Rh5AG385800

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
66675479 .. 66680621
5143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG385800.1

Sequence Viewer

Length: 1335 bp
ATGCGCTTGTTCTGGTGGCAGCAGTTGCCTCTGCTTATACTCATTCAACTTTTACAACCCAGCAGAACAAGTTACAAAATATACGCTGAAGCTTTACTGACCTTCAAGAGCAGAGTTGGAAGTCCTGAACTCTCCAGTGGTCAGATTGGAAAATATCCGTGTCTAAAACAATGGACATGTCTCAAATATTATAAACTGAAGGACCCTTGTGTTCCTTTCAGCACATTTCCTGGTATCTCTTCAATTCCCCTGCGGTCTAACAGAGTCAACTTAGCACCGTTTGCTCCAAGACTTTTCATGTCACAATCTTCAATTGATGTACAAAAAGAGCTCCATAAACCAAGAAACAGAAGGATAGCAGACATAGTTGATGGGGACAGCAGTGTTCCAACATTCACACCTGTACGAGAATCTGGTGATAAAAAACCGAAACCGAAAGTTGCAGCCATCATTGGTGGAGTTGCTGCTGCTTTTCTTGTGGTTATTGTAGTGATACTAGTTTACATCTACTTGATGCGTGTCAAAAGAGTCGTTAGGCAAACATCTGATACATCATCTTCTACACCATCCCCTCATGTTGAATGGACAAGAGGGGACACATCCCCCTATGCCGTTGCTTTATCTCCATATGATACACACAACTTGAGGCAACTGTCAATATTGGAACTAGAGCAAGCTACTAGCAATTTCAATGAAAATAATATCATAGGCCAAGGTAGATTTGGTTTGGTCTACAAAGGATTGCTCCAAGATGGATCTATTGTGGCTATCAAGAGACGCCTACATGCTCCAACTCAGTATTTTTTTCAAGAGGTGAAGCACATAGCTCGTGTGAACCACGTGCATATTCTCAGGCTCATTGGTTATTGTCAAGATACAAGTCAACAGTTACTTGTCTATGACTATCTTCCAAATGGAAATGTTGGGAATCATCTATATGATGCTGAAGGTTTGCCTATTGGAAAGCTGGGTTTATGGCAAAGGTTATCGGTTGCTTTGGGAGCAGCCAAAGGACTTGCACATCTTCATAGTTTGGTACCTCCTCTCCTGCACATGAATTTCAGGACAAGCAATGTTCTTTTGGATGATAACTTTACACCCAAGGTGTCTGATTATGGATTAACCAGACTGCTAAATAAGGGTCACTATGCTGGATCATCTTCAGCCATAGACTGCTTTCTTGACCCAGAGTATGTAATCTCTCTTCAGTCCACTAAATTTTGTGTGCTACAAGATAGAATGCAGATATCATCTCTTTGTATCTGCAATGCTATTTCTACTAGCGGTCCAGATCACTTGAAGTGCAAGAATGGCCTGCAAGGAAAACAAGAGTAA

Protein Analysis

444

Amino Acids

49.65

Weight (kDa)

