Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000752

Physical Location & Seq

Genomic Coordinates Forward (+)

65710506 .. 65714039

Gene Structure 3534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1190 bp

ATGCGCTTGTTCTGGTGGCAGCAGTTGCCTCTGCTTATACTCATTCAACTTTTACAACCCAGCAGAACAAGTTACAAAATATACGCTGAAGCTTTACTGACCTTCAAGAGCAGAGTTGGAAGTCCTGAACTCTCCAGTGGTCAGATTGGAAATTATCCGTGTCTAAAACAATGGACATTTCTCAAATATTATAAACTGAAGGACCCTTGTGTTCCTTTCAGCACATTTCCTGGTATCTCTTCAATTCCCCTGCAGTCTAACAGAGTCAACTTAGCACCGTTTGCTCCAAGACTTTTTATGTCGCAATCTTCAATTGATGTACAAAAAGAGCTCCATAAACCAAGAAACAGAAGGATAGCAGGCATAGTTGATGGGGACAGCAGTGTTCCAACATTCACACCTGTACAAGAAGCTGGTGATAAAAAACCGAAACAGAAAGTTGCAGCCATCATTGGTGGAGTTGCTGCTGCTTTTCTTGTGGTTATTGTAGTGATACTAGTTTACATCTACTTGATGCGTGTCAAAAGAGTCGTTAGGCAAACATCTGATACATCATCTTCTACACCATCCCCCCATGTTGAATGGACAAGAGGGGACACATCCCCCTACGCCGTTGCTTTATCTCCATATGATACACACAACTTGAGGCAACTGTCAATATTGGAACTAGAGCAAGCTACTAGCAATTTCAATGAAAATAATATCATAGGCCAAGGTAGATTTGGTTTGGTCTACAAGGGATTGCTCCAAGATGGATCTATTGTGGCTATCAAGAGACGCCTACATGCTCCAACTCAGTATTTTTTTCAAGAGGTGAAGCACATAGCTCGTGTGAACCACGTGCATATTCTCAGGCTCATTGGTTATTGTCAAGATACAAGTCAACAGTTACTTGTCTATGACTATCTTCCAAATGGAAATGTTGGGAATCATCTATATGATGCTGAAGGTTTGCCTATTGGAAAGCTGGGTTTATGGCAAAGGTTATCAGTTGCTTTGGGAGCAGCCAAAGGACTTGCACATCTTCATAGTTTGGTACCTCCTCTCCTGCACATGAATTTCAGGACAAGCAATGTTCTTTTGGATGATAACTTTACACCCAAGGTGTCTGATTATGGATTAACCAGACTGCTAAATAAGGGTCACCATGCTGGATCATCTTCAGCCATAGACTGCTTTCTTGACCCAGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

396

Amino Acids

44.26

Weight (kDa)

