Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008595

Physical Location & Seq

Genomic Coordinates Reverse (-)

36769015 .. 36770041

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGAAGCCGGCCGGCGCCAAGTGCTGGAGTCCGTCTACTCCGTGATCGCGCTCTTCTTCATTCTCGTCGCCTGCGTCGAGCTCGCGACGCCGCGACCGTCGTCGACGTCCGCCGCCCGATCCAATACGACATGTCGGGAGCTCGGTTCGGATCTCGCCTCGCCAATCTGAATCACCACGCCGGCTCCTTGCACTCCCCGCCCGGCTCGATCTCTCTCGCACCGTCCTCATCATCCCCTTGCGTGAACTCAACATCACCTTCGTCGGAGAATATATTACGCGAAGCGCCTTTGGGAGGCTTGCGATTTTGCTTCCCCGGATATGATGATATTGAGGTTGTGTTGGCGATGTCAAGAGGAATGATGCCATTGGGCAGCTGCCTCTGCGACTTTGGAGGACCTTATAACTACAATGGAACTAATAAGTGGCTCCGGAGCTTTGACCAACGCCTGCGTGAAAGTGTTGACTATGCTATTTGCTTGAATAGTATTGGCTCATGGGACAAAGAATTGTGGCGAGAAGAGTTGGGCATTACGGTTGGTCTGAAGCACAAGAAAATAAATATTTCAAATCCTCGAGTAGCTTGGGAACATGAACAGTTTTCACGGCCGAGAGTTACTGCCGCCACCCTTTCCGAACTCTCTGTTGCTCCTGAACCGTTAGAAAGCACCGGAAGTCCGCTTGATGGCAGGCAATTTGTTAATGAAACTGCAATCATTAAAAGTGTCAAGTTAGTGGCTAAGAGCCTTGCGAGGCATATCTATGGTCACAAAGGAAAGAATATTCAAATCTTTGCAGAAAACAGCGAGTTTGGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0007275 GO:0007399 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0031984 GO:0032501 GO:0032502 GO:0032925 GO:0032926 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048483 GO:0048484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0098827 GO:1900107 GO:1900108 GO:1900145 GO:1900146 GO:1900175 GO:1900176 GO:1903506 GO:2000026 GO:2000112 GO:2000380 GO:2000381 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

273

Amino Acids

30.06

Weight (kDa)

