 719, 1078
BccI CCATC 5 cut(s) 68, 158, 277, 449, 1102
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BclI TGATCA 1 cut(s) 963
BcoDI GTCTC 2 cut(s) 472, 1068
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 4 cut(s) 200, 371, 384, 1137
BisI GCNGC 5 cut(s) 147, 168, 171, 708, 1092
BlsI GCNGC 5 cut(s) 148, 169, 172, 709, 1093
BmgBI CACGTC 1 cut(s) 974
BmiI GGNNCC 1 cut(s) 741
BmsI GCATC 1 cut(s) 634
BoxI GACNNNNGTC 1 cut(s) 221
BpiI GAAGAC 2 cut(s) 940, 1166
BpuEI CTTGAG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 544
BsaHI GRCGYC 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 415, 804
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bse1I ACTGG 2 cut(s) 960, 994
Bse3DI GCAATG 1 cut(s) 781
BseDI CCNNGG 2 cut(s) 415, 804
BseGI GGATG 3 cut(s) 269, 302, 793
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 2 cut(s) 512, 568
BseNI ACTGG 2 cut(s) 960, 994
BseRI GAGGAG 2 cut(s) 735, 1241
BseXI GCAGC 5 cut(s) 154, 157, 158, 719, 1078
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 739
BsiHKAI GWGCWC 1 cut(s) 1179
BslFI GGGAC 2 cut(s) 92, 311
BsmAI GTCTC 2 cut(s) 472, 1068
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 92, 311
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 1179
Bsp1407I TGTACA 3 cut(s) 22, 106, 933
Bsp143I GATC 3 cut(s) 458, 857, 963
BspACI CCGC 1 cut(s) 969
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 2 cut(s) 511, 567
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 741
BspPI GGATC 2 cut(s) 466, 865
BspT107I GGYRCC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 781
BsrGI TGTACA 3 cut(s) 22, 106, 933
BsrI ACTGG 2 cut(s) 960, 994
BssECI CCNNGG 2 cut(s) 415, 804
BssMI GATC 3 cut(s) 458, 857, 963
BssNI GRCGYC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 2 cut(s) 415, 804
Bst2BI CACGAG 1 cut(s) 531
Bst4CI ACNGT 4 cut(s) 357, 591, 938, 1165
BstACI GRCGYC 1 cut(s) 481
BstAUI TGTACA 3 cut(s) 22, 106, 933
BstBAI YACGTR 1 cut(s) 544
BstC8I GCNNGC 3 cut(s) 378, 1026, 1089
BstDEI CTNAG 2 cut(s) 498, 554
BstF5I GGATG 3 cut(s) 269, 302, 793
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 3 cut(s) 461, 860, 966
BstMAI GTCTC 2 cut(s) 472, 1068
BstMBI GATC 3 cut(s) 458, 857, 963
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 221
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 5 cut(s) 154, 157, 158, 719, 1078
BstV2I GAAGAC 2 cut(s) 940, 1166
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 1 cut(s) 414
BtrI CACGTC 1 cut(s) 974
BtsCI GGATG 3 cut(s) 269, 302, 793
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 3 cut(s) 378, 1026, 1089
CseI GACGC 2 cut(s) 226, 489
Csp6I GTAC 4 cut(s) 23, 107, 740, 934
CviAII CATG 4 cut(s) 278, 488, 757, 1156
CviQI GTAC 4 cut(s) 23, 107, 740, 934
DdeI CTNAG 2 cut(s) 498, 554
DpnI GATC 3 cut(s) 460, 859, 965
DpnII GATC 3 cut(s) 458, 857, 963
Eco130I CCWWGG 2 cut(s) 415, 804
Eco57I CTGAAG 2 cut(s) 669, 849
Eco72I CACGTG 1 cut(s) 544
EcoT14I CCWWGG 2 cut(s) 415, 804
ErhI CCWWGG 2 cut(s) 415, 804
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 4 cut(s) 281, 491, 760, 1159
FaqI GGGAC 2 cut(s) 92, 311
FatI CATG 4 cut(s) 277, 487, 756, 1155
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 963
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 5 cut(s) 147, 168, 171, 708, 1092
FokI GGATG 3 cut(s) 256, 289, 800
Fsp4HI GCNGC 5 cut(s) 147, 168, 171, 708, 1092
FspBI CTAG 4 cut(s) 200, 371, 384, 1137
GluI GCNGC 5 cut(s) 147, 168, 171, 708, 1092
HaeIII GGCC 1 cut(s) 414
HgaI GACGC 2 cut(s) 226, 489
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 4 cut(s) 281, 491, 760, 1159