9.44

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 231 - 399 7.6e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 233 - 384 5.2e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis pycom11g11270
rosa_chinensis RchiOBHm_Chr5g0059091
rosa_laevigata RLG00000035279
rosa_multiflora Rmu_sc0002983.1_g000039
rosa_roxburghii Rroxscaffold_1G00021320
rosa_rugosa Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana Rw5G036320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 732
AciI CCGC 2 cut(s) 253, 1284
AclWI GGATC 2 cut(s) 763, 1162
AcsI RAATTY 2 cut(s) 1057, 1217
AcuI CTGAAG 5 cut(s) 108, 218, 966, 1146, 1190
AcvI CACGTG 1 cut(s) 841
AcyI GRCGYC 1 cut(s) 778
AfaI GTAC 3 cut(s) 321, 405, 1038
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 8 cut(s) 47, 106, 243, 312, 581, 691, 809, 1300
AhlI ACTAGT 1 cut(s) 496
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 5 cut(s) 92, 331, 677, 827, 967
AluI AGCT 5 cut(s) 92, 331, 677, 827, 967
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 185, 769
AlwI GGATC 2 cut(s) 763, 1162
AoxI GGCC 2 cut(s) 709, 1312
ApeKI GCWGC 5 cut(s) 19, 443, 464, 467, 1004
ApoI RAATTY 2 cut(s) 1057, 1217
Asp718I GGTACC 1 cut(s) 1036
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 202, 1286
AsuHPI GGTGA 2 cut(s) 428, 826
AvaII GGWCC 2 cut(s) 202, 1286
BanI GGYRCC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 333
BarI GAAGNNNNNNTAC 2 cut(s) 1188, 1220
BauI CACGAG 1 cut(s) 828
BbrPI CACGTG 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 31, 451, 454, 455, 1016
BccI CCATC 4 cut(s) 365, 455, 574, 746
BceAI ACGGC 1 cut(s) 596
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 185, 769
BcuI ACTAGT 1 cut(s) 496
BfaI CTAG 4 cut(s) 497, 668, 681, 1281
BisI GCNGC 5 cut(s) 20, 444, 465, 468, 1005
BlsI GCNGC 5 cut(s) 21, 445, 466, 469, 1006
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 202, 1286
BmgT120I GGNCC 2 cut(s) 202, 1286
BmiI GGNNCC 2 cut(s) 204, 1038
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 504, 931
BpmI CTGGAG 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 664
BsaAI YACGTR 1 cut(s) 841
BsaHI GRCGYC 1 cut(s) 778
BsaJI CCNNGG 2 cut(s) 712, 1101
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 1078, 1273
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 712, 1101
BseGI GGATG 3 cut(s) 566, 599, 1090
BseMI GCAATG 2 cut(s) 1078, 1273
BseMII CTCAG 2 cut(s) 809, 865
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 1032
BseXI GCAGC 5 cut(s) 31, 451, 454, 455, 1016
BseYI CCCAGC 2 cut(s) 59, 967
BsgI GTGCAG 1 cut(s) 1034
BshFI GGCC 2 cut(s) 711, 1314
BshNI GGYRCC 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 333
BslFI GGGAC 2 cut(s) 389, 608
BsmAI GTCTC 2 cut(s) 185, 769
BsmBI CGTCTC 1 cut(s) 769
BsmFI GGGAC 2 cut(s) 389, 608
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 2 cut(s) 711, 1314
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 3 cut(s) 755, 1154, 1291
BspACI CCGC 2 cut(s) 253, 1284
BspANI GGCC 2 cut(s) 711, 1314
BspCNI CTCAG 2 cut(s) 808, 864
BspLI GGNNCC 2 cut(s) 204, 1038
BspPI GGATC 2 cut(s) 763, 1162
BspT107I GGYRCC 1 cut(s) 1036
BsrDI GCAATG 2 cut(s) 1078, 1273
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 712, 1101
BssMI GATC 3 cut(s) 755, 1154, 1291
BssNI GRCGYC 1 cut(s) 778
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 2 cut(s) 712, 1101
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 279, 654, 888
Bst6I CTCTTC 2 cut(s) 244, 1209
BstACI GRCGYC 1 cut(s) 778
BstAPI GCANNNNNTGC 2 cut(s) 25, 281
BstAUI TGTACA 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 841
BstC8I GCNNGC 2 cut(s) 675, 1316
BstDEI CTNAG 3 cut(s) 271, 795, 851
BstF5I GGATG 3 cut(s) 566, 599, 1090
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 758, 1157, 1294
BstMAI GTCTC 2 cut(s) 185, 769
BstMBI GATC 3 cut(s) 755, 1154, 1291
BstMWI GCNNNNNNNGC 4 cut(s) 25, 281, 1001, 1311
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 2 cut(s) 180, 788
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 5 cut(s) 31, 451, 454, 455, 1016
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
BsuRI GGCC 2 cut(s) 711, 1314
BtsCI GGATG 3 cut(s) 566, 599, 1090
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 142, 388
Cac8I GCNNGC 2 cut(s) 675, 1316
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 202, 1286
CseI GACGC 1 cut(s) 786
Csp6I GTAC 3 cut(s) 320, 404, 1037
CviAII CATG 5 cut(s) 177, 298, 575, 785, 1054
CviQI GTAC 3 cut(s) 320, 404, 1037
DdeI CTNAG 3 cut(s) 271, 795, 851
DpnI GATC 3 cut(s) 757, 1156, 1293
DpnII GATC 3 cut(s) 755, 1154, 1291
Eam1104I CTCTTC 2 cut(s) 244, 1209
EarI CTCTTC 2 cut(s) 244, 1209
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 712, 1101
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 1248
Eco47I GGWCC 2 cut(s) 202, 1286