9.53

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44330
fragaria_vesca	FvH4_3g25670 FvH4_3g25670 FvH4_3g25670 FvH4_3g25670
malus_domestica	MD03G1149800.v1.1 MD11G1168600.v1.1
prunus_persica	Prupe.6G135800_v2.0.a1
pyrus_communis	pycom11g14130
rosa_chinensis	RchiOBHm_Chr5g0045881
rosa_laevigata	RLG00000034394
rosa_multiflora	Rmu_sc0001212.1_g000004
rosa_roxburghii	Rroxscaffold_1G00028740 Rroxscaffold_1G00035230 Rroxscaffold_2G00117520 Rroxscaffold_2G00117530
rosa_rugosa	Rorug05G0226200 Rorug05G0226300
rosa_samantha	Rh5AG307700 Rh5BG316000 Rh5CG342200 Rh5DG326300
rosa_wichuraiana	Rw5G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AatII	GACGTC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	37, 105
AccII	CGCG	4 cut(s)	51, 87, 95, 282
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	6 cut(s)	93, 112, 115, 200, 624, 680
AclWI	GGATC	2 cut(s)	115, 160
AcoI	YGGCCR	2 cut(s)	11, 608
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	3 cut(s)	17, 90, 108
AfiI	CCNNNNNNNGG	3 cut(s)	26, 296, 686
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	484, 570, 788
AluBI	AGCT	5 cut(s)	83, 143, 378, 438, 584
AluI	AGCT	5 cut(s)	83, 143, 378, 438, 584
Alw21I	GWGCWC	2 cut(s)	85, 145
AlwI	GGATC	2 cut(s)	115, 160
Ama87I	CYCGRG	1 cut(s)	576
Aor13HI	TCCGGA	1 cut(s)	432
AoxI	GGCC	2 cut(s)	11, 608
ApeKI	GCWGC	2 cut(s)	375, 378
AspLEI	GCGC	3 cut(s)	19, 53, 289
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	204, 318
AsuHPI	GGTGA	2 cut(s)	167, 249
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	85, 145
Bbv12I	GWGCWC	2 cut(s)	85, 145
BbvI	GCAGC	2 cut(s)	365, 387
BccI	CCATC	1 cut(s)	680
BceAI	ACGGC	1 cut(s)	623
BcnI	CCSGG	2 cut(s)	204, 318
BfoI	RGCGCY	2 cut(s)	20, 290
BisI	GCNGC	5 cut(s)	93, 115, 376, 379, 624
BlsI	GCNGC	5 cut(s)	94, 116, 377, 380, 625
Bme1390I	CCNGG	2 cut(s)	204, 318
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	3 cut(s)	18, 187, 431
BmrFI	CCNGG	2 cut(s)	204, 318
BmsI	GCATC	1 cut(s)	354
BoxI	GACNNNNGTC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	204, 318
BsaHI	GRCGYC	3 cut(s)	17, 90, 108
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	2 cut(s)	432, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 296, 686
Bse118I	RCCGGY	3 cut(s)	9, 13, 182
BseAI	TCCGGA	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	26, 296, 686
BseX3I	CGGCCG	2 cut(s)	11, 608
BseXI	GCAGC	2 cut(s)	365, 387
Bsh1236I	CGCG	4 cut(s)	51, 87, 95, 282
Bsh1285I	CGRYCG	3 cut(s)	14, 99, 611
BshFI	GGCC	2 cut(s)	13, 610
BshNI	GGYRCC	1 cut(s)	16
BsiEI	CGRYCG	3 cut(s)	14, 99, 611
BsiHKAI	GWGCWC	2 cut(s)	85, 145
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	7 cut(s)	10, 14, 183, 204, 318, 433, 672
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	3 cut(s)	26, 296, 686
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	13, 610
BsoBI	CYCGRG	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	85, 145
Bsp13I	TCCGGA	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	46, 120, 152, 210
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	6 cut(s)	93, 112, 115, 200, 624, 680
BspANI	GGCC	2 cut(s)	13, 610
BspEI	TCCGGA	1 cut(s)	432
BspFNI	CGCG	4 cut(s)	51, 87, 95, 282
BspLI	GGNNCC	3 cut(s)	18, 187, 431
BspPI	GGATC	2 cut(s)	115, 160
BspQI	GCTCTTC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	9, 13, 182
BssAI	RCCGGY	3 cut(s)	9, 13, 182
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	4 cut(s)	46, 120, 152, 210
