Rorug05G0320600

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
38038824 .. 38042726
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0320600.1

Sequence Viewer

Length: 1281 bp
ATGAACTTGAACAAATCCAAGCTTCAGGAGATGTGCCAAGCCAGAGGTTGGACCTTCCCCAAGTACAGCAGCAACCAGCAAGGCCCACCTCACCGACCTCGCTTCTCAGCCTCTGTGCTCGTCCATGGCTTCACCTTCAACACTAAAACTATGCTTACCTCTAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGCTTACTTCGATGAAGACCCACAACCACCCCAGCCCAAACGCACCAAGTGTTTCTCTTTCCCGGCTCAGCCGTCTCATATAGCTTCACTTCCTCCACCTTCATCACCAGGTTTGCTGTATCACACGTACAAGGAGAATGAGATATGGAATGAGACAACTAGCACAGAGGGAAAGAAGGACACTTACGAACTGGAGCTAATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACTTTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGCCGCAAGGAGCTACAGCATATGAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTCAATTGAAAGACCAGTTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGAAGAATATTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGACTTAATTGAGGGACTGAAAAATCATTCAAAAATATATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGAAATTATTGATGAAGAAGATAAAAAGTTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCCCTTAAGAACACGAAGCGGCGAAGAAACTAG

Protein Analysis

426

Amino Acids

49.73

Weight (kDa)