HincII GTYRAC 1 cut(s) 587
HindII GTYRAC 1 cut(s) 587
HinfI GANTC 6 cut(s) 231, 496, 631, 899, 1186, 1243
HphI GGTGA 3 cut(s) 131, 529, 938
Hpy166II GTNNAC 7 cut(s) 205, 436, 538, 587, 934, 1142, 1256
Hpy188I TCNGA 4 cut(s) 250, 495, 814, 919
Hpy188III TCNNGA 5 cut(s) 475, 512, 575, 766, 884
Hpy8I GTNNAC 7 cut(s) 205, 436, 538, 587, 934, 1142, 1256
HpyAV CCTTC 3 cut(s) 48, 644, 1024
HpyCH4III ACNGT 4 cut(s) 357, 591, 938, 1165
HpyCH4IV ACGT 2 cut(s) 543, 973
HpyCH4V TGCA 7 cut(s) 146, 547, 722, 754, 1024, 1087, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 2 cut(s) 498, 554
HpySE526I ACGT 2 cut(s) 543, 973
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 4 cut(s) 281, 491, 760, 1159
KpnI GGTACC 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 963
Kzo9I GATC 3 cut(s) 458, 857, 963
LmnI GCTCC 3 cut(s) 453, 496, 704
Lsp1109I GCAGC 5 cut(s) 154, 157, 158, 719, 1078
LweI GCATC 1 cut(s) 634
MaeI CTAG 4 cut(s) 200, 371, 384, 1137
MaeII ACGT 2 cut(s) 543, 973
MaeIII GTNAC 4 cut(s) 3, 591, 845, 1240
MalI GATC 3 cut(s) 460, 859, 965
MboI GATC 3 cut(s) 458, 857, 963
MboII GAAGA 8 cut(s) 3, 252, 602, 719, 855, 919, 940, 1171
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 1179
MluCI AATT 8 cut(s) 15, 388, 760, 911, 959, 1000, 1012, 1200
MluI ACGCGT 1 cut(s) 218
MlyI GAGTC 3 cut(s) 240, 490, 1237
MmeI TCCRAC 2 cut(s) 116, 518
MnlI CCTC 9 cut(s) 287, 342, 508, 753, 756, 917, 1033, 1126, 1219
MroXI GAANNNNTTC 1 cut(s) 1185
MseI TTAA 2 cut(s) 824, 998
MslI CAYNNNNRTG 2 cut(s) 639, 1123
MspA1I CMGCKG 1 cut(s) 969
MunI CAATTG 1 cut(s) 15
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 704
NdeI CATATG 1 cut(s) 331
NdeII GATC 3 cut(s) 458, 857, 963
NlaIII CATG 4 cut(s) 281, 491, 760, 1159
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 3 cut(s) 3, 845, 1240
NspI RCATGY 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 1185
PfeI GAWTC 3 cut(s) 631, 899, 1186
PkrI GCNGC 5 cut(s) 148, 169, 172, 709, 1093
PleI GAGTC 3 cut(s) 239, 490, 1237
PmaCI CACGTG 1 cut(s) 544
PmlI CACGTG 1 cut(s) 544
PpsI GAGTC 3 cut(s) 239, 490, 1237
Ppu21I YACGTR 1 cut(s) 544
PshAI GACNNNNGTC 1 cut(s) 221
PspCI CACGTG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 741
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 4 cut(s) 24, 108, 741, 935
RsaNI GTAC 4 cut(s) 23, 107, 740, 934
RseI CAYNNNNRTG 2 cut(s) 639, 1123
SaqAI TTAA 2 cut(s) 824, 998
SatI GCNGC 5 cut(s) 147, 168, 171, 708, 1092
Sau3AI GATC 3 cut(s) 458, 857, 963
SchI GAGTC 3 cut(s) 240, 490, 1237
SduI GDGCHC 1 cut(s) 1179
SfaNI GCATC 1 cut(s) 634
SmiMI CAYNNNNRTG 2 cut(s) 639, 1123
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
SpeI ACTAGT 1 cut(s) 199
Sse9I AATT 8 cut(s) 15, 388, 760, 911, 959, 1000, 1012, 1200
SsiI CCGC 1 cut(s) 969
SspI AATATT 1 cut(s) 363
SspMI CTAG 4 cut(s) 200, 371, 384, 1137
StyI CCWWGG 2 cut(s) 415, 804
TaaI ACNGT 4 cut(s) 357, 591, 938, 1165
TaiI ACGT 2 cut(s) 546, 976
TaqI TCGA 4 cut(s) 905, 1179, 1218, 1224
TasI AATT 8 cut(s) 15, 388, 760, 911, 959, 1000, 1012, 1200
TatI WGTACW 3 cut(s) 22, 106, 933
TfiI GAWTC 3 cut(s) 631, 899, 1186
Tru1I TTAA 2 cut(s) 824, 998
Tru9I TTAA 2 cut(s) 824, 998
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 3 cut(s) 3, 845, 1240
TseI GCWGC 5 cut(s) 146, 167, 170, 707, 1091
Tsp45I GTSAC 3 cut(s) 3, 845, 1240
TspDTI ATGAA 5 cut(s) 411, 719, 773, 891, 1172
TspGWI ACGGA 1 cut(s) 1198
TspRI CASTG 1 cut(s) 91
XapI RAATTY 3 cut(s) 760, 911, 1000
XceI RCATGY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 1185
XspI CTAG 4 cut(s) 200, 371, 384, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.