BssNI	GRCGYC	3 cut(s)	17, 90, 108
Bst4CI	ACNGT	5 cut(s)	100, 225, 538, 600, 660
Bst6I	CTCTTC	2 cut(s)	60, 516
BstACI	GRCGYC	3 cut(s)	17, 90, 108
BstC8I	GCNNGC	8 cut(s)	11, 15, 74, 85, 184, 302, 452, 692
BstDEI	CTNAG	1 cut(s)	741
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	4 cut(s)	51, 87, 95, 282
BstH2I	RGCGCY	2 cut(s)	20, 290
BstHHI	GCGC	3 cut(s)	19, 53, 289
BstKTI	GATC	4 cut(s)	49, 123, 155, 213
BstMBI	GATC	4 cut(s)	46, 120, 152, 210
BstMCI	CGRYCG	3 cut(s)	14, 99, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 89, 199, 384, 813
BstNSI	RCATGY	1 cut(s)	136
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	202, 316
BstUI	CGCG	4 cut(s)	51, 87, 95, 282
BstV1I	GCAGC	2 cut(s)	365, 387
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BstZI	CGGCCG	2 cut(s)	11, 608
BsuRI	GGCC	2 cut(s)	13, 610
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	233
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	8 cut(s)	11, 15, 74, 85, 184, 302, 452, 692
CfoI	GCGC	3 cut(s)	19, 53, 289
Cfr10I	RCCGGY	3 cut(s)	9, 13, 182
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	2 cut(s)	65, 98
CviAII	CATG	3 cut(s)	133, 498, 593
DdeI	CTNAG	1 cut(s)	741
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	4 cut(s)	48, 122, 154, 212
DpnII	GATC	4 cut(s)	46, 120, 152, 210
EaeI	YGGCCR	2 cut(s)	11, 608
EagI	CGGCCG	2 cut(s)	11, 608
Eam1104I	CTCTTC	2 cut(s)	60, 516
EarI	CTCTTC	2 cut(s)	60, 516
EciI	GGCGGA	1 cut(s)	101
Ecl136II	GAGCTC	2 cut(s)	83, 143
EclXI	CGGCCG	2 cut(s)	11, 608
Eco24I	GRGCYC	2 cut(s)	85, 145
Eco47I	GGWCC	1 cut(s)	398
Eco52I	CGGCCG	2 cut(s)	11, 608
Eco53kI	GAGCTC	2 cut(s)	83, 143
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	576
EcoICRI	GAGCTC	2 cut(s)	83, 143
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	398
EcoT38I	GRGCYC	2 cut(s)	85, 145
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
FaeI	CATG	3 cut(s)	136, 501, 596
FaiI	YATR	9 cut(s)	134, 275, 324, 405, 471, 499, 594, 759, 765
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	3 cut(s)	132, 497, 592
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	2 cut(s)	37, 105
Fnu4HI	GCNGC	5 cut(s)	93, 115, 376, 379, 624
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	85, 145
Fsp4HI	GCNGC	5 cut(s)	93, 115, 376, 379, 624
GlaI	GCGC	3 cut(s)	18, 52, 288
GluI	GCNGC	5 cut(s)	93, 115, 376, 379, 624
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	2 cut(s)	20, 290
HaeIII	GGCC	2 cut(s)	13, 610
HapII	CCGG	7 cut(s)	10, 14, 183, 204, 318, 433, 672
HgaI	GACGC	2 cut(s)	65, 98
HhaI	GCGC	3 cut(s)	19, 53, 289
Hin1I	GRCGYC	3 cut(s)	17, 90, 108
Hin1II	CATG	3 cut(s)	136, 501, 596
Hin6I	GCGC	3 cut(s)	17, 51, 287
HinP1I	GCGC	3 cut(s)	17, 51, 287
HincII	GTYRAC	2 cut(s)	106, 466
HindII	GTYRAC	2 cut(s)	106, 466
HinfI	GANTC	2 cut(s)	30, 172
HpaII	CCGG	7 cut(s)	10, 14, 183, 204, 318, 433, 672
HphI	GGTGA	2 cut(s)	167, 249
Hpy166II	GTNNAC	4 cut(s)	38, 106, 247, 466
Hpy188I	TCNGA	5 cut(s)	152, 171, 268, 546, 637
Hpy188III	TCNNGA	5 cut(s)	86, 138, 354, 433, 653
Hpy8I	GTNNAC	4 cut(s)	38, 106, 247, 466
Hpy99I	CGWCG	7 cut(s)	72, 81, 92, 104, 107, 110, 268
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	5 cut(s)	100, 225, 538, 600, 660
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	193, 713, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 89, 199, 384, 813
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	3 cut(s)	17, 90, 108
Hsp92II	CATG	3 cut(s)	136, 501, 596
HspAI	GCGC	3 cut(s)	17, 51, 287