8.01

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 5 - 69 2.3e-11 Double-stranded RNA binding motif
XH PF03469 289 - 420 3.9e-50 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000752)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis pycom11g11270
rosa_chinensis RchiOBHm_Chr5g0059091
rosa_laevigata RLG00000035279
rosa_multiflora Rmu_sc0002983.1_g000039
rosa_roxburghii Rroxscaffold_1G00021320
rosa_rugosa Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana Rw5G036320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 48
AccI GTMKAC 1 cut(s) 1104
AciI CCGC 2 cut(s) 511, 1267
AcsI RAATTY 3 cut(s) 752, 1075, 1183
AcuI CTGAAG 2 cut(s) 8, 1256
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 2 cut(s) 65, 329
AfeI AGCGCT 1 cut(s) 579
AfiI CCNNNNNNNGG 3 cut(s) 48, 1009, 1158
AflII CTTAAG 1 cut(s) 1253
AflIII ACRYGT 1 cut(s) 324
AjnI CCWGG 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
Alw21I GWGCWC 3 cut(s) 120, 507, 965
Alw26I GTCTC 3 cut(s) 279, 347, 1019
AlwNI CAGNNNCTG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 579
AoxI GGCC 4 cut(s) 82, 195, 681, 807
ApaI GGGCCC 1 cut(s) 811
ApeKI GCWGC 4 cut(s) 69, 185, 799, 905
ApoI RAATTY 3 cut(s) 752, 1075, 1183
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 5 cut(s) 51, 83, 682, 807, 808
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 5 cut(s) 83, 124, 297, 887, 1126
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 811
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
BbsI GAAGAC 3 cut(s) 222, 872, 1088
Bbv12I GWGCWC 3 cut(s) 120, 507, 965
BbvI GCAGC 4 cut(s) 81, 172, 786, 917
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 309
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 279, 347, 1019
BfaI CTAG 2 cut(s) 360, 1279
BfmI CTRYAG 2 cut(s) 521, 800
BfoI RGCGCY 1 cut(s) 581
BfrI CTTAAG 1 cut(s) 1253
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 6 cut(s) 70, 186, 511, 800, 906, 1268
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 6 cut(s) 71, 187, 512, 801, 907, 1269
Bme1390I CCNGG 2 cut(s) 263, 309
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 5 cut(s) 51, 83, 682, 807, 808
BmiI GGNNCC 3 cut(s) 808, 809, 1001
BmrFI CCNGG 2 cut(s) 263, 309
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 3 cut(s) 222, 872, 1088
BplI GAGNNNNNCTC 2 cut(s) 947, 979
BpmI CTGGAG 2 cut(s) 413, 521
Bpu1102I GCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 124, 198
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 1009, 1158
Bse1I ACTGG 3 cut(s) 396, 643, 1152
Bse3DI GCAATG 1 cut(s) 1247
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 124, 198
BseGI GGATG 2 cut(s) 1027, 1102
BseLI CCNNNNNNNGG 3 cut(s) 48, 1009, 1158
BseMI GCAATG 1 cut(s) 1247
BseMII CTCAG 4 cut(s) 120, 281, 633, 1077
BseNI ACTGG 3 cut(s) 396, 643, 1152
BseRI GAGGAG 1 cut(s) 796
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 4 cut(s) 81, 172, 786, 917
BseYI CCCAGC 3 cut(s) 188, 231, 1090
BshFI GGCC 4 cut(s) 84, 197, 683, 809
BsiHKAI GWGCWC 3 cut(s) 120, 507, 965
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 3 cut(s) 48, 1009, 1158
BsmAI GTCTC 3 cut(s) 279, 347, 1019
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 4 cut(s) 84, 197, 683, 809
Bsp120I GGGCCC 1 cut(s) 807
Bsp1286I GDGCHC 4 cut(s) 120, 507, 811, 965
Bsp143I GATC 2 cut(s) 742, 877
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 2 cut(s) 511, 1267
BspANI GGCC 4 cut(s) 84, 197, 683, 809
BspCNI CTCAG 4 cut(s) 119, 280, 632, 1078
BspLI GGNNCC 3 cut(s) 808, 809, 1001
BspMAI CTGCAG 1 cut(s) 804
BspTI CTTAAG 1 cut(s) 1253
BsrDI GCAATG 1 cut(s) 1247
BsrI ACTGG 3 cut(s) 396, 643, 1152
BssECI CCNNGG 2 cut(s) 124, 198
BssMI GATC 2 cut(s) 742, 877
BssNAI GTATAC 1 cut(s) 1105
BssT1I CCWWGG 2 cut(s) 124, 198
Bst1107I GTATAC 1 cut(s) 1105
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 405
BstAFI CTTAAG 1 cut(s) 1253
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 5 cut(s) 106, 162, 267, 619, 1086
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 1027, 1102
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 2 cut(s) 745, 880
BstMAI GTCTC 3 cut(s) 279, 347, 1019
BstMBI GATC 2 cut(s) 742, 877
BstMWI GCNNNNNNNGC 2 cut(s) 194, 659
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 261, 307
BstSFI CTRYAG 2 cut(s) 521, 800
BstSLI GKGCMC 1 cut(s) 811
BstV1I GCAGC 4 cut(s) 81, 172, 786, 917
BstV2I GAAGAC 3 cut(s) 222, 872, 1088
BstZ17I GTATAC 1 cut(s) 1105
BsuRI GGCC 4 cut(s) 84, 197, 683, 809
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 1027, 1102
BtsI GCAGTG 3 cut(s) 505, 669, 957
BtsIMutI CAGTG 5 cut(s) 505, 669, 764, 957, 1159
Cac8I GCNNGC 1 cut(s) 582
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 5 cut(s) 51, 83, 682, 807, 808
