Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008595

Physical Location & Seq

Genomic Coordinates Forward (+)

23468969 .. 23471222

Gene Structure 2254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTGGAATTCAGAGGGTGAAGATCGGAGTTTGGAGCCAACTTTAAAGAAGCGCAAAGCAACTTTTAGAAACAATGAAGAGGATGGGCAATTTTTCTGCCAGCCACCTGGCCAGCCCAACAAGTTTCCTGGTCGATTTACAGGGCCAGATATAATGCTACAGGTCAGCAGGAGAGAAAAGAAAGAAGGAATTGCTGCTGATCCAAATATTGACACTAAAATGAAGATGGGTTCACAGTTCAAGGGTAAGATACTAGAAGATAACATGGTTGGCATTCTAAAGCAATGGCACGGTGATGTGAGGAGGAAAAGGAAGAAGGAAGAACAAGAATCACAATCTGCACACGTCTTCTTCCATGGAATGGAGCTCCATGAGGCACAACATATGTATATGCAGATTTCTTTACTTCTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0007275 GO:0007399 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0031984 GO:0032501 GO:0032502 GO:0032925 GO:0032926 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048483 GO:0048484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0098827 GO:1900107 GO:1900108 GO:1900145 GO:1900146 GO:1900175 GO:1900176 GO:1903506 GO:2000026 GO:2000112 GO:2000380 GO:2000381 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

138

Amino Acids

16.09

Weight (kDa)

9.04

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44330
fragaria_vesca	FvH4_3g25670 FvH4_3g25670 FvH4_3g25670 FvH4_3g25670
malus_domestica	MD03G1149800.v1.1 MD11G1168600.v1.1
prunus_persica	Prupe.6G135800_v2.0.a1
pyrus_communis	pycom11g14130
rosa_chinensis	RchiOBHm_Chr5g0045881
rosa_laevigata	RLG00000034394
rosa_multiflora	Rmu_sc0001212.1_g000004
rosa_roxburghii	Rroxscaffold_1G00028740 Rroxscaffold_1G00035230 Rroxscaffold_2G00117520 Rroxscaffold_2G00117530
rosa_rugosa	Rorug05G0226200 Rorug05G0226300
rosa_samantha	Rh5AG307700 Rh5BG316000 Rh5CG342200 Rh5DG326300
rosa_wichuraiana	Rw5G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	241
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	106, 127
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw21I	GWGCWC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	2 cut(s)	109, 143
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	29, 305
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	77, 220
BciT130I	CCWGG	2 cut(s)	108, 129
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	108, 129
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	108, 129
BpiI	GAAGAC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	108, 129
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	111, 145
BsiHKAI	GWGCWC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	111, 145
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	22, 199
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	2 cut(s)	111, 145
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	22, 199
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	108, 129
Bst4CI	ACNGT	2 cut(s)	237, 293
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	101, 113
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	25, 202
BstMBI	GATC	2 cut(s)	22, 199
BstNI	CCWGG	2 cut(s)	108, 129
BstSCI	CCNGG	2 cut(s)	106, 127
BstSFI	CTRYAG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	111, 145
BtgI	CCRYGG	1 cut(s)	355
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	101, 113
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	3 cut(s)	265, 356, 371
CviJI	RGCY	6 cut(s)	37, 103, 111, 115, 145, 367
CviKI_1	RGCY	6 cut(s)	37, 103, 111, 115, 145, 367
DpnI	GATC	2 cut(s)	24, 201
DpnII	GATC	2 cut(s)	22, 199
DraI	TTTAAA	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	106, 127
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	268, 359, 374
FaiI	YATR	9 cut(s)	152, 266, 357, 372, 384, 386, 390, 392, 415
FatI	CATG	3 cut(s)	264, 355, 370
FauNDI	CATATG	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	111, 145
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	268, 359, 374
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	2 cut(s)	29, 305
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	13, 27
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	179, 310
HpyCH4III	ACNGT	2 cut(s)	237, 293
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	341, 394
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	268, 359, 374
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	22, 199
LmnI	GCTCC	3 cut(s)	34, 364, 372
Lsp1109I	GCAGC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	345
MalI	GATC	2 cut(s)	24, 201
MboI	GATC	2 cut(s)	22, 199
MboII	GAAGA	8 cut(s)	32, 89, 235, 269, 325, 332, 340, 343
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	3 cut(s)	7, 89, 189
MluNI	TGGCCA	1 cut(s)	111
MnlI	CCTC	5 cut(s)	7, 73, 294, 297, 367
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	218, 294
Msp20I	TGGCCA	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	108, 129
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	108, 129
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	22, 199
NlaIII	CATG	3 cut(s)	268, 359, 374
NlaIV	GGNNCC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	106, 127
PspGI	CCWGG	2 cut(s)	106, 127
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	143
RseI	CAYNNNNRTG	2 cut(s)	218, 294
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	22, 199
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	108, 129
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	4 cut(s)	109, 165, 348, 369
SfcI	CTRYAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	218, 294
Sse9I	AATT	3 cut(s)	7, 89, 189
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	106, 127
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	237, 293
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	133
TasI	AATT	3 cut(s)	7, 89, 189
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	90, 236
Van91I	CCANNNNNTGG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.