KasI	GGCGCC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	432
KroI	GCCGGC	3 cut(s)	9, 13, 182
KroNI	GCCGGC	3 cut(s)	11, 15, 184
Kzo9I	GATC	4 cut(s)	46, 120, 152, 210
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	5 cut(s)	140, 191, 435, 435, 655
Lsp1109I	GCAGC	2 cut(s)	365, 387
LweI	GCATC	1 cut(s)	354
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	616, 767
MalI	GATC	4 cut(s)	48, 122, 154, 212
MboI	GATC	4 cut(s)	46, 120, 152, 210
MboII	GAAGA	3 cut(s)	47, 50, 533
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	85, 145
MluCI	AATT	2 cut(s)	509, 695
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	9 cut(s)	170, 238, 290, 328, 350, 389, 392, 585, 747
MroI	TCCGGA	1 cut(s)	432
MroNI	GCCGGC	3 cut(s)	9, 13, 182
MseI	TTAA	3 cut(s)	702, 720, 820
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	7 cut(s)	10, 14, 183, 204, 318, 433, 672
MspR9I	CCNGG	2 cut(s)	204, 318
MvnI	CGCG	4 cut(s)	51, 87, 95, 282
MwoI	GCNNNNNNNGC	5 cut(s)	23, 89, 199, 384, 813
NaeI	GCCGGC	3 cut(s)	11, 15, 184
NarI	GGCGCC	1 cut(s)	17
NciI	CCSGG	2 cut(s)	204, 318
NdeII	GATC	4 cut(s)	46, 120, 152, 210
NgoMIV	GCCGGC	3 cut(s)	9, 13, 182
NlaIII	CATG	3 cut(s)	136, 501, 596
NlaIV	GGNNCC	3 cut(s)	18, 187, 431
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	767
NruI	TCGCGA	1 cut(s)	87
NspI	RCATGY	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	576
PciI	ACATGT	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	3 cut(s)	73, 76, 96
PdiI	GCCGGC	3 cut(s)	11, 15, 184
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	94, 116, 377, 380, 625
PleI	GAGTC	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	398
PscI	ACATGT	1 cut(s)	132
PshAI	GACNNNNGTC	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	405
Psp124BI	GAGCTC	2 cut(s)	85, 145
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	18, 187, 431
PspPI	GGNCC	1 cut(s)	398
PspPPI	RGGWCCY	1 cut(s)	398
PspXI	VCTCGAGB	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	378
RruI	TCGCGA	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	2 cut(s)	85, 145
SalI	GTCGAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	702, 720, 820
SatI	GCNGC	5 cut(s)	93, 115, 376, 379, 624
Sau3AI	GATC	4 cut(s)	46, 120, 152, 210
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	204, 318
SduI	GDGCHC	2 cut(s)	85, 145
SetI	ASST	9 cut(s)	85, 111, 145, 262, 339, 380, 403, 440, 586
SfaNI	GCATC	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	576
SgrDI	CGTCGACG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	509, 695
SsiI	CCGC	6 cut(s)	93, 112, 115, 200, 624, 680
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	2 cut(s)	565, 784
SstI	GAGCTC	2 cut(s)	85, 145
StyD4I	CCNGG	2 cut(s)	202, 316
TaaI	ACNGT	5 cut(s)	100, 225, 538, 600, 660
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	79, 105, 209, 577
TasI	AATT	2 cut(s)	509, 695
TauI	GCSGC	3 cut(s)	95, 117, 626
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	3 cut(s)	702, 720, 820
Tru9I	TTAA	3 cut(s)	702, 720, 820
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	2 cut(s)	375, 378
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	3 cut(s)	50, 609, 720
TspGWI	ACGGA	2 cut(s)	23, 32
Van91I	CCANNNNNTGG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	398
XagI	CCTNNNNNAGG	1 cut(s)	294
XceI	RCATGY	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	576
XmiI	GTMKAC	2 cut(s)	37, 105
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.