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 2 cut(s) 64, 328
CviAII CATG 1 cut(s) 125
CviQI GTAC 2 cut(s) 64, 328
DdeI CTNAG 5 cut(s) 106, 162, 267, 619, 1086
DpnI GATC 2 cut(s) 744, 879
DpnII GATC 2 cut(s) 742, 877
DraI TTTAAA 1 cut(s) 1189
DraIII CACNNNGTG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 124, 198
Eco24I GRGCYC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 51
Eco47III AGCGCT 1 cut(s) 579
Eco57I CTGAAG 2 cut(s) 8, 1256
EcoO109I RGGNCCY 1 cut(s) 807
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 124, 198
EcoT38I GRGCYC 1 cut(s) 811
ErhI CCWWGG 2 cut(s) 124, 198
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 1 cut(s) 128
FaqI GGGAC 1 cut(s) 843
FatI CATG 1 cut(s) 124
FauNDI CATATG 1 cut(s) 528
FblI GTMKAC 1 cut(s) 1104
Fnu4HI GCNGC 6 cut(s) 70, 186, 511, 800, 906, 1268
FokI GGATG 2 cut(s) 1034, 1109
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 6 cut(s) 70, 186, 511, 800, 906, 1268
FspBI CTAG 2 cut(s) 360, 1279
GlaI GCGC 1 cut(s) 579
GluI GCNGC 6 cut(s) 70, 186, 511, 800, 906, 1268
GsaI CCCAGC 3 cut(s) 192, 235, 1094
GsuI CTGGAG 2 cut(s) 413, 521
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 4 cut(s) 84, 197, 683, 809
HapII CCGG 1 cut(s) 263
HhaI GCGC 1 cut(s) 580
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HindIII AAGCTT 2 cut(s) 20, 611
HinfI GANTC 3 cut(s) 472, 545, 989
HpaII CCGG 1 cut(s) 263
HphI GGTGA 5 cut(s) 83, 124, 297, 887, 1126
Hpy166II GTNNAC 1 cut(s) 1105
Hpy188I TCNGA 6 cut(s) 477, 550, 573, 622, 751, 1236
Hpy188III TCNNGA 2 cut(s) 26, 881
Hpy8I GTNNAC 1 cut(s) 1105
HpyAV CCTTC 7 cut(s) 64, 145, 309, 370, 718, 883, 1195
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 4 cut(s) 764, 802, 905, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 659
HpyF3I CTNAG 5 cut(s) 106, 162, 267, 619, 1086
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 2 cut(s) 742, 877
LmnI GCTCC 6 cut(s) 394, 502, 517, 727, 733, 783
Lsp1109I GCAGC 4 cut(s) 81, 172, 786, 917
LweI GCATC 1 cut(s) 448
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 2 cut(s) 360, 1279
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 1114
MalI GATC 2 cut(s) 744, 879
MboI GATC 2 cut(s) 742, 877
MfeI CAATTG 1 cut(s) 632
MhlI GDGCHC 4 cut(s) 120, 507, 811, 965
MmeI TCCRAC 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 7 cut(s) 696, 716, 821, 1127, 1188, 1212, 1254
MslI CAYNNNNRTG 1 cut(s) 531
MspCI CTTAAG 1 cut(s) 1253
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 263, 309
MunI CAATTG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 194, 659
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 124
NdeI CATATG 1 cut(s) 528
NdeII GATC 2 cut(s) 742, 877
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 3 cut(s) 808, 809, 1001
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 1114
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 472, 545, 989
PflMI CCANNNNNTGG 1 cut(s) 48
PkrI GCNGC 6 cut(s) 71, 187, 512, 801, 907, 1269
Ppu21I YACGTR 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 3 cut(s) 188, 231, 1090
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 808, 809, 1001
PspOMI GGGCCC 1 cut(s) 807
PspPI GGNCC 5 cut(s) 51, 83, 682, 807, 808
PstI CTGCAG 1 cut(s) 804
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 65, 329
RsaNI GTAC 2 cut(s) 64, 328
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 7 cut(s) 696, 716, 821, 1127, 1188, 1212, 1254
SatI GCNGC 6 cut(s) 70, 186, 511, 800, 906, 1268
Sau3AI GATC 2 cut(s) 742, 877
Sau96I GGNCC 5 cut(s) 51, 83, 682, 807, 808
ScrFI CCNGG 2 cut(s) 263, 309
SduI GDGCHC 4 cut(s) 120, 507, 811, 965
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 2 cut(s) 521, 800
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 1253
SmoI CTYRAG 1 cut(s) 1253
SsiI CCGC 2 cut(s) 511, 1267
SspI AATATT 1 cut(s) 694
SspMI CTAG 2 cut(s) 360, 1279
StyD4I CCNGG 2 cut(s) 261, 307
StyI CCWWGG 2 cut(s) 124, 198
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 210
TatI WGTACW 1 cut(s) 63
TauI GCSGC 2 cut(s) 513, 1270
TfiI GAWTC 3 cut(s) 472, 545, 989
Tru1I TTAA 7 cut(s) 696, 716, 821, 1127, 1188, 1212, 1254
Tru9I TTAA 7 cut(s) 696, 716, 821, 1127, 1188, 1212, 1254
TscAI CASTG 5 cut(s) 512, 669, 771, 957, 1159
TseFI GTSAC 1 cut(s) 1114
TseI GCWGC 4 cut(s) 69, 185, 799, 905
Tsp45I GTSAC 1 cut(s) 1114
TspDTI ATGAA 8 cut(s) 17, 228, 291, 500, 545, 1068, 1113, 1155
TspRI CASTG 5 cut(s) 512, 669, 771, 957, 1159
Van91I CCANNNNNTGG 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 1253
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 3 cut(s) 752, 1075, 1183
XmiI GTMKAC 1 cut(s) 1104
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 2 cut(s) 360, 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.