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 5 cut(s) 108, 218, 966, 1146, 1190
Eco72I CACGTG 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 712, 1101
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 712, 1101
Esp3I CGTCTC 1 cut(s) 769
FaeI CATG 5 cut(s) 180, 301, 578, 788, 1057
FaqI GGGAC 2 cut(s) 389, 608
FatI CATG 5 cut(s) 176, 297, 574, 784, 1053
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 20, 444, 465, 468, 1005
FokI GGATG 3 cut(s) 553, 586, 1097
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 5 cut(s) 20, 444, 465, 468, 1005
FspBI CTAG 4 cut(s) 497, 668, 681, 1281
GlaI GCGC 1 cut(s) 5
GluI GCNGC 5 cut(s) 20, 444, 465, 468, 1005
GsaI CCCAGC 2 cut(s) 63, 971
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 2 cut(s) 711, 1314
HgaI GACGC 1 cut(s) 786
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 778
Hin1II CATG 5 cut(s) 180, 301, 578, 788, 1057
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 2 cut(s) 268, 884
HindII GTYRAC 2 cut(s) 268, 884
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 4 cut(s) 264, 410, 528, 928
HphI GGTGA 2 cut(s) 428, 826
Hpy166II GTNNAC 6 cut(s) 268, 502, 733, 835, 884, 1212
Hpy188I TCNGA 3 cut(s) 144, 547, 1111
Hpy188III TCNNGA 8 cut(s) 106, 125, 772, 809, 872, 1063, 1181, 1289
Hpy8I GTNNAC 6 cut(s) 268, 502, 733, 835, 884, 1212
HpyAV CCTTC 4 cut(s) 112, 193, 345, 941
HpyCH4III ACNGT 3 cut(s) 279, 654, 888
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 8 cut(s) 443, 844, 1019, 1051, 1243, 1266, 1305, 1318
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 281, 1001, 1311
HpyF3I CTNAG 3 cut(s) 271, 795, 851
HpySE526I ACGT 1 cut(s) 840
Hsp92I GRCGYC 1 cut(s) 778
Hsp92II CATG 5 cut(s) 180, 301, 578, 788, 1057
HspAI GCGC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 1040
Kzo9I GATC 3 cut(s) 755, 1154, 1291
LmnI GCTCC 5 cut(s) 289, 336, 750, 793, 1001
Lsp1109I GCAGC 5 cut(s) 31, 451, 454, 455, 1016
LweI GCATC 2 cut(s) 504, 931
MaeI CTAG 4 cut(s) 497, 668, 681, 1281
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 4 cut(s) 71, 300, 888, 1142
MalI GATC 3 cut(s) 757, 1156, 1293
MboI GATC 3 cut(s) 755, 1154, 1291
MboII GAAGA 7 cut(s) 231, 300, 549, 899, 1016, 1152, 1196
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 243, 312, 685, 1057, 1217
MlyI GAGTC 2 cut(s) 273, 537
MmeI TCCRAC 3 cut(s) 97, 413, 815
MnlI CCTC 7 cut(s) 39, 582, 584, 639, 805, 1050, 1053
MseI TTAA 1 cut(s) 1121
MslI CAYNNNNRTG 1 cut(s) 936
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 1245
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 4 cut(s) 25, 281, 1001, 1311
NdeI CATATG 1 cut(s) 628
NdeII GATC 3 cut(s) 755, 1154, 1291
NlaIII CATG 5 cut(s) 180, 301, 578, 788, 1057
NlaIV GGNNCC 2 cut(s) 204, 1038
NmuCI GTSAC 2 cut(s) 300, 1142
NspI RCATGY 2 cut(s) 180, 788
PciI ACATGT 1 cut(s) 176
PctI GAATGC 1 cut(s) 1245
PfeI GAWTC 2 cut(s) 410, 928
PkrI GCNGC 5 cut(s) 21, 445, 466, 469, 1006
PleI GAGTC 2 cut(s) 272, 536
PmaCI CACGTG 1 cut(s) 841
PmlI CACGTG 1 cut(s) 841
PpsI GAGTC 2 cut(s) 272, 536
Ppu21I YACGTR 1 cut(s) 841
PpuMI RGGWCCY 1 cut(s) 202
PscI ACATGT 1 cut(s) 176
PsiI TTATAA 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 841
PspFI CCCAGC 2 cut(s) 59, 967
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 204, 1038
PspPI GGNCC 2 cut(s) 202, 1286
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 1 cut(s) 755
RsaI GTAC 3 cut(s) 321, 405, 1038
RsaNI GTAC 3 cut(s) 320, 404, 1037
RseI CAYNNNNRTG 1 cut(s) 936
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 1121
SatI GCNGC 5 cut(s) 20, 444, 465, 468, 1005
Sau3AI GATC 3 cut(s) 755, 1154, 1291
Sau96I GGNCC 2 cut(s) 202, 1286
SchI GAGTC 2 cut(s) 273, 537
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 2 cut(s) 504, 931
SinI GGWCC 2 cut(s) 202, 1286
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
SpeI ACTAGT 1 cut(s) 496
Sse9I AATT 5 cut(s) 243, 312, 685, 1057, 1217
SsiI CCGC 2 cut(s) 253, 1284
SspI AATATT 2 cut(s) 188, 660
SspMI CTAG 4 cut(s) 497, 668, 681, 1281
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 2 cut(s) 712, 1101
TaaI ACNGT 3 cut(s) 279, 654, 888
TaiI ACGT 1 cut(s) 843
TasI AATT 5 cut(s) 243, 312, 685, 1057, 1217
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 2 cut(s) 410, 928
Tru1I TTAA 1 cut(s) 1121
Tru9I TTAA 1 cut(s) 1121
TscAI CASTG 2 cut(s) 142, 388
TseFI GTSAC 2 cut(s) 300, 1142
TseI GCWGC 5 cut(s) 19, 443, 464, 467, 1004
Tsp45I GTSAC 2 cut(s) 300, 1142
TspDTI ATGAA 4 cut(s) 286, 708, 1016, 1070
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 142, 388
VpaK11BI GGWCC 2 cut(s) 202, 1286
XapI RAATTY 2 cut(s) 1057, 1217
XceI RCATGY 2 cut(s) 180, 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 719
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 4 cut(s) 497, 668, 681, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.