9.57

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	231 - 383	2.4e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	233 - 381	1.1e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000752)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300 FvH4_3g32300
malus_domestica	MD03G1117600.v1.1 MD11G1135900.v1.1
prunus_persica	Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1 Prupe.6G101300_v2.0.a1
pyrus_communis	pycom11g11270
rosa_chinensis	RchiOBHm_Chr5g0059091
rosa_laevigata	RLG00000035279
rosa_multiflora	Rmu_sc0002983.1_g000039
rosa_roxburghii	Rroxscaffold_1G00021320
rosa_rugosa	Rorug05G0320400 Rorug05G0320500 Rorug05G0320600 Rorug05G0320700 Rorug05G0320800 Rorug05G0320900 Rorug05G0321000 Rorug05G0321000 Rorug05G0321100
rosa_samantha	Rh5AG385800 Rh5BG397300 Rh5CG421000 Rh5DG413400
rosa_wichuraiana	Rw5G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	1036
AccB1I	GGYRCC	1 cut(s)	1036
AccI	GTMKAC	1 cut(s)	732
AclWI	GGATC	2 cut(s)	763, 1162
AcsI	RAATTY	1 cut(s)	1057
AcuI	CTGAAG	4 cut(s)	108, 218, 966, 1146
AcvI	CACGTG	1 cut(s)	841
AcyI	GRCGYC	1 cut(s)	778
AfaI	GTAC	3 cut(s)	321, 405, 1038
AgsI	TTSAA	7 cut(s)	47, 106, 243, 312, 581, 691, 809
AhlI	ACTAGT	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	6 cut(s)	92, 331, 413, 677, 827, 967
AluI	AGCT	6 cut(s)	92, 331, 413, 677, 827, 967
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	2 cut(s)	763, 1162
AoxI	GGCC	1 cut(s)	709
ApeKI	GCWGC	5 cut(s)	19, 443, 464, 467, 1004
ApoI	RAATTY	1 cut(s)	1057
Asp718I	GGTACC	1 cut(s)	1036
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	428, 826, 1136
AvaII	GGWCC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	1036
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	828
BbrPI	CACGTG	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	5 cut(s)	31, 451, 454, 455, 1016
BccI	CCATC	4 cut(s)	365, 455, 574, 746
BceAI	ACGGC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	769
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	3 cut(s)	497, 668, 681
BfmI	CTRYAG	1 cut(s)	251
BisI	GCNGC	5 cut(s)	20, 444, 465, 468, 1005
BlsI	GCNGC	5 cut(s)	21, 445, 466, 469, 1006
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	204, 1038
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	504, 931
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	664
BsaAI	YACGTR	1 cut(s)	841
BsaHI	GRCGYC	1 cut(s)	778
BsaJI	CCNNGG	2 cut(s)	712, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	1029, 1059
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	1078
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	712, 1101
BseGI	GGATG	3 cut(s)	566, 599, 1090
BseMI	GCAATG	1 cut(s)	1078
BseMII	CTCAG	2 cut(s)	809, 865
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	1032
BseXI	GCAGC	5 cut(s)	31, 451, 454, 455, 1016
BseYI	CCCAGC	2 cut(s)	59, 967
BsgI	GTGCAG	1 cut(s)	1034
BshFI	GGCC	1 cut(s)	711
BshNI	GGYRCC	1 cut(s)	1036
BsiHKAI	GWGCWC	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	389, 608
BsmAI	GTCTC	1 cut(s)	769
BsmBI	CGTCTC	1 cut(s)	769
BsmFI	GGGAC	2 cut(s)	389, 608
BsnI	GGCC	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp1407I	TGTACA	2 cut(s)	319, 403
Bsp143I	GATC	2 cut(s)	755, 1154
BspANI	GGCC	1 cut(s)	711
BspCNI	CTCAG	2 cut(s)	808, 864
BspLI	GGNNCC	2 cut(s)	204, 1038
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	2 cut(s)	763, 1162
BspT107I	GGYRCC	1 cut(s)	1036
BsrDI	GCAATG	1 cut(s)	1078
BsrGI	TGTACA	2 cut(s)	319, 403
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	712, 1101
BssMI	GATC	2 cut(s)	755, 1154
BssNI	GRCGYC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	2 cut(s)	712, 1101
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	279, 654, 888
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	778
BstAPI	GCANNNNNTGC	2 cut(s)	25, 281
BstAUI	TGTACA	2 cut(s)	319, 403
BstBAI	YACGTR	1 cut(s)	841
BstC8I	GCNNGC	2 cut(s)	361, 675
BstDEI	CTNAG	3 cut(s)	271, 795, 851
BstEII	GGTNACC	1 cut(s)	1142
BstF5I	GGATG	3 cut(s)	566, 599, 1090
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	758, 1157
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	2 cut(s)	755, 1154
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 281, 1001
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	1142
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	5 cut(s)	31, 451, 454, 455, 1016
BstX2I	RGATCY	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	755
BsuRI	GGCC	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	566, 599, 1090
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	142, 388
Cac8I	GCNNGC	2 cut(s)	361, 675
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	3 cut(s)	320, 404, 1037
