Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000752

Physical Location & Seq

Genomic Coordinates Forward (+)

38018468 .. 38018800

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0320500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAGCTCAGCATCGATAATTGTTTCCTCATTTCTATTCTCCTCTTTAGTATTTTACTAATGAATATCGAAGCAAAGCCCACTGTACAGGAAGAGAAAGATGATCATCAAGAAGTCGCCATTGATGATTCTCTGAACTCTCCTGACAATGAAACTGAATCAAACTCCTGCTTCTTACACAGAAATGATCGCTCTCTGAGGCAAAAGATGAGAACACATACGGTGCGGTTGACCTGTAACAAGTTCCCCAGGATATGTTATACTAAGGGAAGCTCAGGACCTCATTGCTGCAAGAAGAAGTGTGTTAATGTTTTAACAGATCGACAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.63

Weight (kDa)

8.19

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	78 - 109	4.1e-07	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000752)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica	MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica	Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis	pycom11g11270
rosa_chinensis	RchiOBHm_Chr5g0059091
rosa_laevigata	RLG00000035279
rosa_multiflora	Rmu_sc0002983.1_g000039
rosa_roxburghii	Rroxscaffold_1G00021320
rosa_rugosa	Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha	Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana	Rw5G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	3 cut(s)	7, 273, 329
AluI	AGCT	3 cut(s)	7, 273, 329
ApeKI	GCWGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	250
BclI	TGATCA	1 cut(s)	103
BisI	GCNGC	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	274
Bpu1102I	GCTNAGC	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	250
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	248
BseJI	GATNNNNATC	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	22, 188, 288
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	103, 187, 319
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	226
BspCNI	CTCAG	3 cut(s)	21, 189, 287
BspDI	ATCGAT	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	283
BsrGI	TGTACA	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	3 cut(s)	103, 187, 319
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	85, 223
Bst6I	CTCTTC	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	85
BstDEI	CTNAG	4 cut(s)	8, 197, 264, 274
BstKTI	GATC	3 cut(s)	106, 190, 322
BstMBI	GATC	3 cut(s)	103, 187, 319
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	86
CviJI	RGCY	4 cut(s)	7, 79, 273, 329
CviKI_1	RGCY	4 cut(s)	7, 79, 273, 329
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	4 cut(s)	8, 197, 264, 274
DpnI	GATC	3 cut(s)	105, 189, 321
DpnII	GATC	3 cut(s)	103, 187, 319
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	248
FaiI	YATR	3 cut(s)	219, 256, 261
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	2 cut(s)	128, 158
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	135, 198
Hpy188III	TCNNGA	3 cut(s)	110, 143, 276
Hpy8I	GTNNAC	1 cut(s)	231
HpyCH4III	ACNGT	2 cut(s)	85, 223
HpyCH4V	TGCA	1 cut(s)	291
HpyF3I	CTNAG	4 cut(s)	8, 197, 264, 274
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	103, 187, 319
LpnPI	CCDG	7 cut(s)	74, 156, 181, 235, 247, 261, 262
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	105, 189, 321
MboI	GATC	3 cut(s)	103, 187, 319
MboII	GAAGA	2 cut(s)	104, 307
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	4 cut(s)	38, 53, 192, 291
MseI	TTAA	3 cut(s)	306, 314, 331
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	103, 187, 319
PfeI	GAWTC	2 cut(s)	128, 158
PkrI	GCNGC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	278
PspPPI	RGGWCCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	306, 314, 331
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	3 cut(s)	103, 187, 319
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	5 cut(s)	9, 236, 275, 283, 331
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	85, 223
TaqI	TCGA	3 cut(s)	15, 69, 322
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	128, 158
Tru1I	TTAA	3 cut(s)	306, 314, 331
Tru9I	TTAA	3 cut(s)	306, 314, 331
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	3 cut(s)	17, 77, 165
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.