CviAII	CATG	4 cut(s)	575, 785, 1054, 1148
CviQI	GTAC	3 cut(s)	320, 404, 1037
DdeI	CTNAG	3 cut(s)	271, 795, 851
DpnI	GATC	2 cut(s)	757, 1156
DpnII	GATC	2 cut(s)	755, 1154
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	712, 1101
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	4 cut(s)	108, 218, 966, 1146
Eco72I	CACGTG	1 cut(s)	841
Eco91I	GGTNACC	1 cut(s)	1142
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	202
EcoO65I	GGTNACC	1 cut(s)	1142
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	712, 1101
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	712, 1101
Esp3I	CGTCTC	1 cut(s)	769
FaeI	CATG	4 cut(s)	578, 788, 1057, 1151
FaqI	GGGAC	2 cut(s)	389, 608
FatI	CATG	4 cut(s)	574, 784, 1053, 1147
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	5 cut(s)	20, 444, 465, 468, 1005
FokI	GGATG	3 cut(s)	553, 586, 1097
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	5 cut(s)	20, 444, 465, 468, 1005
FspBI	CTAG	3 cut(s)	497, 668, 681
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	5 cut(s)	20, 444, 465, 468, 1005
GsaI	CCCAGC	2 cut(s)	63, 971
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	711
HgaI	GACGC	1 cut(s)	786
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	778
Hin1II	CATG	4 cut(s)	578, 788, 1057, 1151
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	268, 884
HindII	GTYRAC	2 cut(s)	268, 884
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	264, 528, 928
HphI	GGTGA	3 cut(s)	428, 826, 1136
Hpy166II	GTNNAC	5 cut(s)	268, 502, 733, 835, 884
Hpy188I	TCNGA	3 cut(s)	144, 547, 1111
Hpy188III	TCNNGA	7 cut(s)	106, 125, 772, 809, 872, 1063, 1181
Hpy8I	GTNNAC	5 cut(s)	268, 502, 733, 835, 884
HpyAV	CCTTC	4 cut(s)	112, 193, 345, 941
HpyCH4III	ACNGT	3 cut(s)	279, 654, 888
HpyCH4IV	ACGT	1 cut(s)	840
HpyCH4V	TGCA	5 cut(s)	253, 443, 844, 1019, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 281, 1001
HpyF3I	CTNAG	3 cut(s)	271, 795, 851
HpySE526I	ACGT	1 cut(s)	840
Hsp92I	GRCGYC	1 cut(s)	778
Hsp92II	CATG	4 cut(s)	578, 788, 1057, 1151
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	1040
Kzo9I	GATC	2 cut(s)	755, 1154
LmnI	GCTCC	5 cut(s)	289, 336, 750, 793, 1001
Lsp1109I	GCAGC	5 cut(s)	31, 451, 454, 455, 1016
LweI	GCATC	2 cut(s)	504, 931
MaeI	CTAG	3 cut(s)	497, 668, 681
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	3 cut(s)	71, 888, 1142
MalI	GATC	2 cut(s)	757, 1156
MboI	GATC	2 cut(s)	755, 1154
MboII	GAAGA	6 cut(s)	231, 300, 549, 899, 1016, 1152
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	5 cut(s)	151, 243, 312, 685, 1057
MlyI	GAGTC	2 cut(s)	273, 537
MmeI	TCCRAC	3 cut(s)	97, 413, 815
MnlI	CCTC	6 cut(s)	39, 584, 639, 805, 1050, 1053
MseI	TTAA	1 cut(s)	1121
MslI	CAYNNNNRTG	1 cut(s)	936
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	25, 281, 1001
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	2 cut(s)	755, 1154
NlaIII	CATG	4 cut(s)	578, 788, 1057, 1151
NlaIV	GGNNCC	2 cut(s)	204, 1038
NmuCI	GTSAC	1 cut(s)	1142
NspI	RCATGY	1 cut(s)	788
PfeI	GAWTC	1 cut(s)	928
PkrI	GCNGC	5 cut(s)	21, 445, 466, 469, 1006
PleI	GAGTC	2 cut(s)	272, 536
PmaCI	CACGTG	1 cut(s)	841
PmlI	CACGTG	1 cut(s)	841
PpsI	GAGTC	2 cut(s)	272, 536
Ppu21I	YACGTR	1 cut(s)	841
PpuMI	RGGWCCY	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	841
PspEI	GGTNACC	1 cut(s)	1142
PspFI	CCCAGC	2 cut(s)	59, 967
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	204, 1038
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	755
RsaI	GTAC	3 cut(s)	321, 405, 1038
RsaNI	GTAC	3 cut(s)	320, 404, 1037
RseI	CAYNNNNRTG	1 cut(s)	936
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	1121
SatI	GCNGC	5 cut(s)	20, 444, 465, 468, 1005
Sau3AI	GATC	2 cut(s)	755, 1154
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	273, 537
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	504, 931
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
SpeI	ACTAGT	1 cut(s)	496
Sse9I	AATT	5 cut(s)	151, 243, 312, 685, 1057
SspI	AATATT	2 cut(s)	188, 660
SspMI	CTAG	3 cut(s)	497, 668, 681
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	712, 1101
TaaI	ACNGT	3 cut(s)	279, 654, 888
TaiI	ACGT	1 cut(s)	843
TasI	AATT	5 cut(s)	151, 243, 312, 685, 1057
TatI	WGTACW	2 cut(s)	319, 403
TfiI	GAWTC	1 cut(s)	928
Tru1I	TTAA	1 cut(s)	1121
Tru9I	TTAA	1 cut(s)	1121
TscAI	CASTG	2 cut(s)	142, 388
TseFI	GTSAC	1 cut(s)	1142
TseI	GCWGC	5 cut(s)	19, 443, 464, 467, 1004
Tsp45I	GTSAC	1 cut(s)	1142
TspDTI	ATGAA	3 cut(s)	708, 1016, 1070
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	142, 388
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	1057
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	3 cut(s)	497, 668, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.